Wall clock time and date at job start Tue Mar 31 2020 13:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46907 * 109.46679 * 2 1 4 4 C 1.46892 * 109.47427 * 240.00182 * 2 1 3 5 5 C 1.46900 * 109.46855 * 119.99756 * 2 1 3 6 6 C 1.52997 * 109.47452 * 66.17089 * 5 2 1 7 7 H 1.09003 * 109.46927 * 56.27439 * 6 5 2 8 8 C 1.50693 * 109.47458 * 176.27325 * 6 5 2 9 9 H 1.07999 * 120.00497 * 239.99996 * 8 6 5 10 10 C 1.37878 * 119.99946 * 60.00021 * 8 6 5 11 11 N 1.31516 * 119.99845 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00368 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47086 * 90.00046 * 12 10 8 14 14 H 1.48499 * 109.47159 * 210.00239 * 12 10 8 15 15 H 1.48501 * 109.46703 * 330.00006 * 12 10 8 16 16 O 1.42901 * 109.46912 * 296.27805 * 6 5 2 17 17 C 1.42899 * 113.99769 * 149.99527 * 16 6 5 18 18 F 1.39899 * 115.55103 * 34.41768 * 17 16 6 19 19 C 1.53000 * 117.50181 * 248.74324 * 17 16 6 20 20 C 1.53004 * 117.49721 * 180.08186 * 17 16 6 21 21 H 1.08998 * 117.49992 * 214.98169 * 20 17 16 22 22 C 1.52998 * 117.49704 * 359.97438 * 20 17 16 23 23 Br 1.96602 * 109.46966 * 184.99768 * 22 20 17 24 24 H 1.09002 * 109.47281 * 290.04780 * 1 2 3 25 25 H 1.08994 * 109.46982 * 50.05647 * 1 2 3 26 26 H 1.09000 * 109.46730 * 170.05321 * 1 2 3 27 27 H 1.09001 * 109.46628 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47154 * 299.99803 * 3 2 1 29 29 H 1.08999 * 109.47001 * 59.99683 * 3 2 1 30 30 H 1.09006 * 109.46809 * 299.99420 * 4 2 1 31 31 H 1.08994 * 109.47262 * 59.99672 * 4 2 1 32 32 H 1.09001 * 109.47159 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.46670 * 186.17456 * 5 2 1 34 34 H 1.08999 * 109.47554 * 306.16690 * 5 2 1 35 35 H 0.97001 * 120.00296 * 180.02562 * 11 10 8 36 36 H 1.08996 * 117.49514 * 0.02562 * 19 17 16 37 37 H 1.09000 * 117.49832 * 145.02451 * 19 17 16 38 38 H 1.08999 * 109.47134 * 304.99585 * 22 20 17 39 39 H 1.09001 * 109.47564 * 64.99957 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9588 -0.6924 -1.1994 5 6 1.9587 -0.6925 1.1995 6 6 1.5792 -2.1727 1.1245 7 1 1.9745 -2.6029 0.2043 8 6 2.1598 -2.9008 2.3093 9 1 2.8550 -3.7131 2.1564 10 6 1.8034 -2.5301 3.5886 11 7 0.9565 -1.5413 3.7748 12 14 2.5236 -3.4321 5.0573 13 1 3.7805 -2.7643 5.4806 14 1 1.5496 -3.4100 6.1780 15 1 2.8131 -4.8391 4.6807 16 8 0.1560 -2.3008 1.1372 17 6 -0.3311 -3.4419 0.4282 18 9 0.4805 -4.5799 0.4859 19 6 -1.1051 -3.1912 -0.8675 20 6 -1.8457 -3.6557 0.3891 21 1 -2.2096 -4.6829 0.4079 22 6 -2.7225 -2.6317 1.1125 23 35 -4.5989 -3.2151 1.0499 24 1 -0.3634 0.3523 0.9654 25 1 -0.3633 0.6598 -0.7878 26 1 -0.3633 -1.0122 -0.1775 27 1 3.0486 1.3851 0.0005 28 1 1.5953 1.8989 -0.8900 29 1 1.5952 1.8989 0.8899 30 1 1.5955 -1.7202 -1.1993 31 1 1.5954 -0.1786 -2.0893 32 1 3.0488 -0.6928 -1.1991 33 1 3.0431 -0.5977 1.2564 34 1 1.5080 -0.2463 2.0860 35 1 0.7060 -1.2802 4.6748 36 1 -1.2423 -2.1559 -1.1794 37 1 -0.9822 -3.9131 -1.6749 38 1 -2.4024 -2.5485 2.1511 39 1 -2.6271 -1.6619 0.6241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224457586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:51 Heat of formation + Delta-G solvation = 42.095616 kcal Electronic energy + Delta-G solvation = -22173.890780 eV Core-core repulsion = 18811.219258 eV Total energy + Delta-G solvation = -3362.671522 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.61114 -42.64643 -39.10991 -36.99969 -34.64169 -32.04580 -31.22282 -29.51794 -29.43226 -27.79956 -27.70165 -24.83440 -22.90048 -22.58115 -21.80097 -19.22098 -18.52250 -17.92258 -17.63233 -17.34022 -16.96014 -16.62536 -15.99969 -15.63742 -14.86493 -14.81205 -14.48687 -14.30114 -14.13911 -13.89536 -13.62104 -13.29665 -13.23529 -13.20492 -13.12915 -13.04723 -12.95574 -12.95178 -12.70735 -12.52948 -12.29440 -11.81199 -11.38132 -11.20288 -10.87118 -10.79786 -10.70782 -9.88887 -8.38553 -6.50618 0.74921 1.05228 1.29596 1.41843 1.48626 2.21818 2.29693 2.45145 2.86969 3.06100 3.11837 3.17033 3.28709 3.50027 3.86106 3.99538 4.03209 4.16851 4.28097 4.31647 4.34399 4.42341 4.44245 4.52182 4.52691 4.62040 4.65809 4.71603 4.79967 4.83906 4.85789 4.98979 5.07686 5.28883 5.60640 5.86299 6.21876 6.66244 7.29602 8.60623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.257 5.257 3 C -0.043 4.043 4 C -0.054 4.054 5 C 0.017 3.983 6 C 0.195 3.805 7 H 0.058 0.942 8 C -0.563 4.563 9 H 0.045 0.955 10 C 0.077 3.923 11 N -0.862 5.862 12 Si 0.908 3.092 13 H -0.274 1.274 14 H -0.296 1.296 15 H -0.290 1.290 16 O -0.328 6.328 17 C 0.194 3.806 18 F -0.195 7.195 19 C -0.159 4.159 20 C -0.161 4.161 21 H 0.114 0.886 22 C -0.023 4.023 23 Br -0.179 7.179 24 H 0.103 0.897 25 H 0.143 0.857 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.143 0.857 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.267 0.733 36 H 0.152 0.848 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.471 13.894 -16.773 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 N 0.085 4.915 3 C -0.184 4.184 4 C -0.195 4.195 5 C -0.104 4.104 6 C 0.139 3.861 7 H 0.076 0.924 8 C -0.601 4.601 9 H 0.063 0.937 10 C -0.130 4.130 11 N -0.498 5.498 12 Si 0.738 3.262 13 H -0.200 1.200 14 H -0.222 1.222 15 H -0.216 1.216 16 O -0.249 6.249 17 C 0.135 3.865 18 F -0.176 7.176 19 C -0.196 4.196 20 C -0.181 4.181 21 H 0.132 0.868 22 C -0.139 4.139 23 Br -0.099 7.099 24 H 0.121 0.879 25 H 0.161 0.839 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.161 0.839 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.077 0.923 36 H 0.169 0.831 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.659 13.935 -16.540 21.638 hybrid contribution 0.988 -1.500 1.862 2.587 sum 1.647 12.435 -14.679 19.308 Atomic orbital electron populations 1.24536 0.76787 1.09515 1.08717 1.45963 1.15363 1.15483 1.14679 1.24216 1.05643 0.79060 1.09448 1.24279 1.05924 1.01737 0.87579 1.24110 1.03741 0.94367 0.88212 1.19978 0.78410 0.91596 0.96092 0.92387 1.21451 1.28432 1.18632 0.91630 0.93693 1.24997 0.93830 0.94662 0.99545 1.69637 1.30741 1.26663 1.22753 0.86355 0.78806 0.79603 0.81427 1.19954 1.22234 1.21631 1.88246 1.25028 1.37443 1.74185 1.21501 0.87185 0.78225 0.99638 1.92916 1.75212 1.52483 1.96951 1.24662 0.97604 1.06188 0.91182 1.23423 0.91534 1.01206 1.01946 0.86779 1.24106 0.84350 1.00403 1.05007 1.97438 1.20530 1.92433 1.99463 0.87875 0.83882 0.86717 0.85993 0.83881 0.87231 0.88418 0.83293 0.85705 0.85346 0.84847 0.92306 0.83084 0.85871 0.88700 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.21 7.24 127.69 0.92 2.14 16 2 N -0.26 5.94 0.05 ******* -0.07 5.88 16 3 C -0.04 1.25 7.99 127.69 1.02 2.27 16 4 C -0.05 1.43 7.47 127.69 0.95 2.38 16 5 C 0.02 -0.15 3.62 86.30 0.31 0.16 16 6 C 0.19 0.33 1.46 29.84 0.04 0.37 16 7 H 0.06 -0.11 5.51 -2.39 -0.01 -0.12 16 8 C -0.56 -9.19 8.43 25.60 0.22 -8.98 16 9 H 0.04 0.96 7.81 -2.91 -0.02 0.94 16 10 C 0.08 1.51 5.24 84.65 0.44 1.96 16 11 N -0.86 -15.35 10.91 21.45 0.23 -15.12 16 12 Si 0.91 19.73 29.54 68.60 2.03 21.76 16 13 H -0.27 -5.85 7.11 99.48 0.71 -5.14 16 14 H -0.30 -7.21 7.11 99.48 0.71 -6.51 16 15 H -0.29 -7.28 7.11 99.48 0.71 -6.57 16 16 O -0.33 -0.46 5.99 -148.98 -0.89 -1.35 16 17 C 0.19 0.35 3.84 30.60 0.12 0.47 16 18 F -0.19 -2.20 16.36 44.97 0.74 -1.46 16 19 C -0.16 1.37 9.57 30.62 0.29 1.67 16 20 C -0.16 0.07 5.77 -10.77 -0.06 0.01 16 21 H 0.11 0.32 8.07 -2.39 -0.02 0.30 16 22 C -0.02 0.03 6.41 71.98 0.46 0.49 16 23 Br -0.18 -0.56 33.89 -20.37 -0.69 -1.25 16 24 H 0.10 -1.81 7.90 -2.39 -0.02 -1.82 16 25 H 0.14 -4.39 7.99 -2.39 -0.02 -4.41 16 26 H 0.11 -2.10 2.75 -2.39 -0.01 -2.10 16 27 H 0.12 -3.63 8.10 -2.39 -0.02 -3.65 16 28 H 0.14 -4.96 8.07 -2.39 -0.02 -4.98 16 29 H 0.11 -2.90 8.14 -2.39 -0.02 -2.92 16 30 H 0.10 -2.09 5.90 -2.38 -0.01 -2.10 16 31 H 0.15 -4.98 8.14 -2.39 -0.02 -5.00 16 32 H 0.12 -3.43 8.14 -2.39 -0.02 -3.45 16 33 H 0.13 -1.38 8.07 -2.39 -0.02 -1.40 16 34 H 0.13 -0.33 5.97 -2.39 -0.01 -0.34 16 35 H 0.27 5.29 8.31 -92.71 -0.77 4.52 16 36 H 0.15 -2.60 6.26 -2.39 -0.01 -2.61 16 37 H 0.12 -1.19 8.14 -2.39 -0.02 -1.21 16 38 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.13 -1.07 7.88 -2.39 -0.02 -1.09 16 Total: 0.00 -45.03 324.41 7.10 -37.92 By element: Atomic # 1 Polarization: -50.35 SS G_CDS: 1.03 Total: -49.32 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 4.73 Total: 2.94 kcal Atomic # 7 Polarization: -9.41 SS G_CDS: 0.17 Total: -9.24 kcal Atomic # 8 Polarization: -0.46 SS G_CDS: -0.89 Total: -1.35 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.74 Total: -1.46 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: 2.03 Total: 21.76 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.69 Total: -1.25 kcal Total: -45.03 7.10 -37.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224457586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.018 kcal (2) G-P(sol) polarization free energy of solvation -45.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds