Wall clock time and date at job start Tue Mar 31 2020 14:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48503 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47188 * 299.99529 * 3 2 1 6 6 H 1.48492 * 109.47198 * 59.99731 * 3 2 1 7 7 C 1.38659 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99463 * 180.02562 * 7 2 1 9 9 O 1.34783 * 120.00311 * 0.02562 * 7 2 1 10 10 C 1.35765 * 117.00055 * 174.60685 * 9 7 2 11 11 C 1.38935 * 119.99505 * 6.82846 * 10 9 7 12 12 C 1.37973 * 120.00956 * 180.02562 * 11 10 9 13 13 C 1.38993 * 119.99348 * 359.97348 * 12 11 10 14 14 N 1.39718 * 120.01035 * 179.97438 * 13 12 11 15 15 C 1.38708 * 119.99800 * 149.00906 * 14 13 12 16 16 C 1.39499 * 119.75302 * 154.16578 * 15 14 13 17 17 C 1.36524 * 120.14728 * 180.25430 * 16 15 14 18 18 C 1.39833 * 119.92732 * 359.49643 * 17 16 15 19 19 C 1.40779 * 120.42949 * 0.52675 * 18 17 16 20 20 C 1.38434 * 119.01310 * 359.72735 * 19 18 17 21 21 N 1.39301 * 109.54979 * 179.72798 * 19 18 17 22 22 C 1.34428 * 111.32087 * 359.97438 * 21 19 18 23 23 O 1.21332 * 126.20146 * 180.02562 * 22 21 19 24 24 C 1.46982 * 132.97797 * 180.17089 * 18 17 16 25 25 O 1.21458 * 127.52804 * 0.33778 * 24 18 17 26 26 C 1.39004 * 119.98708 * 0.28248 * 13 12 11 27 27 C 1.37981 * 119.98566 * 359.46261 * 26 13 12 28 28 H 0.97003 * 119.99507 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99141 * 0.02562 * 11 10 9 30 30 H 1.07999 * 119.99937 * 179.97438 * 12 11 10 31 31 H 0.96998 * 120.00158 * 329.02126 * 14 13 12 32 32 H 1.08002 * 119.92445 * 359.97438 * 16 15 14 33 33 H 1.08006 * 120.03745 * 179.74260 * 17 16 15 34 34 H 1.08001 * 120.00068 * 180.02562 * 20 19 18 35 35 H 0.97000 * 124.33590 * 179.97438 * 21 19 18 36 36 H 1.07994 * 120.01068 * 179.70186 * 26 13 12 37 37 H 1.07995 * 119.99568 * 180.25604 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8909 2.3964 1.2124 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0697 -3.5041 -0.1126 11 6 3.4571 -3.4401 -0.0788 12 6 4.2042 -4.5943 -0.1943 13 6 3.5686 -5.8213 -0.3440 14 7 4.3248 -6.9903 -0.4615 15 6 3.8231 -8.1918 0.0167 16 6 4.2613 -9.3946 -0.5375 17 6 3.7690 -10.5816 -0.0765 18 6 2.8312 -10.5922 0.9607 19 6 2.3812 -9.3847 1.5275 20 6 2.8852 -8.1884 1.0465 21 7 1.4531 -9.6576 2.5298 22 6 1.2555 -10.9802 2.6660 23 8 0.5058 -11.5152 3.4559 24 6 2.1293 -11.6741 1.6659 25 8 2.2346 -12.8695 1.4787 26 6 2.1805 -5.8845 -0.3831 27 6 1.4340 -4.7304 -0.2623 28 1 -0.4849 0.8401 -0.0004 29 1 3.9509 -2.4867 0.0379 30 1 5.2827 -4.5443 -0.1684 31 1 5.2006 -6.9616 -0.8773 32 1 4.9883 -9.3866 -1.3362 33 1 4.1064 -11.5116 -0.5098 34 1 2.5513 -7.2526 1.4700 35 1 1.0067 -8.9800 3.0612 36 1 1.6864 -6.8371 -0.5042 37 1 0.3555 -4.7798 -0.2885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212611112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:49 Heat of formation + Delta-G solvation = -30.123942 kcal Electronic energy + Delta-G solvation = -25107.041082 eV Core-core repulsion = 21201.264379 eV Total energy + Delta-G solvation = -3905.776703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.88251 -41.14009 -40.13182 -39.38625 -38.80493 -37.30086 -35.29045 -34.13720 -32.22221 -31.38928 -30.77561 -29.24641 -27.56475 -26.71265 -24.25681 -23.58668 -23.05905 -22.08819 -21.66809 -19.94877 -19.35475 -19.04618 -18.59222 -17.95015 -17.48336 -17.33948 -16.92921 -16.38737 -16.22172 -15.93628 -15.55210 -15.43996 -15.33798 -14.98726 -14.94888 -14.50170 -14.33065 -14.09762 -14.02184 -13.60388 -13.32998 -13.32379 -13.10667 -12.82103 -12.41195 -12.38801 -12.13012 -12.07598 -11.35745 -11.14679 -10.74633 -10.73304 -9.85044 -9.64076 -9.30273 -8.44634 -8.13300 -6.09842 -1.05902 0.20818 0.52896 0.55711 0.92472 1.38147 1.45345 1.48881 1.55410 1.79720 2.18338 2.21356 2.52892 2.67830 2.87014 3.17628 3.46228 3.56638 3.61969 4.04668 4.07533 4.12464 4.17134 4.28556 4.50223 4.54572 4.70238 4.77555 4.90322 5.06904 5.11822 5.20152 5.25463 5.27047 5.32864 5.44022 5.45594 5.67093 5.72835 5.91042 5.98563 6.05099 6.39935 6.54803 6.74043 7.01156 7.83072 8.78916 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.002459 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.820374 B =11382.283567 C =12295.831589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.016 2.984 4 H -0.248 1.248 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.407 4.407 8 H 0.105 0.895 9 O -0.233 6.233 10 C 0.098 3.902 11 C -0.214 4.214 12 C -0.091 4.091 13 C 0.087 3.913 14 N -0.648 5.648 15 C 0.278 3.722 16 C -0.200 4.200 17 C 0.043 3.957 18 C -0.306 4.306 19 C 0.229 3.771 20 C -0.218 4.218 21 N -0.638 5.638 22 C 0.495 3.505 23 O -0.495 6.495 24 C 0.396 3.604 25 O -0.419 6.419 26 C -0.094 4.094 27 C -0.175 4.175 28 H 0.271 0.729 29 H 0.124 0.876 30 H 0.151 0.849 31 H 0.428 0.572 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.135 0.865 35 H 0.434 0.566 36 H 0.142 0.858 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.128 -15.889 -1.829 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.836 3.164 4 H -0.171 1.171 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.122 0.878 9 O -0.140 6.140 10 C 0.048 3.952 11 C -0.234 4.234 12 C -0.111 4.111 13 C -0.008 4.008 14 N -0.270 5.270 15 C 0.171 3.829 16 C -0.222 4.222 17 C 0.023 3.977 18 C -0.312 4.312 19 C 0.130 3.870 20 C -0.243 4.243 21 N -0.285 5.285 22 C 0.278 3.722 23 O -0.368 6.368 24 C 0.271 3.729 25 O -0.292 6.292 26 C -0.114 4.114 27 C -0.195 4.195 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.169 0.831 31 H 0.268 0.732 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.153 0.847 35 H 0.277 0.723 36 H 0.160 0.840 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.278 -16.673 -1.441 20.756 hybrid contribution -0.345 1.571 0.461 1.673 sum 11.933 -15.102 -0.980 19.272 Atomic orbital electron populations 1.70191 1.08047 1.28602 1.49212 1.26542 0.96773 1.02732 0.96151 0.84559 0.78467 0.75113 0.78311 1.17118 1.19693 1.19751 1.21842 0.92535 0.81373 1.52590 0.87757 1.83937 1.35986 1.12581 1.81515 1.19919 0.91638 0.87941 0.95709 1.21119 0.92791 0.99902 1.09594 1.20769 1.00397 0.90008 0.99939 1.17268 0.90297 0.86170 1.07107 1.41724 1.20662 1.02728 1.61885 1.17802 0.90312 0.86517 0.88235 1.20718 1.07595 0.89079 1.04843 1.20505 0.88544 0.99546 0.89063 1.20167 1.10679 0.92101 1.08226 1.17968 0.87784 0.94266 0.86937 1.20091 1.06250 0.96275 1.01654 1.43260 1.41224 1.08237 1.35784 1.21322 0.82675 0.83820 0.84338 1.90813 1.36965 1.71060 1.37937 1.22185 0.80411 0.88384 0.81969 1.90597 1.58785 1.17464 1.62364 1.20715 0.92373 0.97351 1.01004 1.20249 0.99938 0.90120 1.09171 0.92000 0.85821 0.83095 0.73193 0.81302 0.82248 0.84684 0.72334 0.83993 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.79 13.67 21.62 0.30 -54.49 16 2 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 3 Si 1.02 40.78 29.55 68.60 2.03 42.81 16 4 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.41 -22.21 9.48 67.92 0.64 -21.56 16 8 H 0.11 5.12 5.21 -2.91 -0.02 5.11 16 9 O -0.23 -13.09 9.75 -22.43 -0.22 -13.31 16 10 C 0.10 4.35 6.65 22.60 0.15 4.50 16 11 C -0.21 -7.91 9.16 22.37 0.20 -7.70 16 12 C -0.09 -2.40 9.95 22.39 0.22 -2.17 16 13 C 0.09 2.03 5.91 38.25 0.23 2.25 16 14 N -0.65 -9.52 5.42 -180.46 -0.98 -10.50 16 15 C 0.28 3.99 6.04 38.61 0.23 4.22 16 16 C -0.20 -1.99 9.87 22.17 0.22 -1.77 16 17 C 0.04 0.52 10.05 22.26 0.22 0.74 16 18 C -0.31 -5.38 6.33 -19.98 -0.13 -5.51 16 19 C 0.23 4.00 7.15 38.62 0.28 4.28 16 20 C -0.22 -3.75 7.83 22.57 0.18 -3.57 16 21 N -0.64 -11.46 5.94 -304.11 -1.81 -13.26 16 22 C 0.49 11.67 8.61 87.44 0.75 12.42 16 23 O -0.49 -14.94 18.03 -3.19 -0.06 -14.99 16 24 C 0.40 9.03 7.94 27.71 0.22 9.25 16 25 O -0.42 -11.53 18.04 -3.58 -0.06 -11.60 16 26 C -0.09 -2.57 7.71 22.39 0.17 -2.40 16 27 C -0.17 -6.46 9.98 22.38 0.22 -6.23 16 28 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.12 4.71 5.65 -2.91 -0.02 4.69 16 30 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.43 3.75 8.88 -92.71 -0.82 2.93 16 32 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 33 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.14 2.63 6.28 -2.91 -0.02 2.62 16 35 H 0.43 6.15 8.96 -92.71 -0.83 5.32 16 36 H 0.14 3.25 6.54 -2.91 -0.02 3.23 16 37 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -73.71 331.94 3.02 -70.70 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.47 Total: 18.77 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.29 Total: -14.12 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.49 Total: -78.26 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.34 Total: -39.90 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -73.71 3.02 -70.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212611112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.571 kcal (2) G-P(sol) polarization free energy of solvation -73.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds