Wall clock time and date at job start Tue Mar 31 2020 13:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 109.47104 * 2 1 4 4 C 1.46892 * 109.47216 * 239.99534 * 2 1 3 5 5 C 1.46900 * 109.47104 * 119.99681 * 2 1 3 6 6 C 1.53001 * 109.47379 * 66.95834 * 5 2 1 7 7 H 1.08993 * 109.47008 * 182.43437 * 6 5 2 8 8 C 1.50699 * 109.46774 * 302.43533 * 6 5 2 9 9 H 1.08003 * 119.99982 * 112.74678 * 8 6 5 10 10 C 1.37878 * 119.99938 * 292.46419 * 8 6 5 11 11 N 1.31521 * 120.00187 * 180.27669 * 10 8 6 12 12 Si 1.86798 * 119.99982 * 0.28429 * 10 8 6 13 13 H 1.48494 * 109.47257 * 89.99545 * 12 10 8 14 14 H 1.48501 * 109.47055 * 209.99662 * 12 10 8 15 15 H 1.48496 * 109.47084 * 329.99101 * 12 10 8 16 16 O 1.42903 * 109.46923 * 62.43071 * 6 5 2 17 17 C 1.42894 * 113.99596 * 96.56971 * 16 6 5 18 18 F 1.39899 * 115.55367 * 272.25962 * 17 16 6 19 19 C 1.53005 * 117.50165 * 57.93173 * 17 16 6 20 20 C 1.52997 * 60.00008 * 107.48538 * 19 17 16 21 21 H 1.09002 * 117.49996 * 107.49098 * 20 19 17 22 22 C 1.53004 * 117.50363 * 252.51072 * 20 19 17 23 23 Br 1.96594 * 109.47417 * 136.65023 * 22 20 19 24 24 H 1.09000 * 109.46782 * 271.51654 * 1 2 3 25 25 H 1.09002 * 109.46838 * 31.51175 * 1 2 3 26 26 H 1.09001 * 109.47411 * 151.51561 * 1 2 3 27 27 H 1.09005 * 109.47127 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46808 * 299.99427 * 3 2 1 29 29 H 1.08996 * 109.47481 * 59.99414 * 3 2 1 30 30 H 1.08998 * 109.47454 * 330.04206 * 4 2 1 31 31 H 1.09009 * 109.47055 * 90.04028 * 4 2 1 32 32 H 1.08998 * 109.47601 * 210.04481 * 4 2 1 33 33 H 1.09003 * 109.47017 * 306.95717 * 5 2 1 34 34 H 1.09002 * 109.47091 * 186.96325 * 5 2 1 35 35 H 0.96992 * 119.99699 * 180.02562 * 11 10 8 36 36 H 1.08990 * 117.50178 * 214.97997 * 19 17 16 37 37 H 1.08999 * 117.49606 * 359.97438 * 19 17 16 38 38 H 1.09002 * 109.46944 * 256.65626 * 22 20 19 39 39 H 1.09007 * 109.46709 * 16.64991 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1993 5 6 1.9587 -0.6924 1.1995 6 6 1.5964 -2.1766 1.1153 7 1 1.9215 -2.6820 2.0246 8 6 0.1038 -2.3215 0.9661 9 1 -0.3122 -2.7049 0.0461 10 6 -0.7303 -1.9703 2.0062 11 7 -2.0326 -2.1019 1.8780 12 14 -0.0108 -1.3072 3.5974 13 1 0.0979 0.1713 3.5133 14 1 -0.8958 -1.6747 4.7318 15 1 1.3375 -1.8913 3.8122 16 8 2.2471 -2.7624 -0.0141 17 6 3.4737 -3.4245 0.3008 18 9 4.6161 -2.6171 0.2872 19 6 3.4216 -4.5574 1.3278 20 6 3.6292 -4.8771 -0.1539 21 1 4.6218 -5.2038 -0.4640 22 6 2.4597 -5.5095 -0.9110 23 35 2.2754 -4.6495 -2.6692 24 1 -0.3633 0.0272 1.0273 25 1 -0.3633 0.8761 -0.5371 26 1 -0.3634 -0.9033 -0.4901 27 1 3.0487 1.3850 -0.0005 28 1 1.5954 1.8988 -0.8901 29 1 1.5953 1.8989 0.8899 30 1 1.2404 -1.4567 -1.4964 31 1 2.0805 0.0263 -2.0097 32 1 2.9185 -1.1612 -0.9819 33 1 1.4973 -0.2554 2.0851 34 1 3.0416 -0.5858 1.2640 35 1 -2.6194 -1.8544 2.6096 36 1 4.2774 -4.6738 1.9926 37 1 2.4517 -4.7974 1.7636 38 1 2.6474 -6.5748 -1.0453 39 1 1.5408 -5.3715 -0.3409 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224457585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:49 Heat of formation + Delta-G solvation = 55.162820 kcal Electronic energy + Delta-G solvation = -22486.614592 eV Core-core repulsion = 19124.509707 eV Total energy + Delta-G solvation = -3362.104885 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.85847 -43.32135 -39.67931 -36.81328 -34.82313 -32.11035 -31.83988 -30.20234 -29.84925 -28.00224 -27.82870 -24.52453 -24.03066 -22.29451 -22.01401 -19.64706 -18.73514 -18.34977 -18.16294 -17.50954 -17.29015 -16.74466 -16.17495 -15.44122 -15.41419 -15.04070 -14.77135 -14.57366 -14.35221 -14.27733 -14.18548 -14.00616 -13.92402 -13.84731 -13.54286 -13.23310 -13.02152 -12.94397 -12.83563 -12.15660 -11.86142 -11.54878 -11.28115 -11.00114 -10.90844 -10.69939 -10.58032 -10.39471 -7.99052 -6.08720 0.51181 0.72807 1.47260 1.65175 1.82679 1.86096 2.32359 2.44969 2.46934 2.54088 2.56853 2.94600 3.17301 3.26939 3.31177 3.36381 3.53118 3.61599 3.69032 3.74374 3.80532 3.85600 3.90681 4.06046 4.18074 4.24719 4.37616 4.44686 4.48142 4.54877 4.64432 4.72753 4.84231 4.99533 5.46829 5.78690 6.55953 7.05994 7.48738 9.08629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.248 5.248 3 C -0.044 4.044 4 C -0.032 4.032 5 C -0.036 4.036 6 C 0.163 3.837 7 H 0.071 0.929 8 C -0.565 4.565 9 H 0.104 0.896 10 C 0.088 3.912 11 N -0.840 5.840 12 Si 0.843 3.157 13 H -0.269 1.269 14 H -0.266 1.266 15 H -0.258 1.258 16 O -0.315 6.315 17 C 0.184 3.816 18 F -0.178 7.178 19 C -0.185 4.185 20 C -0.127 4.127 21 H 0.131 0.869 22 C -0.046 4.046 23 Br -0.148 7.148 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.151 0.849 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.286 0.714 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 6.561 -3.447 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 N 0.094 4.906 3 C -0.186 4.186 4 C -0.173 4.173 5 C -0.158 4.158 6 C 0.105 3.895 7 H 0.089 0.911 8 C -0.601 4.601 9 H 0.121 0.879 10 C -0.123 4.123 11 N -0.471 5.471 12 Si 0.669 3.331 13 H -0.196 1.196 14 H -0.191 1.191 15 H -0.182 1.182 16 O -0.234 6.234 17 C 0.125 3.875 18 F -0.158 7.158 19 C -0.224 4.224 20 C -0.146 4.146 21 H 0.149 0.851 22 C -0.162 4.162 23 Br -0.067 7.067 24 H 0.132 0.868 25 H 0.101 0.899 26 H 0.169 0.831 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.150 0.850 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.712 6.891 -4.145 11.142 hybrid contribution 0.587 0.348 1.812 1.936 sum 8.299 7.240 -2.333 11.258 Atomic orbital electron populations 1.24725 0.74664 1.07871 1.09298 1.45670 1.16695 1.13013 1.15197 1.24106 1.04648 0.81707 1.08171 1.24360 1.06937 1.00443 0.85557 1.24961 1.02048 1.01642 0.87149 1.20815 0.95518 0.84946 0.88186 0.91143 1.20703 0.85405 1.49220 1.04764 0.87851 1.24845 0.94792 0.95259 0.97393 1.69748 1.02457 1.41233 1.33645 0.87487 0.81017 0.79246 0.85346 1.19566 1.19054 1.18226 1.88376 1.30287 1.71698 1.33074 1.21208 0.77223 0.83096 1.05982 1.92939 1.50145 1.75769 1.96965 1.24374 1.06438 0.99132 0.92413 1.23314 1.01136 0.93341 0.96832 0.85122 1.24158 1.00870 1.00712 0.90441 1.97392 1.98645 1.83406 1.27218 0.86763 0.89872 0.83078 0.87130 0.86644 0.87113 0.84975 0.88591 0.86173 0.87183 0.87656 0.90303 0.86577 0.85444 0.87376 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.12 7.09 60.07 0.43 0.54 16 2 N -0.25 1.75 0.05 -395.62 -0.02 1.73 16 3 C -0.04 0.46 7.70 60.06 0.46 0.92 16 4 C -0.03 0.22 7.18 60.06 0.43 0.65 16 5 C -0.04 0.15 3.85 -3.82 -0.01 0.13 16 6 C 0.16 -0.10 1.78 -27.88 -0.05 -0.14 16 7 H 0.07 0.05 5.20 -51.93 -0.27 -0.22 16 8 C -0.56 -1.77 5.73 -34.44 -0.20 -1.97 16 9 H 0.10 0.60 7.44 -52.48 -0.39 0.21 16 10 C 0.09 0.51 3.78 -17.82 -0.07 0.44 16 11 N -0.84 -7.82 13.96 55.43 0.77 -7.05 16 12 Si 0.84 3.72 23.91 -169.99 -4.06 -0.34 16 13 H -0.27 -0.74 6.92 56.52 0.39 -0.34 16 14 H -0.27 -1.97 7.11 56.52 0.40 -1.57 16 15 H -0.26 -0.87 6.33 56.52 0.36 -0.51 16 16 O -0.31 0.51 5.11 -35.23 -0.18 0.33 16 17 C 0.18 -0.27 3.61 -26.73 -0.10 -0.36 16 18 F -0.18 0.12 17.30 2.25 0.04 0.16 16 19 C -0.19 0.36 9.05 -26.73 -0.24 0.12 16 20 C -0.13 0.26 5.77 -90.62 -0.52 -0.27 16 21 H 0.13 -0.36 8.14 -51.93 -0.42 -0.78 16 22 C -0.05 0.07 6.42 37.16 0.24 0.31 16 23 Br -0.15 -0.03 33.32 -68.01 -2.27 -2.29 16 24 H 0.11 -0.21 4.63 -51.93 -0.24 -0.45 16 25 H 0.08 -0.61 7.65 -51.93 -0.40 -1.01 16 26 H 0.15 -0.32 4.80 -51.93 -0.25 -0.57 16 27 H 0.11 -1.27 8.10 -51.93 -0.42 -1.69 16 28 H 0.12 -1.39 7.85 -51.93 -0.41 -1.80 16 29 H 0.11 -1.16 8.14 -51.93 -0.42 -1.59 16 30 H 0.13 -0.64 6.22 -51.93 -0.32 -0.96 16 31 H 0.10 -0.91 7.63 -51.92 -0.40 -1.31 16 32 H 0.12 -0.70 5.73 -51.93 -0.30 -1.00 16 33 H 0.11 -0.36 4.02 -51.93 -0.21 -0.57 16 34 H 0.11 -0.63 8.05 -51.93 -0.42 -1.05 16 35 H 0.29 2.65 8.31 -40.82 -0.34 2.31 16 36 H 0.12 -0.34 8.14 -51.93 -0.42 -0.76 16 37 H 0.13 -0.18 7.76 -51.93 -0.40 -0.58 16 38 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 39 H 0.11 -0.06 7.98 -51.93 -0.41 -0.48 16 LS Contribution 309.88 15.07 4.67 4.67 Total: 0.00 -11.43 309.88 -6.40 -17.83 By element: Atomic # 1 Polarization: -9.70 SS G_CDS: -5.72 Total: -15.42 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 0.37 Total: 0.38 kcal Atomic # 7 Polarization: -6.07 SS G_CDS: 0.75 Total: -5.31 kcal Atomic # 8 Polarization: 0.51 SS G_CDS: -0.18 Total: 0.33 kcal Atomic # 9 Polarization: 0.12 SS G_CDS: 0.04 Total: 0.16 kcal Atomic # 14 Polarization: 3.72 SS G_CDS: -4.06 Total: -0.34 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.27 Total: -2.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -11.43 -6.40 -17.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224457585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.989 kcal (2) G-P(sol) polarization free energy of solvation -11.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds