Wall clock time and date at job start Tue Mar 31 2020 13:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46902 * 109.47253 * 2 1 4 4 C 1.46902 * 109.47303 * 240.00446 * 2 1 3 5 5 C 1.46897 * 109.47409 * 120.00211 * 2 1 3 6 6 C 1.52998 * 109.46995 * 65.62184 * 5 2 1 7 7 H 1.09008 * 109.46808 * 316.29388 * 6 5 2 8 8 C 1.50693 * 109.47576 * 76.29831 * 6 5 2 9 9 H 1.08000 * 119.99898 * 264.63377 * 8 6 5 10 10 C 1.37872 * 120.00336 * 84.62893 * 8 6 5 11 11 N 1.31519 * 120.00097 * 186.16575 * 10 8 6 12 12 Si 1.86799 * 119.99944 * 6.44121 * 10 8 6 13 13 H 1.48499 * 109.47063 * 85.60715 * 12 10 8 14 14 H 1.48496 * 109.47425 * 205.60727 * 12 10 8 15 15 H 1.48504 * 109.46973 * 325.61145 * 12 10 8 16 16 O 1.42902 * 109.46998 * 196.30093 * 6 5 2 17 17 C 1.42902 * 114.00009 * 149.99835 * 16 6 5 18 18 F 1.39902 * 115.55034 * 34.27582 * 17 16 6 19 19 C 1.53004 * 117.49824 * 248.60344 * 17 16 6 20 20 C 1.52997 * 117.49830 * 179.97438 * 17 16 6 21 21 H 1.09003 * 117.49875 * 359.97438 * 20 17 16 22 22 C 1.53000 * 117.49960 * 214.98042 * 20 17 16 23 23 Br 1.96596 * 109.47443 * 65.00042 * 22 20 17 24 24 H 1.08998 * 109.47428 * 301.52028 * 1 2 3 25 25 H 1.09004 * 109.47140 * 61.51503 * 1 2 3 26 26 H 1.08994 * 109.47236 * 181.51846 * 1 2 3 27 27 H 1.09002 * 109.47368 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47247 * 300.00215 * 3 2 1 29 29 H 1.09010 * 109.46843 * 60.00172 * 3 2 1 30 30 H 1.08997 * 109.46893 * 312.21151 * 4 2 1 31 31 H 1.08996 * 109.47205 * 72.21407 * 4 2 1 32 32 H 1.08998 * 109.47048 * 192.21095 * 4 2 1 33 33 H 1.08996 * 109.47147 * 305.62249 * 5 2 1 34 34 H 1.09002 * 109.47341 * 185.62190 * 5 2 1 35 35 H 0.97005 * 119.99889 * 180.02562 * 11 10 8 36 36 H 1.09000 * 117.49454 * 359.97438 * 19 17 16 37 37 H 1.08997 * 117.49348 * 145.01918 * 19 17 16 38 38 H 1.09008 * 109.47115 * 185.00064 * 22 20 17 39 39 H 1.09005 * 109.47099 * 304.99707 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6924 -1.1995 5 6 1.9586 -0.6925 1.1994 6 6 1.5673 -2.1700 1.1306 7 1 0.5347 -2.2570 0.7924 8 6 2.4747 -2.8856 0.1635 9 1 2.1663 -3.0281 -0.8617 10 6 3.6985 -3.3584 0.5872 11 7 4.5409 -3.8740 -0.2813 12 14 4.1571 -3.2736 2.3961 13 1 3.6262 -4.4698 3.0979 14 1 5.6355 -3.2363 2.5308 15 1 3.5740 -2.0474 2.9976 16 8 1.6949 -2.7573 2.4271 17 6 0.7851 -3.8321 2.6705 18 9 0.4797 -4.6272 1.5606 19 6 -0.3230 -3.6003 3.6998 20 6 0.8531 -4.5199 4.0354 21 1 1.5921 -4.1529 4.7477 22 6 0.5819 -6.0249 4.0824 23 35 1.9902 -6.9758 3.0935 24 1 -0.3634 0.5372 0.8760 25 1 -0.3633 0.4901 -0.9033 26 1 -0.3633 -1.0272 0.0272 27 1 3.0486 1.3850 0.0005 28 1 1.5953 1.8989 -0.8899 29 1 1.5953 1.8988 0.8901 30 1 1.4288 -1.6379 -1.3149 31 1 1.7838 -0.0685 -2.0760 32 1 3.0267 -0.8845 -1.0975 33 1 1.5155 -0.2402 2.0865 34 1 3.0440 -0.6061 1.2511 35 1 5.4018 -4.2070 0.0170 36 1 -0.3576 -2.6282 4.1917 37 1 -1.2897 -4.0676 3.5124 38 1 0.5761 -6.3609 5.1194 39 1 -0.3862 -6.2341 3.6272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224457587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:54 Heat of formation + Delta-G solvation = 57.347616 kcal Electronic energy + Delta-G solvation = -22119.224743 eV Core-core repulsion = 18757.214597 eV Total energy + Delta-G solvation = -3362.010145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.35704 -43.43410 -39.28108 -37.17677 -34.07495 -32.18042 -31.54809 -30.54262 -30.26553 -27.95615 -27.57809 -24.81048 -23.38408 -22.50129 -21.71902 -19.88833 -18.66417 -18.50887 -18.08420 -17.83929 -17.01886 -16.45601 -15.74389 -15.28769 -15.12105 -15.04816 -14.92715 -14.34178 -14.31259 -14.27107 -14.17575 -13.99130 -13.83120 -13.74595 -13.56921 -13.48793 -13.28158 -12.84326 -12.46726 -12.03616 -11.85269 -11.59590 -10.93247 -10.67488 -10.47543 -10.41232 -9.91286 -9.82940 -7.59293 -5.86055 0.15619 0.88759 1.79364 2.18969 2.22158 2.25777 2.31480 2.44220 2.53218 2.67527 3.03723 3.09862 3.14235 3.16306 3.32062 3.44951 3.50535 3.53329 3.60542 3.63764 3.68345 3.78576 3.91791 3.92147 4.03115 4.07930 4.23131 4.31307 4.46494 4.53773 4.61265 4.67320 4.82142 4.93250 5.67838 6.09654 6.76638 7.21927 7.95328 9.45809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.256 5.256 3 C -0.039 4.039 4 C -0.035 4.035 5 C -0.005 4.005 6 C 0.167 3.833 7 H 0.052 0.948 8 C -0.596 4.596 9 H 0.094 0.906 10 C 0.097 3.903 11 N -0.854 5.854 12 Si 0.907 3.093 13 H -0.253 1.253 14 H -0.314 1.314 15 H -0.266 1.266 16 O -0.331 6.331 17 C 0.223 3.777 18 F -0.151 7.151 19 C -0.190 4.190 20 C -0.147 4.147 21 H 0.130 0.870 22 C -0.059 4.059 23 Br -0.132 7.132 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.278 0.722 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 16.003 0.418 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.085 4.915 3 C -0.181 4.181 4 C -0.175 4.175 5 C -0.127 4.127 6 C 0.111 3.889 7 H 0.070 0.930 8 C -0.631 4.631 9 H 0.111 0.889 10 C -0.115 4.115 11 N -0.484 5.484 12 Si 0.741 3.259 13 H -0.177 1.177 14 H -0.244 1.244 15 H -0.194 1.194 16 O -0.252 6.252 17 C 0.165 3.835 18 F -0.131 7.131 19 C -0.229 4.229 20 C -0.167 4.167 21 H 0.148 0.852 22 C -0.175 4.175 23 Br -0.051 7.051 24 H 0.130 0.870 25 H 0.133 0.867 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.155 0.845 31 H 0.110 0.890 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.075 15.559 0.102 18.537 hybrid contribution -0.029 -0.057 0.988 0.990 sum -10.103 15.503 1.091 18.536 Atomic orbital electron populations 1.24109 0.77735 1.09186 1.07887 1.45712 1.14326 1.14446 1.17028 1.24046 1.05734 0.80383 1.07927 1.24687 1.08105 1.01076 0.83611 1.24384 1.04948 0.98747 0.84620 1.20303 0.98649 0.87370 0.82625 0.93029 1.21142 1.01862 1.42746 0.97317 0.88877 1.25011 0.95358 0.92205 0.98937 1.69857 1.08348 1.34750 1.35489 0.86301 0.74901 0.80960 0.83760 1.17722 1.24412 1.19446 1.88110 1.54880 1.45886 1.36365 1.20904 0.94366 0.87235 0.81007 1.93015 1.92725 1.73551 1.53847 1.24391 0.94775 1.01943 1.01767 1.23266 1.01857 0.93019 0.98546 0.85198 1.24182 0.97626 0.92992 1.02658 1.97538 1.53403 1.77251 1.76866 0.86985 0.86665 0.86032 0.86300 0.86656 0.87000 0.84493 0.88976 0.84690 0.87743 0.85542 0.91159 0.86540 0.87017 0.87116 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.59 7.78 60.06 0.47 1.06 16 2 N -0.26 2.68 0.05 -395.63 -0.02 2.66 16 3 C -0.04 0.52 7.98 60.07 0.48 1.00 16 4 C -0.03 0.27 6.66 60.07 0.40 0.67 16 5 C -0.01 0.03 3.43 -3.83 -0.01 0.02 16 6 C 0.17 -0.01 1.57 -27.89 -0.04 -0.06 16 7 H 0.05 -0.11 5.35 -51.92 -0.28 -0.39 16 8 C -0.60 -3.21 6.19 -34.45 -0.21 -3.42 16 9 H 0.09 0.62 6.18 -52.49 -0.32 0.30 16 10 C 0.10 0.94 5.47 -17.82 -0.10 0.84 16 11 N -0.85 -11.39 13.96 55.43 0.77 -10.61 16 12 Si 0.91 7.96 24.36 -169.99 -4.14 3.82 16 13 H -0.25 -2.40 6.84 56.52 0.39 -2.01 16 14 H -0.31 -3.64 7.11 56.52 0.40 -3.24 16 15 H -0.27 -1.58 5.79 56.52 0.33 -1.25 16 16 O -0.33 -0.92 5.00 -35.23 -0.18 -1.09 16 17 C 0.22 0.58 3.28 -26.73 -0.09 0.49 16 18 F -0.15 -0.81 15.33 2.25 0.03 -0.78 16 19 C -0.19 0.24 10.11 -26.72 -0.27 -0.03 16 20 C -0.15 -0.22 5.77 -90.61 -0.52 -0.75 16 21 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 22 C -0.06 -0.08 6.56 37.16 0.24 0.16 16 23 Br -0.13 -0.80 32.92 -68.01 -2.24 -3.04 16 24 H 0.11 -1.55 8.13 -51.93 -0.42 -1.97 16 25 H 0.11 -1.64 8.14 -51.93 -0.42 -2.07 16 26 H 0.12 -1.29 5.92 -51.93 -0.31 -1.60 16 27 H 0.12 -1.49 8.11 -51.93 -0.42 -1.91 16 28 H 0.11 -1.72 8.05 -51.93 -0.42 -2.14 16 29 H 0.11 -1.61 8.14 -51.92 -0.42 -2.04 16 30 H 0.14 -0.72 5.17 -51.93 -0.27 -0.98 16 31 H 0.09 -0.99 7.95 -51.93 -0.41 -1.40 16 32 H 0.13 -0.61 7.20 -51.93 -0.37 -0.99 16 33 H 0.10 -0.82 8.09 -51.93 -0.42 -1.24 16 34 H 0.13 -0.49 7.12 -51.93 -0.37 -0.86 16 35 H 0.28 3.79 8.31 -40.82 -0.34 3.45 16 36 H 0.12 -0.36 8.14 -51.93 -0.42 -0.79 16 37 H 0.11 -0.27 8.08 -51.93 -0.42 -0.69 16 38 H 0.11 -0.07 8.14 -51.92 -0.42 -0.49 16 39 H 0.10 0.02 7.94 -51.93 -0.41 -0.39 16 LS Contribution 318.46 15.07 4.80 4.80 Total: 0.00 -20.36 318.46 -6.81 -27.17 By element: Atomic # 1 Polarization: -16.72 SS G_CDS: -6.18 Total: -22.90 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 0.34 Total: -0.02 kcal Atomic # 7 Polarization: -8.70 SS G_CDS: 0.75 Total: -7.95 kcal Atomic # 8 Polarization: -0.92 SS G_CDS: -0.18 Total: -1.09 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 0.03 Total: -0.78 kcal Atomic # 14 Polarization: 7.96 SS G_CDS: -4.14 Total: 3.82 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -2.24 Total: -3.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -20.36 -6.81 -27.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224457587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.514 kcal (2) G-P(sol) polarization free energy of solvation -20.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds