Wall clock time and date at job start Tue Mar 31 2020 13:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 120.00262 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99523 * 3 2 1 5 5 H 1.48503 * 109.46934 * 29.99537 * 3 2 1 6 6 H 1.48502 * 109.47309 * 149.99336 * 3 2 1 7 7 C 1.38642 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00084 * 359.97438 * 7 2 1 9 9 O 1.34813 * 120.00035 * 180.02562 * 7 2 1 10 10 C 1.35668 * 117.00249 * 185.07014 * 9 7 2 11 11 C 1.38702 * 120.12023 * 354.40388 * 10 9 7 12 12 C 1.38343 * 120.02632 * 180.02562 * 11 10 9 13 13 F 1.35101 * 119.85784 * 179.97438 * 12 11 10 14 14 C 1.38666 * 120.27386 * 359.71737 * 12 11 10 15 15 C 1.37978 * 120.24817 * 0.56087 * 14 12 11 16 16 C 1.39308 * 119.96602 * 359.44435 * 15 14 12 17 17 C 1.48257 * 120.13965 * 180.25426 * 16 15 14 18 18 C 1.39405 * 120.11076 * 64.72263 * 17 16 15 19 19 C 1.37950 * 119.91877 * 179.74873 * 18 17 16 20 20 C 1.38589 * 120.15089 * 0.53085 * 19 18 17 21 21 F 1.35102 * 119.88202 * 179.72100 * 20 19 18 22 22 C 1.38494 * 120.23509 * 359.74110 * 20 19 18 23 23 C 1.50690 * 119.96644 * 179.97438 * 22 20 19 24 24 O 1.42899 * 109.47580 * 269.97948 * 23 22 20 25 25 C 1.38213 * 120.07247 * 359.97438 * 22 20 19 26 26 F 1.35100 * 120.07789 * 179.97438 * 25 22 20 27 27 H 0.97007 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.98694 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.88194 * 180.30515 * 14 12 11 30 30 H 1.08002 * 120.02205 * 179.71935 * 15 14 12 31 31 H 1.08001 * 120.04031 * 0.02562 * 18 17 16 32 32 H 1.07997 * 119.92432 * 180.27443 * 19 18 17 33 33 H 1.09000 * 109.47176 * 29.97794 * 23 22 20 34 34 H 1.09000 * 109.47333 * 149.97742 * 23 22 20 35 35 H 0.96697 * 114.00480 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7002 7 6 2.0087 -1.2007 0.0005 8 1 1.4687 -2.1360 0.0014 9 8 3.3569 -1.2007 0.0011 10 6 3.9728 -2.4048 -0.1053 11 6 3.2250 -3.5729 -0.0915 12 6 3.8551 -4.7997 -0.1995 13 9 3.1234 -5.9353 -0.1851 14 6 5.2341 -4.8684 -0.3277 15 6 5.9897 -3.7139 -0.3370 16 6 5.3657 -2.4730 -0.2288 17 6 6.1733 -1.2298 -0.2441 18 6 6.8902 -0.8755 -1.3859 19 6 7.6362 0.2848 -1.3975 20 6 7.6834 1.0933 -0.2729 21 9 8.4202 2.2256 -0.2883 22 6 6.9781 0.7445 0.8669 23 6 7.0342 1.6277 2.0865 24 8 8.1188 1.2182 2.9219 25 6 6.2230 -0.4129 0.8869 26 9 5.5354 -0.7536 1.9988 27 1 -0.4850 0.8401 -0.0004 28 1 2.1503 -3.5246 0.0045 29 1 5.7191 -5.8293 -0.4166 30 1 7.0639 -3.7718 -0.4325 31 1 6.8580 -1.5063 -2.2619 32 1 8.1881 0.5617 -2.2836 33 1 7.1833 2.6628 1.7790 34 1 6.0983 1.5441 2.6390 35 1 8.2153 1.7444 3.7274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222696484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:51 Heat of formation + Delta-G solvation = -177.243714 kcal Electronic energy + Delta-G solvation = -27342.909823 eV Core-core repulsion = 22856.604037 eV Total energy + Delta-G solvation = -4486.305786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.08398 -50.02352 -49.92511 -41.19043 -39.85343 -38.27697 -37.64084 -34.56015 -33.57100 -32.36514 -31.22889 -29.50635 -27.46276 -27.17609 -24.57049 -23.67533 -23.03452 -22.16650 -20.08858 -19.53798 -19.17807 -18.65600 -18.52509 -17.63476 -17.31726 -17.08324 -16.77607 -16.74225 -16.61440 -16.29894 -15.92680 -15.77332 -15.66513 -15.34086 -15.22449 -15.11219 -15.00826 -14.32001 -14.24352 -13.92879 -13.59846 -13.53083 -13.09761 -12.90285 -12.73220 -12.46459 -12.38946 -12.21529 -12.08396 -11.62266 -11.20312 -10.99526 -10.13567 -9.94265 -9.61303 -9.12009 -8.58991 -6.31684 -0.29514 -0.08690 0.24303 0.44416 1.23761 1.27080 1.43190 2.18973 2.22376 2.53024 2.80526 2.84741 2.93991 3.18074 3.27866 3.33598 3.48073 3.68858 3.78208 3.92899 4.06933 4.15623 4.26432 4.29979 4.35682 4.62098 4.72869 4.79563 4.89214 4.95999 5.09263 5.13966 5.19595 5.22162 5.33925 5.58491 5.71776 5.77013 6.02457 6.72642 6.74511 7.42782 8.52237 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.006283 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.645733 B = 4455.573353 C = 6181.208274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.401 4.401 8 H 0.082 0.918 9 O -0.217 6.217 10 C 0.172 3.828 11 C -0.280 4.280 12 C 0.138 3.862 13 F -0.146 7.146 14 C -0.209 4.209 15 C -0.014 4.014 16 C -0.141 4.141 17 C -0.079 4.079 18 C -0.038 4.038 19 C -0.151 4.151 20 C 0.132 3.868 21 F -0.129 7.129 22 C -0.188 4.188 23 C 0.120 3.880 24 O -0.576 6.576 25 C 0.137 3.863 26 F -0.139 7.139 27 H 0.287 0.713 28 H 0.119 0.881 29 H 0.168 0.832 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.608 0.514 -1.626 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.100 0.900 9 O -0.122 6.122 10 C 0.120 3.880 11 C -0.300 4.300 12 C 0.119 3.881 13 F -0.125 7.125 14 C -0.228 4.228 15 C -0.031 4.031 16 C -0.143 4.143 17 C -0.080 4.080 18 C -0.055 4.055 19 C -0.169 4.169 20 C 0.112 3.888 21 F -0.107 7.107 22 C -0.190 4.190 23 C 0.043 3.957 24 O -0.386 6.386 25 C 0.118 3.882 26 F -0.117 7.117 27 H 0.096 0.904 28 H 0.137 0.863 29 H 0.186 0.814 30 H 0.195 0.805 31 H 0.197 0.803 32 H 0.202 0.798 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 18.524 0.434 -2.010 18.637 hybrid contribution -1.330 0.856 1.088 1.920 sum 17.193 1.290 -0.922 17.266 Atomic orbital electron populations 1.69717 1.06841 1.29748 1.49057 1.25155 0.95718 1.01760 0.95198 0.85442 0.79149 0.78055 0.79713 1.18495 1.19103 1.18600 1.20691 0.77890 0.96161 1.52955 0.90018 1.83549 1.21254 1.26369 1.81057 1.19204 0.91786 0.84576 0.92388 1.21074 1.01317 0.92045 1.15603 1.17711 0.90377 0.80309 0.99693 1.91444 1.78171 1.49072 1.93785 1.21055 0.90083 1.01313 1.10332 1.21087 1.01076 0.87972 0.93003 1.17955 0.88239 0.94023 1.14040 1.18806 1.00205 0.95329 0.93682 1.21397 0.91937 0.95724 0.96476 1.21470 1.02482 0.94582 0.98391 1.17352 0.92602 0.84513 0.94320 1.91495 1.74259 1.48026 1.96915 1.19719 1.03368 0.98003 0.97879 1.20682 0.90449 0.96111 0.88466 1.86481 1.51309 1.62519 1.38276 1.17624 0.93095 0.94016 0.83503 1.91475 1.77461 1.91856 1.50941 0.90362 0.86319 0.81402 0.80464 0.80280 0.79846 0.90198 0.92823 0.74685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.82 13.96 21.61 0.30 -53.52 16 2 C 0.02 1.23 5.49 84.83 0.47 1.70 16 3 Si 0.95 44.54 28.62 68.60 1.96 46.51 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.40 -23.10 9.94 67.92 0.68 -22.43 16 8 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 9 O -0.22 -11.29 7.79 -21.66 -0.17 -11.46 16 10 C 0.17 7.72 6.45 22.81 0.15 7.87 16 11 C -0.28 -12.36 9.14 22.41 0.20 -12.16 16 12 C 0.14 5.01 7.29 22.40 0.16 5.18 16 13 F -0.15 -5.22 17.26 44.97 0.78 -4.44 16 14 C -0.21 -5.80 10.01 22.31 0.22 -5.58 16 15 C -0.01 -0.37 9.72 22.47 0.22 -0.15 16 16 C -0.14 -5.00 5.02 -19.93 -0.10 -5.10 16 17 C -0.08 -2.60 4.95 -20.00 -0.10 -2.70 16 18 C -0.04 -0.90 9.73 22.48 0.22 -0.68 16 19 C -0.15 -3.25 10.01 22.29 0.22 -3.03 16 20 C 0.13 3.56 7.24 22.41 0.16 3.72 16 21 F -0.13 -3.27 16.46 44.97 0.74 -2.53 16 22 C -0.19 -6.03 5.52 -19.81 -0.11 -6.14 16 23 C 0.12 3.38 6.81 71.23 0.49 3.87 16 24 O -0.58 -14.73 13.64 -148.98 -2.03 -16.76 16 25 C 0.14 5.03 6.90 22.59 0.16 5.19 16 26 F -0.14 -5.87 15.88 44.97 0.71 -5.16 16 27 H 0.29 15.47 8.31 -92.70 -0.77 14.70 16 28 H 0.12 5.86 5.64 -2.91 -0.02 5.85 16 29 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.08 1.89 7.63 -2.39 -0.02 1.87 16 34 H 0.05 1.60 7.64 -2.39 -0.02 1.58 16 35 H 0.40 5.80 9.12 -74.06 -0.68 5.13 16 Total: -1.00 -71.13 325.15 5.84 -65.29 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.51 Total: 12.50 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 3.03 Total: -30.43 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.30 Total: -53.52 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -2.20 Total: -28.22 kcal Atomic # 9 Polarization: -14.36 SS G_CDS: 2.23 Total: -12.13 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.96 Total: 46.51 kcal Total: -71.13 5.84 -65.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222696484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.952 kcal (2) G-P(sol) polarization free energy of solvation -71.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds