Wall clock time and date at job start Tue Mar 31 2020 14:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48503 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47188 * 299.99529 * 3 2 1 6 6 H 1.48492 * 109.47198 * 59.99731 * 3 2 1 7 7 C 1.38659 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99463 * 180.02562 * 7 2 1 9 9 O 1.34783 * 120.00311 * 0.02562 * 7 2 1 10 10 C 1.35765 * 117.00055 * 174.60685 * 9 7 2 11 11 C 1.38935 * 119.99505 * 6.82846 * 10 9 7 12 12 C 1.37973 * 120.00956 * 180.02562 * 11 10 9 13 13 C 1.38993 * 119.99348 * 359.97348 * 12 11 10 14 14 N 1.39718 * 120.01035 * 179.97438 * 13 12 11 15 15 C 1.38708 * 119.99800 * 149.00906 * 14 13 12 16 16 C 1.39499 * 119.75302 * 154.16578 * 15 14 13 17 17 C 1.36524 * 120.14728 * 180.25430 * 16 15 14 18 18 C 1.39833 * 119.92732 * 359.49643 * 17 16 15 19 19 C 1.40779 * 120.42949 * 0.52675 * 18 17 16 20 20 C 1.38434 * 119.01310 * 359.72735 * 19 18 17 21 21 N 1.39301 * 109.54979 * 179.72798 * 19 18 17 22 22 C 1.34428 * 111.32087 * 359.97438 * 21 19 18 23 23 O 1.21332 * 126.20146 * 180.02562 * 22 21 19 24 24 C 1.46982 * 132.97797 * 180.17089 * 18 17 16 25 25 O 1.21458 * 127.52804 * 0.33778 * 24 18 17 26 26 C 1.39004 * 119.98708 * 0.28248 * 13 12 11 27 27 C 1.37981 * 119.98566 * 359.46261 * 26 13 12 28 28 H 0.97003 * 119.99507 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99141 * 0.02562 * 11 10 9 30 30 H 1.07999 * 119.99937 * 179.97438 * 12 11 10 31 31 H 0.96998 * 120.00158 * 329.02126 * 14 13 12 32 32 H 1.08002 * 119.92445 * 359.97438 * 16 15 14 33 33 H 1.08006 * 120.03745 * 179.74260 * 17 16 15 34 34 H 1.08001 * 120.00068 * 180.02562 * 20 19 18 35 35 H 0.97000 * 124.33590 * 179.97438 * 21 19 18 36 36 H 1.07994 * 120.01068 * 179.70186 * 26 13 12 37 37 H 1.07995 * 119.99568 * 180.25604 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8909 2.3964 1.2124 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0697 -3.5041 -0.1126 11 6 3.4571 -3.4401 -0.0788 12 6 4.2042 -4.5943 -0.1943 13 6 3.5686 -5.8213 -0.3440 14 7 4.3248 -6.9903 -0.4615 15 6 3.8231 -8.1918 0.0167 16 6 4.2613 -9.3946 -0.5375 17 6 3.7690 -10.5816 -0.0765 18 6 2.8312 -10.5922 0.9607 19 6 2.3812 -9.3847 1.5275 20 6 2.8852 -8.1884 1.0465 21 7 1.4531 -9.6576 2.5298 22 6 1.2555 -10.9802 2.6660 23 8 0.5058 -11.5152 3.4559 24 6 2.1293 -11.6741 1.6659 25 8 2.2346 -12.8695 1.4787 26 6 2.1805 -5.8845 -0.3831 27 6 1.4340 -4.7304 -0.2623 28 1 -0.4849 0.8401 -0.0004 29 1 3.9509 -2.4867 0.0379 30 1 5.2827 -4.5443 -0.1684 31 1 5.2006 -6.9616 -0.8773 32 1 4.9883 -9.3866 -1.3362 33 1 4.1064 -11.5116 -0.5098 34 1 2.5513 -7.2526 1.4700 35 1 1.0067 -8.9800 3.0612 36 1 1.6864 -6.8371 -0.5042 37 1 0.3555 -4.7798 -0.2885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212611112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:50 Heat of formation + Delta-G solvation = -9.025866 kcal Electronic energy + Delta-G solvation = -25106.126200 eV Core-core repulsion = 21201.264379 eV Total energy + Delta-G solvation = -3904.861821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.96743 -39.94615 -38.87892 -38.36262 -37.56907 -36.15427 -34.21634 -32.36605 -31.11280 -30.23810 -29.83643 -28.04122 -26.24337 -25.25499 -23.27977 -22.36846 -21.95463 -20.92116 -20.70961 -18.67081 -18.09863 -17.87525 -17.42862 -16.61973 -16.54000 -16.36118 -15.92087 -15.25347 -14.78028 -14.70117 -14.33813 -14.22403 -14.09581 -13.93338 -13.70658 -13.32265 -13.25473 -12.97219 -12.77146 -12.33528 -12.29114 -11.82020 -11.74787 -11.49972 -11.27814 -11.11580 -10.89003 -10.54729 -10.29294 -9.76084 -9.53607 -9.04573 -8.67742 -8.48634 -8.27331 -6.89704 -6.59664 -4.17136 -0.11804 1.04320 1.49489 1.90973 2.14323 2.37063 2.75995 3.02606 3.04454 3.10036 3.13029 3.43992 3.50900 3.84073 4.32632 4.34635 4.41957 4.85058 4.92591 4.97636 5.00079 5.09824 5.33060 5.37905 5.46206 5.58708 5.84852 5.92548 5.94714 6.02956 6.06600 6.15912 6.22910 6.48759 6.55154 6.66462 6.78397 6.86583 7.03586 7.10573 7.28282 7.44529 7.49270 7.67506 7.83914 8.85478 9.53076 10.57730 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.002459 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.820374 B =11382.283567 C =12295.831589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.142 3.858 11 C -0.211 4.211 12 C -0.093 4.093 13 C 0.044 3.956 14 N -0.657 5.657 15 C 0.285 3.715 16 C -0.223 4.223 17 C 0.038 3.962 18 C -0.304 4.304 19 C 0.232 3.768 20 C -0.214 4.214 21 N -0.650 5.650 22 C 0.494 3.506 23 O -0.459 6.459 24 C 0.395 3.605 25 O -0.394 6.394 26 C -0.099 4.099 27 C -0.169 4.169 28 H 0.271 0.729 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.409 0.591 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.425 0.575 36 H 0.119 0.881 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.451 -13.906 -0.667 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.088 3.912 11 C -0.231 4.231 12 C -0.113 4.113 13 C -0.050 4.050 14 N -0.275 5.275 15 C 0.176 3.824 16 C -0.246 4.246 17 C 0.018 3.982 18 C -0.310 4.310 19 C 0.133 3.867 20 C -0.239 4.239 21 N -0.297 5.297 22 C 0.278 3.722 23 O -0.329 6.329 24 C 0.267 3.733 25 O -0.265 6.265 26 C -0.119 4.119 27 C -0.188 4.188 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.130 0.870 31 H 0.246 0.754 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.266 0.734 36 H 0.137 0.863 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.525 -14.625 -0.268 16.930 hybrid contribution 0.605 1.485 0.129 1.609 sum 9.130 -13.140 -0.139 16.001 Atomic orbital electron populations 1.70042 1.06015 1.27842 1.45290 1.25322 0.95866 0.98953 0.96357 0.85632 0.79110 0.80221 0.78393 1.19052 1.20036 1.20051 1.21377 0.91829 0.80719 1.52965 0.88908 1.83971 1.34388 1.11473 1.77742 1.19396 0.90206 0.88214 0.93431 1.21026 0.93686 0.98612 1.09813 1.20473 0.98645 0.91098 1.01091 1.17225 0.90552 0.85048 1.12159 1.41878 1.20194 1.04014 1.61425 1.17668 0.90352 0.86099 0.88251 1.20416 1.08372 0.90547 1.05265 1.20166 0.89729 0.98116 0.90174 1.20113 1.10142 0.93180 1.07570 1.17976 0.87621 0.94236 0.86817 1.20090 1.05960 0.96692 1.01187 1.43366 1.41582 1.08783 1.35972 1.21226 0.83124 0.83151 0.84741 1.90830 1.35355 1.70316 1.36427 1.22015 0.80682 0.88428 0.82174 1.90606 1.57870 1.16418 1.61557 1.20530 0.91690 0.97757 1.01905 1.20087 0.99745 0.89849 1.09165 0.91862 0.84999 0.86978 0.75418 0.84734 0.84671 0.83792 0.73446 0.86321 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.87 13.67 55.48 0.76 -23.11 16 2 C 0.04 1.04 5.49 -17.51 -0.10 0.94 16 3 Si 0.94 19.26 29.55 -169.99 -5.02 14.23 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.17 9.48 30.89 0.29 -9.88 16 8 H 0.09 2.20 5.21 -52.49 -0.27 1.92 16 9 O -0.17 -4.53 9.75 0.14 0.00 -4.53 16 10 C 0.14 3.04 6.65 -39.06 -0.26 2.78 16 11 C -0.21 -3.95 9.16 -39.42 -0.36 -4.32 16 12 C -0.09 -1.38 9.95 -39.40 -0.39 -1.78 16 13 C 0.04 0.60 5.91 -83.70 -0.49 0.11 16 14 N -0.66 -6.69 5.42 -8.39 -0.05 -6.74 16 15 C 0.28 2.80 6.04 -83.89 -0.51 2.29 16 16 C -0.22 -1.80 9.87 -39.73 -0.39 -2.19 16 17 C 0.04 0.32 10.05 -39.60 -0.40 -0.07 16 18 C -0.30 -3.17 6.33 -104.80 -0.66 -3.83 16 19 C 0.23 2.36 7.15 -83.43 -0.60 1.77 16 20 C -0.21 -2.24 7.83 -39.12 -0.31 -2.54 16 21 N -0.65 -6.32 5.94 -10.00 -0.06 -6.38 16 22 C 0.49 6.02 8.61 -11.56 -0.10 5.92 16 23 O -0.46 -6.89 18.03 5.51 0.10 -6.79 16 24 C 0.39 4.80 7.94 -31.18 -0.25 4.56 16 25 O -0.39 -5.63 18.04 5.40 0.10 -5.53 16 26 C -0.10 -1.47 7.71 -39.39 -0.30 -1.77 16 27 C -0.17 -3.08 9.98 -39.42 -0.39 -3.47 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.13 2.50 5.65 -52.48 -0.30 2.20 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.41 3.17 8.88 -40.82 -0.36 2.80 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.14 1.62 6.28 -52.49 -0.33 1.29 16 35 H 0.42 3.25 8.96 -40.82 -0.37 2.88 16 36 H 0.12 1.56 6.54 -52.49 -0.34 1.22 16 37 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -30.79 331.94 -7.18 -37.98 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -2.80 Total: 7.38 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -5.22 Total: -11.51 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.65 Total: -36.23 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.20 Total: -16.86 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.79 -7.18 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212611112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.950 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds