Wall clock time and date at job start Tue Mar 31 2020 13:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 120.00262 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99523 * 3 2 1 5 5 H 1.48503 * 109.46934 * 29.99537 * 3 2 1 6 6 H 1.48502 * 109.47309 * 149.99336 * 3 2 1 7 7 C 1.38642 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00084 * 359.97438 * 7 2 1 9 9 O 1.34813 * 120.00035 * 180.02562 * 7 2 1 10 10 C 1.35668 * 117.00249 * 185.07014 * 9 7 2 11 11 C 1.38702 * 120.12023 * 354.40388 * 10 9 7 12 12 C 1.38343 * 120.02632 * 180.02562 * 11 10 9 13 13 F 1.35101 * 119.85784 * 179.97438 * 12 11 10 14 14 C 1.38666 * 120.27386 * 359.71737 * 12 11 10 15 15 C 1.37978 * 120.24817 * 0.56087 * 14 12 11 16 16 C 1.39308 * 119.96602 * 359.44435 * 15 14 12 17 17 C 1.48257 * 120.13965 * 180.25426 * 16 15 14 18 18 C 1.39405 * 120.11076 * 64.72263 * 17 16 15 19 19 C 1.37950 * 119.91877 * 179.74873 * 18 17 16 20 20 C 1.38589 * 120.15089 * 0.53085 * 19 18 17 21 21 F 1.35102 * 119.88202 * 179.72100 * 20 19 18 22 22 C 1.38494 * 120.23509 * 359.74110 * 20 19 18 23 23 C 1.50690 * 119.96644 * 179.97438 * 22 20 19 24 24 O 1.42899 * 109.47580 * 269.97948 * 23 22 20 25 25 C 1.38213 * 120.07247 * 359.97438 * 22 20 19 26 26 F 1.35100 * 120.07789 * 179.97438 * 25 22 20 27 27 H 0.97007 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.98694 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.88194 * 180.30515 * 14 12 11 30 30 H 1.08002 * 120.02205 * 179.71935 * 15 14 12 31 31 H 1.08001 * 120.04031 * 0.02562 * 18 17 16 32 32 H 1.07997 * 119.92432 * 180.27443 * 19 18 17 33 33 H 1.09000 * 109.47176 * 29.97794 * 23 22 20 34 34 H 1.09000 * 109.47333 * 149.97742 * 23 22 20 35 35 H 0.96697 * 114.00480 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7002 7 6 2.0087 -1.2007 0.0005 8 1 1.4687 -2.1360 0.0014 9 8 3.3569 -1.2007 0.0011 10 6 3.9728 -2.4048 -0.1053 11 6 3.2250 -3.5729 -0.0915 12 6 3.8551 -4.7997 -0.1995 13 9 3.1234 -5.9353 -0.1851 14 6 5.2341 -4.8684 -0.3277 15 6 5.9897 -3.7139 -0.3370 16 6 5.3657 -2.4730 -0.2288 17 6 6.1733 -1.2298 -0.2441 18 6 6.8902 -0.8755 -1.3859 19 6 7.6362 0.2848 -1.3975 20 6 7.6834 1.0933 -0.2729 21 9 8.4202 2.2256 -0.2883 22 6 6.9781 0.7445 0.8669 23 6 7.0342 1.6277 2.0865 24 8 8.1188 1.2182 2.9219 25 6 6.2230 -0.4129 0.8869 26 9 5.5354 -0.7536 1.9988 27 1 -0.4850 0.8401 -0.0004 28 1 2.1503 -3.5246 0.0045 29 1 5.7191 -5.8293 -0.4166 30 1 7.0639 -3.7718 -0.4325 31 1 6.8580 -1.5063 -2.2619 32 1 8.1881 0.5617 -2.2836 33 1 7.1833 2.6628 1.7790 34 1 6.0983 1.5441 2.6390 35 1 8.2153 1.7444 3.7274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222696484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:52 Heat of formation + Delta-G solvation = -158.309997 kcal Electronic energy + Delta-G solvation = -27342.088795 eV Core-core repulsion = 22856.604037 eV Total energy + Delta-G solvation = -4485.484759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.96611 -48.61318 -48.43269 -39.66818 -38.56046 -36.87961 -36.41501 -32.62544 -32.26750 -31.17820 -29.70204 -28.10500 -26.16734 -25.48756 -23.22525 -22.29806 -21.63507 -20.81126 -18.27504 -18.02956 -17.83925 -17.60863 -17.29220 -16.30292 -15.78505 -15.59716 -15.50354 -15.38447 -15.13998 -14.94863 -14.53045 -14.21406 -14.18232 -14.12656 -13.88898 -13.68867 -13.35882 -13.05819 -12.50843 -12.48378 -12.42453 -12.11858 -11.75816 -11.41215 -11.28311 -11.03013 -10.87106 -10.83401 -10.41890 -10.17112 -9.71442 -9.06111 -8.92487 -8.63965 -8.16805 -7.59116 -6.60403 -4.27369 0.93781 1.09933 1.68333 1.93583 3.09391 3.13885 3.26824 3.38813 3.96683 4.06061 4.07860 4.24145 4.47483 4.50589 4.65945 4.75399 4.83078 4.88101 4.93368 5.19434 5.30618 5.32949 5.41905 5.56799 5.82360 5.88231 5.93217 6.01948 6.08847 6.16751 6.29731 6.50917 6.68025 6.70867 6.84255 6.91901 7.34260 7.49178 7.56645 7.80704 8.72967 9.29476 10.46047 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.006283 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.645733 B = 4455.573353 C = 6181.208274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.071 3.929 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.393 4.393 8 H 0.110 0.890 9 O -0.193 6.193 10 C 0.201 3.799 11 C -0.258 4.258 12 C 0.150 3.850 13 F -0.147 7.147 14 C -0.242 4.242 15 C -0.026 4.026 16 C -0.152 4.152 17 C -0.056 4.056 18 C -0.048 4.048 19 C -0.170 4.170 20 C 0.136 3.864 21 F -0.133 7.133 22 C -0.171 4.171 23 C 0.121 3.879 24 O -0.564 6.564 25 C 0.172 3.828 26 F -0.115 7.115 27 H 0.283 0.717 28 H 0.149 0.851 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.372 0.776 -0.120 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.468 4.468 8 H 0.128 0.872 9 O -0.095 6.095 10 C 0.146 3.854 11 C -0.278 4.278 12 C 0.131 3.869 13 F -0.125 7.125 14 C -0.262 4.262 15 C -0.044 4.044 16 C -0.153 4.153 17 C -0.057 4.057 18 C -0.066 4.066 19 C -0.188 4.188 20 C 0.116 3.884 21 F -0.112 7.112 22 C -0.173 4.173 23 C 0.043 3.957 24 O -0.370 6.370 25 C 0.152 3.848 26 F -0.093 7.093 27 H 0.093 0.907 28 H 0.166 0.834 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 14.251 0.727 -0.516 14.278 hybrid contribution -0.297 1.040 0.635 1.254 sum 13.954 1.767 0.119 14.066 Atomic orbital electron populations 1.69635 1.05587 1.28880 1.46132 1.24445 0.94989 0.98821 0.95142 0.86295 0.80636 0.81545 0.79367 1.19504 1.20387 1.18036 1.20815 0.76469 0.96906 1.52600 0.87239 1.83577 1.22966 1.25053 1.77927 1.18658 0.90138 0.85218 0.91382 1.21103 1.02330 0.90405 1.13992 1.17546 0.89080 0.81266 0.99001 1.91443 1.77838 1.49510 1.93751 1.20513 0.91732 0.99130 1.14798 1.20502 0.98798 0.89721 0.95408 1.17550 0.89706 0.91822 1.16242 1.18631 0.99021 0.95467 0.92563 1.21027 0.93476 0.95175 0.96935 1.21023 1.03817 0.96020 0.97980 1.17154 0.92899 0.84147 0.94199 1.91480 1.74513 1.48240 1.96944 1.19422 1.03329 0.98219 0.96322 1.20702 0.90591 0.95581 0.88808 1.86544 1.51890 1.61493 1.37044 1.17257 0.91684 0.92489 0.83407 1.91544 1.76601 1.91494 1.49652 0.90686 0.83399 0.85704 0.85396 0.83654 0.83958 0.91998 0.91650 0.77235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.11 13.96 55.48 0.77 -23.34 16 2 C 0.07 1.93 5.49 -17.52 -0.10 1.83 16 3 Si 0.90 20.89 28.62 -169.99 -4.86 16.03 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -10.57 9.94 30.88 0.31 -10.26 16 8 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 9 O -0.19 -4.79 7.79 0.35 0.00 -4.79 16 10 C 0.20 4.41 6.45 -38.75 -0.25 4.16 16 11 C -0.26 -5.46 9.14 -39.37 -0.36 -5.82 16 12 C 0.15 2.80 7.29 -39.38 -0.29 2.51 16 13 F -0.15 -2.68 17.26 2.25 0.04 -2.64 16 14 C -0.24 -3.88 10.01 -39.52 -0.40 -4.28 16 15 C -0.03 -0.41 9.72 -39.28 -0.38 -0.79 16 16 C -0.15 -2.82 5.02 -104.72 -0.53 -3.35 16 17 C -0.06 -0.98 4.95 -104.83 -0.52 -1.49 16 18 C -0.05 -0.68 9.73 -39.25 -0.38 -1.06 16 19 C -0.17 -2.23 10.01 -39.56 -0.40 -2.63 16 20 C 0.14 2.05 7.24 -39.36 -0.28 1.76 16 21 F -0.13 -1.92 16.46 2.25 0.04 -1.88 16 22 C -0.17 -2.87 5.52 -104.54 -0.58 -3.44 16 23 C 0.12 1.75 6.81 36.00 0.25 1.99 16 24 O -0.56 -7.57 13.64 -35.23 -0.48 -8.06 16 25 C 0.17 3.20 6.90 -39.08 -0.27 2.93 16 26 F -0.11 -2.36 15.88 2.25 0.04 -2.32 16 27 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.15 3.30 5.64 -52.49 -0.30 3.01 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.06 0.78 7.63 -51.93 -0.40 0.39 16 34 H 0.07 0.96 7.64 -51.93 -0.40 0.56 16 35 H 0.38 3.02 9.12 45.56 0.42 3.43 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -30.06 325.15 -5.51 -35.57 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -1.78 Total: 4.45 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -4.17 Total: -17.93 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.77 Total: -23.34 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.48 Total: -12.84 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.86 Total: 16.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.06 -5.51 -35.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222696484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.742 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds