Wall clock time and date at job start Tue Mar 31 2020 13:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 109.47104 * 2 1 4 4 C 1.46892 * 109.47216 * 239.99534 * 2 1 3 5 5 C 1.46900 * 109.47104 * 119.99681 * 2 1 3 6 6 C 1.53001 * 109.47379 * 66.95834 * 5 2 1 7 7 H 1.08993 * 109.47008 * 182.43437 * 6 5 2 8 8 C 1.50699 * 109.46774 * 302.43533 * 6 5 2 9 9 H 1.08003 * 119.99982 * 112.74678 * 8 6 5 10 10 C 1.37878 * 119.99938 * 292.46419 * 8 6 5 11 11 N 1.31521 * 120.00187 * 180.27669 * 10 8 6 12 12 Si 1.86798 * 119.99982 * 0.28429 * 10 8 6 13 13 H 1.48494 * 109.47257 * 89.99545 * 12 10 8 14 14 H 1.48501 * 109.47055 * 209.99662 * 12 10 8 15 15 H 1.48496 * 109.47084 * 329.99101 * 12 10 8 16 16 O 1.42903 * 109.46923 * 62.43071 * 6 5 2 17 17 C 1.42894 * 113.99596 * 96.56971 * 16 6 5 18 18 F 1.39899 * 115.55367 * 272.25962 * 17 16 6 19 19 C 1.53005 * 117.50165 * 57.93173 * 17 16 6 20 20 C 1.52997 * 60.00008 * 107.48538 * 19 17 16 21 21 H 1.09002 * 117.49996 * 107.49098 * 20 19 17 22 22 C 1.53004 * 117.50363 * 252.51072 * 20 19 17 23 23 Br 1.96594 * 109.47417 * 136.65023 * 22 20 19 24 24 H 1.09000 * 109.46782 * 271.51654 * 1 2 3 25 25 H 1.09002 * 109.46838 * 31.51175 * 1 2 3 26 26 H 1.09001 * 109.47411 * 151.51561 * 1 2 3 27 27 H 1.09005 * 109.47127 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46808 * 299.99427 * 3 2 1 29 29 H 1.08996 * 109.47481 * 59.99414 * 3 2 1 30 30 H 1.08998 * 109.47454 * 330.04206 * 4 2 1 31 31 H 1.09009 * 109.47055 * 90.04028 * 4 2 1 32 32 H 1.08998 * 109.47601 * 210.04481 * 4 2 1 33 33 H 1.09003 * 109.47017 * 306.95717 * 5 2 1 34 34 H 1.09002 * 109.47091 * 186.96325 * 5 2 1 35 35 H 0.96992 * 119.99699 * 180.02562 * 11 10 8 36 36 H 1.08990 * 117.50178 * 214.97997 * 19 17 16 37 37 H 1.08999 * 117.49606 * 359.97438 * 19 17 16 38 38 H 1.09002 * 109.46944 * 256.65626 * 22 20 19 39 39 H 1.09007 * 109.46709 * 16.64991 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1993 5 6 1.9587 -0.6924 1.1995 6 6 1.5964 -2.1766 1.1153 7 1 1.9215 -2.6820 2.0246 8 6 0.1038 -2.3215 0.9661 9 1 -0.3122 -2.7049 0.0461 10 6 -0.7303 -1.9703 2.0062 11 7 -2.0326 -2.1019 1.8780 12 14 -0.0108 -1.3072 3.5974 13 1 0.0979 0.1713 3.5133 14 1 -0.8958 -1.6747 4.7318 15 1 1.3375 -1.8913 3.8122 16 8 2.2471 -2.7624 -0.0141 17 6 3.4737 -3.4245 0.3008 18 9 4.6161 -2.6171 0.2872 19 6 3.4216 -4.5574 1.3278 20 6 3.6292 -4.8771 -0.1539 21 1 4.6218 -5.2038 -0.4640 22 6 2.4597 -5.5095 -0.9110 23 35 2.2754 -4.6495 -2.6692 24 1 -0.3633 0.0272 1.0273 25 1 -0.3633 0.8761 -0.5371 26 1 -0.3634 -0.9033 -0.4901 27 1 3.0487 1.3850 -0.0005 28 1 1.5954 1.8988 -0.8901 29 1 1.5953 1.8989 0.8899 30 1 1.2404 -1.4567 -1.4964 31 1 2.0805 0.0263 -2.0097 32 1 2.9185 -1.1612 -0.9819 33 1 1.4973 -0.2554 2.0851 34 1 3.0416 -0.5858 1.2640 35 1 -2.6194 -1.8544 2.6096 36 1 4.2774 -4.6738 1.9926 37 1 2.4517 -4.7974 1.7636 38 1 2.6474 -6.5748 -1.0453 39 1 1.5408 -5.3715 -0.3409 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224457585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:48 Heat of formation + Delta-G solvation = 55.591259 kcal Electronic energy + Delta-G solvation = -22486.596014 eV Core-core repulsion = 19124.509707 eV Total energy + Delta-G solvation = -3362.086307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.76421 -42.89299 -39.55350 -36.72538 -35.11327 -32.07990 -31.78511 -29.66518 -29.40811 -27.83630 -27.74671 -24.48609 -23.72814 -22.20542 -21.89712 -19.62790 -18.80048 -17.97799 -17.67033 -17.41088 -17.01082 -16.78316 -16.10099 -15.42730 -15.29181 -14.71971 -14.66908 -14.48937 -14.25445 -14.19862 -13.86997 -13.82313 -13.68970 -13.42146 -13.05437 -13.02322 -12.84300 -12.80424 -12.67695 -12.28422 -11.93242 -11.81292 -11.36990 -11.04338 -10.82160 -10.76919 -10.68423 -10.54581 -8.46045 -6.50784 0.78347 1.01713 1.11051 1.27686 1.42829 1.91660 2.13460 2.44015 2.74896 2.94957 3.01280 3.12016 3.13996 3.39817 3.63564 3.83007 3.87989 4.01240 4.13818 4.18531 4.25050 4.31410 4.37307 4.52257 4.57095 4.62255 4.65125 4.69397 4.70926 4.76666 4.79015 4.97076 5.05083 5.19457 5.29151 5.69280 6.21418 6.62847 7.07690 8.64643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.240 5.240 3 C -0.050 4.050 4 C -0.031 4.031 5 C -0.029 4.029 6 C 0.160 3.840 7 H 0.062 0.938 8 C -0.523 4.523 9 H 0.071 0.929 10 C 0.057 3.943 11 N -0.905 5.905 12 Si 0.875 3.125 13 H -0.238 1.238 14 H -0.315 1.315 15 H -0.236 1.236 16 O -0.311 6.311 17 C 0.177 3.823 18 F -0.178 7.178 19 C -0.182 4.182 20 C -0.123 4.123 21 H 0.143 0.857 22 C -0.042 4.042 23 Br -0.163 7.163 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.272 0.728 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.948 8.146 -4.049 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N 0.102 4.898 3 C -0.190 4.190 4 C -0.172 4.172 5 C -0.152 4.152 6 C 0.103 3.897 7 H 0.080 0.920 8 C -0.560 4.560 9 H 0.089 0.911 10 C -0.147 4.147 11 N -0.540 5.540 12 Si 0.701 3.299 13 H -0.162 1.162 14 H -0.243 1.243 15 H -0.159 1.159 16 O -0.230 6.230 17 C 0.119 3.881 18 F -0.159 7.159 19 C -0.221 4.221 20 C -0.142 4.142 21 H 0.161 0.839 22 C -0.158 4.158 23 Br -0.083 7.083 24 H 0.106 0.894 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.148 0.852 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.635 8.502 -4.768 14.426 hybrid contribution -0.235 -0.218 1.902 1.929 sum 10.401 8.283 -2.866 13.602 Atomic orbital electron populations 1.24427 0.76250 1.07945 1.07593 1.45543 1.15273 1.14887 1.14059 1.24387 1.05905 0.79050 1.09661 1.24309 1.05488 1.01000 0.86354 1.24633 1.03937 0.98278 0.88313 1.20596 0.93056 0.87862 0.88200 0.92046 1.20704 0.87553 1.45364 1.02384 0.91109 1.25208 0.94383 0.95872 0.99267 1.69901 1.04126 1.46111 1.33907 0.87015 0.80334 0.81100 0.81500 1.16223 1.24281 1.15924 1.88413 1.30543 1.71890 1.32172 1.21258 0.77028 0.83193 1.06636 1.92937 1.50085 1.75814 1.97015 1.24399 1.06555 0.98577 0.92554 1.23359 1.01320 0.92808 0.96712 0.83883 1.24191 1.00648 1.01515 0.89404 1.97387 1.98704 1.83741 1.28447 0.89365 0.86414 0.86379 0.85208 0.84364 0.86613 0.87633 0.85151 0.86752 0.87637 0.84594 0.91831 0.85196 0.86372 0.85951 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 0.19 7.09 127.69 0.91 1.09 16 2 N -0.24 3.75 0.05 ******* -0.07 3.68 16 3 C -0.05 1.20 7.70 127.69 0.98 2.18 16 4 C -0.03 0.46 7.18 127.69 0.92 1.38 16 5 C -0.03 0.28 3.85 86.30 0.33 0.61 16 6 C 0.16 -0.15 1.78 29.85 0.05 -0.10 16 7 H 0.06 0.08 5.20 -2.39 -0.01 0.07 16 8 C -0.52 -4.46 5.73 25.60 0.15 -4.31 16 9 H 0.07 1.09 7.44 -2.91 -0.02 1.06 16 10 C 0.06 0.81 3.78 84.65 0.32 1.13 16 11 N -0.90 -20.78 13.96 21.45 0.30 -20.48 16 12 Si 0.87 8.56 23.91 68.60 1.64 10.20 16 13 H -0.24 -1.03 6.92 99.48 0.69 -0.34 16 14 H -0.31 -5.71 7.11 99.48 0.71 -5.00 16 15 H -0.24 -1.36 6.33 99.48 0.63 -0.73 16 16 O -0.31 0.97 5.11 -148.98 -0.76 0.21 16 17 C 0.18 -0.64 3.61 30.60 0.11 -0.53 16 18 F -0.18 0.56 17.30 44.97 0.78 1.33 16 19 C -0.18 0.82 9.05 30.60 0.28 1.09 16 20 C -0.12 0.56 5.77 -10.79 -0.06 0.50 16 21 H 0.14 -0.97 8.14 -2.39 -0.02 -0.99 16 22 C -0.04 0.11 6.42 71.98 0.46 0.57 16 23 Br -0.16 -0.14 33.32 -20.37 -0.68 -0.82 16 24 H 0.09 -0.24 4.63 -2.39 -0.01 -0.25 16 25 H 0.12 -1.87 7.65 -2.39 -0.02 -1.89 16 26 H 0.12 -0.23 4.80 -2.39 -0.01 -0.24 16 27 H 0.13 -3.51 8.10 -2.38 -0.02 -3.53 16 28 H 0.14 -3.87 7.85 -2.38 -0.02 -3.89 16 29 H 0.12 -2.79 8.14 -2.39 -0.02 -2.81 16 30 H 0.11 -0.93 6.22 -2.39 -0.01 -0.95 16 31 H 0.13 -2.83 7.63 -2.38 -0.02 -2.85 16 32 H 0.11 -1.52 5.73 -2.39 -0.01 -1.53 16 33 H 0.11 -0.86 4.02 -2.39 -0.01 -0.87 16 34 H 0.14 -2.06 8.05 -2.39 -0.02 -2.08 16 35 H 0.27 6.40 8.31 -92.71 -0.77 5.63 16 36 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.12 -0.28 7.76 -2.39 -0.02 -0.30 16 38 H 0.12 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.10 0.03 7.98 -2.38 -0.02 0.01 16 Total: 0.00 -31.96 309.88 6.60 -25.36 By element: Atomic # 1 Polarization: -24.05 SS G_CDS: 0.95 Total: -23.10 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 4.44 Total: 3.62 kcal Atomic # 7 Polarization: -17.03 SS G_CDS: 0.23 Total: -16.80 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: -0.76 Total: 0.21 kcal Atomic # 9 Polarization: 0.56 SS G_CDS: 0.78 Total: 1.33 kcal Atomic # 14 Polarization: 8.56 SS G_CDS: 1.64 Total: 10.20 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.68 Total: -0.82 kcal Total: -31.96 6.60 -25.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224457585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.952 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds