Wall clock time and date at job start Tue Mar 31 2020 13:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46907 * 109.46679 * 2 1 4 4 C 1.46892 * 109.47427 * 240.00182 * 2 1 3 5 5 C 1.46900 * 109.46855 * 119.99756 * 2 1 3 6 6 C 1.52997 * 109.47452 * 66.17089 * 5 2 1 7 7 H 1.09003 * 109.46927 * 56.27439 * 6 5 2 8 8 C 1.50693 * 109.47458 * 176.27325 * 6 5 2 9 9 H 1.07999 * 120.00497 * 239.99996 * 8 6 5 10 10 C 1.37878 * 119.99946 * 60.00021 * 8 6 5 11 11 N 1.31516 * 119.99845 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00368 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47086 * 90.00046 * 12 10 8 14 14 H 1.48499 * 109.47159 * 210.00239 * 12 10 8 15 15 H 1.48501 * 109.46703 * 330.00006 * 12 10 8 16 16 O 1.42901 * 109.46912 * 296.27805 * 6 5 2 17 17 C 1.42899 * 113.99769 * 149.99527 * 16 6 5 18 18 F 1.39899 * 115.55103 * 34.41768 * 17 16 6 19 19 C 1.53000 * 117.50181 * 248.74324 * 17 16 6 20 20 C 1.53004 * 117.49721 * 180.08186 * 17 16 6 21 21 H 1.08998 * 117.49992 * 214.98169 * 20 17 16 22 22 C 1.52998 * 117.49704 * 359.97438 * 20 17 16 23 23 Br 1.96602 * 109.46966 * 184.99768 * 22 20 17 24 24 H 1.09002 * 109.47281 * 290.04780 * 1 2 3 25 25 H 1.08994 * 109.46982 * 50.05647 * 1 2 3 26 26 H 1.09000 * 109.46730 * 170.05321 * 1 2 3 27 27 H 1.09001 * 109.46628 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47154 * 299.99803 * 3 2 1 29 29 H 1.08999 * 109.47001 * 59.99683 * 3 2 1 30 30 H 1.09006 * 109.46809 * 299.99420 * 4 2 1 31 31 H 1.08994 * 109.47262 * 59.99672 * 4 2 1 32 32 H 1.09001 * 109.47159 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.46670 * 186.17456 * 5 2 1 34 34 H 1.08999 * 109.47554 * 306.16690 * 5 2 1 35 35 H 0.97001 * 120.00296 * 180.02562 * 11 10 8 36 36 H 1.08996 * 117.49514 * 0.02562 * 19 17 16 37 37 H 1.09000 * 117.49832 * 145.02451 * 19 17 16 38 38 H 1.08999 * 109.47134 * 304.99585 * 22 20 17 39 39 H 1.09001 * 109.47564 * 64.99957 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9588 -0.6924 -1.1994 5 6 1.9587 -0.6925 1.1995 6 6 1.5792 -2.1727 1.1245 7 1 1.9745 -2.6029 0.2043 8 6 2.1598 -2.9008 2.3093 9 1 2.8550 -3.7131 2.1564 10 6 1.8034 -2.5301 3.5886 11 7 0.9565 -1.5413 3.7748 12 14 2.5236 -3.4321 5.0573 13 1 3.7805 -2.7643 5.4806 14 1 1.5496 -3.4100 6.1780 15 1 2.8131 -4.8391 4.6807 16 8 0.1560 -2.3008 1.1372 17 6 -0.3311 -3.4419 0.4282 18 9 0.4805 -4.5799 0.4859 19 6 -1.1051 -3.1912 -0.8675 20 6 -1.8457 -3.6557 0.3891 21 1 -2.2096 -4.6829 0.4079 22 6 -2.7225 -2.6317 1.1125 23 35 -4.5989 -3.2151 1.0499 24 1 -0.3634 0.3523 0.9654 25 1 -0.3633 0.6598 -0.7878 26 1 -0.3633 -1.0122 -0.1775 27 1 3.0486 1.3851 0.0005 28 1 1.5953 1.8989 -0.8900 29 1 1.5952 1.8989 0.8899 30 1 1.5955 -1.7202 -1.1993 31 1 1.5954 -0.1786 -2.0893 32 1 3.0488 -0.6928 -1.1991 33 1 3.0431 -0.5977 1.2564 34 1 1.5080 -0.2463 2.0860 35 1 0.7060 -1.2802 4.6748 36 1 -1.2423 -2.1559 -1.1794 37 1 -0.9822 -3.9131 -1.6749 38 1 -2.4024 -2.5485 2.1511 39 1 -2.6271 -1.6619 0.6241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224457586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:51 Heat of formation + Delta-G solvation = 45.258241 kcal Electronic energy + Delta-G solvation = -22173.753638 eV Core-core repulsion = 18811.219258 eV Total energy + Delta-G solvation = -3362.534380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.42708 -43.35381 -39.17890 -36.99158 -34.23501 -32.03159 -31.36572 -30.43163 -30.32147 -27.76463 -27.73508 -25.15226 -23.15779 -22.70604 -21.80812 -19.12042 -18.92271 -18.46928 -18.29625 -17.38851 -17.13424 -16.19497 -15.85680 -15.62761 -15.11591 -15.05396 -14.79813 -14.61062 -14.43212 -14.19286 -14.05452 -14.02724 -13.83189 -13.78474 -13.55607 -13.19269 -12.87755 -12.60571 -12.59534 -12.15811 -11.91088 -11.63963 -11.23435 -11.03881 -10.72883 -10.66063 -10.15035 -9.87042 -7.76963 -5.94870 0.26244 0.74468 2.06290 2.13665 2.27005 2.27845 2.28042 2.33271 2.36715 2.40099 3.02712 3.07064 3.10217 3.14427 3.32651 3.39267 3.46802 3.57479 3.60941 3.69881 3.70538 3.73854 3.80631 3.92187 4.09845 4.12061 4.24154 4.28027 4.44042 4.52579 4.56775 4.69408 4.94602 5.12480 6.15973 6.23825 6.38042 7.20854 7.88526 9.26421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.270 5.270 3 C -0.041 4.041 4 C -0.048 4.048 5 C -0.004 4.004 6 C 0.195 3.805 7 H 0.042 0.958 8 C -0.556 4.556 9 H 0.076 0.924 10 C 0.091 3.909 11 N -0.867 5.867 12 Si 0.902 3.098 13 H -0.273 1.273 14 H -0.278 1.278 15 H -0.267 1.267 16 O -0.333 6.333 17 C 0.229 3.771 18 F -0.164 7.164 19 C -0.210 4.210 20 C -0.143 4.143 21 H 0.131 0.869 22 C -0.037 4.037 23 Br -0.158 7.158 24 H 0.121 0.879 25 H 0.098 0.902 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.160 0.840 35 H 0.277 0.723 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 11.186 -13.328 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 N 0.071 4.929 3 C -0.183 4.183 4 C -0.189 4.189 5 C -0.122 4.122 6 C 0.140 3.860 7 H 0.060 0.940 8 C -0.592 4.592 9 H 0.094 0.906 10 C -0.118 4.118 11 N -0.501 5.501 12 Si 0.728 3.272 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.191 1.191 16 O -0.254 6.254 17 C 0.169 3.831 18 F -0.144 7.144 19 C -0.248 4.248 20 C -0.162 4.162 21 H 0.149 0.851 22 C -0.153 4.153 23 Br -0.078 7.078 24 H 0.140 0.860 25 H 0.117 0.883 26 H 0.152 0.848 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.178 0.822 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.916 11.219 -13.090 17.264 hybrid contribution 0.882 -0.584 0.838 1.349 sum 1.797 10.635 -12.251 16.322 Atomic orbital electron populations 1.24528 0.76821 1.09868 1.08026 1.46377 1.15440 1.14455 1.16623 1.24015 1.04964 0.81212 1.08113 1.24069 1.05131 1.02472 0.87267 1.24970 1.03497 0.97246 0.86516 1.20047 0.78774 0.88846 0.98297 0.93996 1.21233 1.29446 1.19042 0.89504 0.90567 1.24996 0.92850 0.94134 0.99771 1.69586 1.30064 1.26525 1.23973 0.86360 0.79287 0.80778 0.80818 1.19810 1.20263 1.19087 1.88258 1.25743 1.38111 1.73283 1.20968 0.87245 0.78908 0.95949 1.92986 1.74259 1.50581 1.96559 1.24576 1.03330 1.03657 0.93259 1.23391 0.92091 1.01600 0.99168 0.85110 1.24137 0.86004 0.99080 1.06064 1.97443 1.18765 1.92083 1.99488 0.86034 0.88321 0.84806 0.86824 0.87252 0.86504 0.86408 0.87169 0.86571 0.86212 0.82244 0.91286 0.87272 0.86807 0.86234 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.50 7.24 60.07 0.44 0.93 16 2 N -0.27 2.77 0.05 -395.62 -0.02 2.75 16 3 C -0.04 0.53 7.99 60.07 0.48 1.01 16 4 C -0.05 0.55 7.47 60.06 0.45 0.99 16 5 C 0.00 0.02 3.62 -3.83 -0.01 0.00 16 6 C 0.20 0.11 1.46 -27.89 -0.04 0.07 16 7 H 0.04 -0.04 5.51 -51.93 -0.29 -0.33 16 8 C -0.56 -3.85 8.43 -34.44 -0.29 -4.14 16 9 H 0.08 0.68 7.81 -52.49 -0.41 0.27 16 10 C 0.09 0.78 5.24 -17.82 -0.09 0.69 16 11 N -0.87 -6.80 10.91 55.43 0.60 -6.19 16 12 Si 0.90 8.21 29.54 -169.99 -5.02 3.19 16 13 H -0.27 -2.54 7.11 56.52 0.40 -2.14 16 14 H -0.28 -2.87 7.11 56.52 0.40 -2.47 16 15 H -0.27 -2.75 7.11 56.52 0.40 -2.35 16 16 O -0.33 -0.18 5.99 -35.23 -0.21 -0.39 16 17 C 0.23 0.17 3.84 -26.73 -0.10 0.07 16 18 F -0.16 -0.77 16.36 2.25 0.04 -0.73 16 19 C -0.21 0.69 9.57 -26.69 -0.26 0.43 16 20 C -0.14 0.04 5.77 -90.58 -0.52 -0.48 16 21 H 0.13 0.09 8.07 -51.93 -0.42 -0.33 16 22 C -0.04 0.02 6.41 37.16 0.24 0.26 16 23 Br -0.16 -0.22 33.89 -68.01 -2.30 -2.53 16 24 H 0.12 -0.97 7.90 -51.93 -0.41 -1.38 16 25 H 0.10 -1.25 7.99 -51.93 -0.42 -1.66 16 26 H 0.13 -1.04 2.75 -51.93 -0.14 -1.18 16 27 H 0.11 -1.51 8.10 -51.93 -0.42 -1.94 16 28 H 0.11 -1.61 8.07 -51.93 -0.42 -2.03 16 29 H 0.12 -1.42 8.14 -51.93 -0.42 -1.85 16 30 H 0.12 -1.11 5.90 -51.93 -0.31 -1.42 16 31 H 0.11 -1.54 8.14 -51.93 -0.42 -1.96 16 32 H 0.12 -1.42 8.14 -51.93 -0.42 -1.84 16 33 H 0.12 -0.61 8.07 -51.93 -0.42 -1.03 16 34 H 0.16 -0.23 5.97 -51.93 -0.31 -0.54 16 35 H 0.28 2.41 8.31 -40.82 -0.34 2.07 16 36 H 0.11 -0.70 6.26 -51.93 -0.32 -1.02 16 37 H 0.11 -0.41 8.14 -51.93 -0.42 -0.83 16 38 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.10 -0.31 7.88 -51.93 -0.41 -0.72 16 LS Contribution 324.41 15.07 4.89 4.89 Total: 0.00 -16.42 324.41 -7.68 -24.10 By element: Atomic # 1 Polarization: -18.99 SS G_CDS: -5.94 Total: -24.93 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 0.28 Total: -0.17 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: 0.59 Total: -3.44 kcal Atomic # 8 Polarization: -0.18 SS G_CDS: -0.21 Total: -0.39 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.04 Total: -0.73 kcal Atomic # 14 Polarization: 8.21 SS G_CDS: -5.02 Total: 3.19 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.30 Total: -2.53 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -16.42 -7.68 -24.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224457586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.362 kcal (2) G-P(sol) polarization free energy of solvation -16.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds