Wall clock time and date at job start Tue Mar 31 2020 13:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46902 * 109.47253 * 2 1 4 4 C 1.46902 * 109.47303 * 240.00446 * 2 1 3 5 5 C 1.46897 * 109.47409 * 120.00211 * 2 1 3 6 6 C 1.52998 * 109.46995 * 65.62184 * 5 2 1 7 7 H 1.09008 * 109.46808 * 316.29388 * 6 5 2 8 8 C 1.50693 * 109.47576 * 76.29831 * 6 5 2 9 9 H 1.08000 * 119.99898 * 264.63377 * 8 6 5 10 10 C 1.37872 * 120.00336 * 84.62893 * 8 6 5 11 11 N 1.31519 * 120.00097 * 186.16575 * 10 8 6 12 12 Si 1.86799 * 119.99944 * 6.44121 * 10 8 6 13 13 H 1.48499 * 109.47063 * 85.60715 * 12 10 8 14 14 H 1.48496 * 109.47425 * 205.60727 * 12 10 8 15 15 H 1.48504 * 109.46973 * 325.61145 * 12 10 8 16 16 O 1.42902 * 109.46998 * 196.30093 * 6 5 2 17 17 C 1.42902 * 114.00009 * 149.99835 * 16 6 5 18 18 F 1.39902 * 115.55034 * 34.27582 * 17 16 6 19 19 C 1.53004 * 117.49824 * 248.60344 * 17 16 6 20 20 C 1.52997 * 117.49830 * 179.97438 * 17 16 6 21 21 H 1.09003 * 117.49875 * 359.97438 * 20 17 16 22 22 C 1.53000 * 117.49960 * 214.98042 * 20 17 16 23 23 Br 1.96596 * 109.47443 * 65.00042 * 22 20 17 24 24 H 1.08998 * 109.47428 * 301.52028 * 1 2 3 25 25 H 1.09004 * 109.47140 * 61.51503 * 1 2 3 26 26 H 1.08994 * 109.47236 * 181.51846 * 1 2 3 27 27 H 1.09002 * 109.47368 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47247 * 300.00215 * 3 2 1 29 29 H 1.09010 * 109.46843 * 60.00172 * 3 2 1 30 30 H 1.08997 * 109.46893 * 312.21151 * 4 2 1 31 31 H 1.08996 * 109.47205 * 72.21407 * 4 2 1 32 32 H 1.08998 * 109.47048 * 192.21095 * 4 2 1 33 33 H 1.08996 * 109.47147 * 305.62249 * 5 2 1 34 34 H 1.09002 * 109.47341 * 185.62190 * 5 2 1 35 35 H 0.97005 * 119.99889 * 180.02562 * 11 10 8 36 36 H 1.09000 * 117.49454 * 359.97438 * 19 17 16 37 37 H 1.08997 * 117.49348 * 145.01918 * 19 17 16 38 38 H 1.09008 * 109.47115 * 185.00064 * 22 20 17 39 39 H 1.09005 * 109.47099 * 304.99707 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6924 -1.1995 5 6 1.9586 -0.6925 1.1994 6 6 1.5673 -2.1700 1.1306 7 1 0.5347 -2.2570 0.7924 8 6 2.4747 -2.8856 0.1635 9 1 2.1663 -3.0281 -0.8617 10 6 3.6985 -3.3584 0.5872 11 7 4.5409 -3.8740 -0.2813 12 14 4.1571 -3.2736 2.3961 13 1 3.6262 -4.4698 3.0979 14 1 5.6355 -3.2363 2.5308 15 1 3.5740 -2.0474 2.9976 16 8 1.6949 -2.7573 2.4271 17 6 0.7851 -3.8321 2.6705 18 9 0.4797 -4.6272 1.5606 19 6 -0.3230 -3.6003 3.6998 20 6 0.8531 -4.5199 4.0354 21 1 1.5921 -4.1529 4.7477 22 6 0.5819 -6.0249 4.0824 23 35 1.9902 -6.9758 3.0935 24 1 -0.3634 0.5372 0.8760 25 1 -0.3633 0.4901 -0.9033 26 1 -0.3633 -1.0272 0.0272 27 1 3.0486 1.3850 0.0005 28 1 1.5953 1.8989 -0.8899 29 1 1.5953 1.8988 0.8901 30 1 1.4288 -1.6379 -1.3149 31 1 1.7838 -0.0685 -2.0760 32 1 3.0267 -0.8845 -1.0975 33 1 1.5155 -0.2402 2.0865 34 1 3.0440 -0.6061 1.2511 35 1 5.4018 -4.2070 0.0170 36 1 -0.3576 -2.6282 4.1917 37 1 -1.2897 -4.0676 3.5124 38 1 0.5761 -6.3609 5.1194 39 1 -0.3862 -6.2341 3.6272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224457587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:53 Heat of formation + Delta-G solvation = 48.193682 kcal Electronic energy + Delta-G solvation = -22119.621687 eV Core-core repulsion = 18757.214597 eV Total energy + Delta-G solvation = -3362.407090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.60674 -42.73420 -39.36239 -37.24493 -34.62495 -32.26822 -31.56686 -29.68249 -29.53880 -27.90477 -27.59733 -24.65468 -23.16974 -22.48653 -21.76742 -19.96542 -18.36409 -17.93845 -17.78420 -17.54069 -17.14281 -16.66162 -15.95024 -15.31542 -15.21221 -14.74339 -14.52604 -14.35464 -14.20813 -14.02354 -13.78425 -13.73332 -13.46745 -13.23658 -13.20473 -13.08998 -12.98502 -12.83030 -12.60012 -12.42648 -12.24092 -11.77000 -11.16467 -11.10810 -10.95143 -10.76538 -10.53688 -10.01870 -8.35444 -6.50777 0.72139 0.90102 1.43475 1.52532 1.66957 2.23110 2.41078 2.51821 2.91096 2.96834 3.05937 3.10671 3.26152 3.51181 3.73298 3.85932 3.94578 4.07196 4.21509 4.24743 4.27007 4.33373 4.40350 4.42602 4.52765 4.56471 4.64560 4.66809 4.73342 4.78962 4.83365 4.95919 4.96987 5.16931 5.26409 5.84826 6.15239 6.62643 7.30077 8.72696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.244 5.244 3 C -0.043 4.043 4 C -0.031 4.031 5 C 0.008 3.992 6 C 0.158 3.842 7 H 0.080 0.920 8 C -0.549 4.549 9 H 0.074 0.926 10 C 0.051 3.949 11 N -0.925 5.925 12 Si 0.935 3.065 13 H -0.265 1.265 14 H -0.366 1.366 15 H -0.218 1.218 16 O -0.343 6.343 17 C 0.186 3.814 18 F -0.176 7.176 19 C -0.136 4.136 20 C -0.169 4.169 21 H 0.127 0.873 22 C -0.048 4.048 23 Br -0.188 7.188 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.257 0.743 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.902 19.759 1.900 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 N 0.097 4.903 3 C -0.183 4.183 4 C -0.172 4.172 5 C -0.115 4.115 6 C 0.102 3.898 7 H 0.098 0.902 8 C -0.586 4.586 9 H 0.091 0.909 10 C -0.151 4.151 11 N -0.562 5.562 12 Si 0.771 3.229 13 H -0.191 1.191 14 H -0.301 1.301 15 H -0.143 1.143 16 O -0.265 6.265 17 C 0.128 3.872 18 F -0.156 7.156 19 C -0.175 4.175 20 C -0.188 4.188 21 H 0.145 0.855 22 C -0.163 4.163 23 Br -0.108 7.108 24 H 0.159 0.841 25 H 0.159 0.841 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.166 0.834 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.188 19.368 1.623 24.064 hybrid contribution 1.007 -1.165 0.513 1.623 sum -13.181 18.203 2.137 22.576 Atomic orbital electron populations 1.24345 0.75533 1.08691 1.10741 1.45581 1.15736 1.15170 1.13815 1.24287 1.05338 0.78206 1.10490 1.24349 1.05190 1.01276 0.86392 1.23877 1.04453 0.94808 0.88353 1.20483 0.98861 0.89748 0.80709 0.90234 1.21570 1.00437 1.38824 0.97763 0.90851 1.25505 0.96437 0.93226 0.99981 1.70033 1.08837 1.40720 1.36598 0.85874 0.71520 0.82569 0.82967 1.19067 1.30140 1.14316 1.87977 1.55979 1.45856 1.36648 1.21414 0.97249 0.87727 0.80786 1.92962 1.92973 1.74472 1.55232 1.24473 0.93668 1.02293 0.97017 1.23413 1.04107 0.93259 0.98033 0.85482 1.24406 0.96033 0.92782 1.03101 1.97538 1.56267 1.78688 1.78342 0.84113 0.84090 0.88003 0.87470 0.84116 0.84509 0.87485 0.85112 0.88674 0.83444 0.87574 0.93396 0.83448 0.85176 0.84947 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.52 7.78 127.69 0.99 2.51 16 2 N -0.24 5.73 0.05 ******* -0.07 5.66 16 3 C -0.04 1.29 7.98 127.69 1.02 2.31 16 4 C -0.03 0.48 6.66 127.69 0.85 1.33 16 5 C 0.01 -0.11 3.43 86.30 0.30 0.19 16 6 C 0.16 -0.16 1.57 29.85 0.05 -0.12 16 7 H 0.08 -0.47 5.35 -2.38 -0.01 -0.49 16 8 C -0.55 -7.17 6.19 25.60 0.16 -7.01 16 9 H 0.07 1.24 6.18 -2.91 -0.02 1.22 16 10 C 0.05 1.20 5.47 84.65 0.46 1.66 16 11 N -0.92 -30.19 13.96 21.45 0.30 -29.89 16 12 Si 0.93 18.96 24.36 68.60 1.67 20.63 16 13 H -0.27 -5.80 6.84 99.48 0.68 -5.12 16 14 H -0.37 -10.49 7.11 99.48 0.71 -9.79 16 15 H -0.22 -2.39 5.79 99.48 0.58 -1.81 16 16 O -0.34 -1.44 5.00 -148.98 -0.75 -2.18 16 17 C 0.19 0.72 3.28 30.59 0.10 0.82 16 18 F -0.18 -1.95 15.33 44.97 0.69 -1.26 16 19 C -0.14 0.87 10.11 30.60 0.31 1.18 16 20 C -0.17 -0.25 5.77 -10.79 -0.06 -0.31 16 21 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 22 C -0.05 -0.11 6.56 71.98 0.47 0.36 16 23 Br -0.19 -2.68 32.92 -20.37 -0.67 -3.35 16 24 H 0.14 -4.74 8.13 -2.39 -0.02 -4.75 16 25 H 0.14 -4.68 8.14 -2.38 -0.02 -4.70 16 26 H 0.10 -2.45 5.92 -2.39 -0.01 -2.46 16 27 H 0.11 -2.85 8.11 -2.39 -0.02 -2.87 16 28 H 0.14 -4.81 8.05 -2.39 -0.02 -4.83 16 29 H 0.14 -4.65 8.14 -2.38 -0.02 -4.66 16 30 H 0.11 -0.99 5.17 -2.39 -0.01 -1.01 16 31 H 0.13 -3.02 7.95 -2.39 -0.02 -3.04 16 32 H 0.09 -0.63 7.20 -2.39 -0.02 -0.65 16 33 H 0.15 -3.09 8.09 -2.39 -0.02 -3.11 16 34 H 0.11 -0.90 7.12 -2.39 -0.02 -0.91 16 35 H 0.26 8.86 8.31 -92.70 -0.77 8.09 16 36 H 0.15 -1.78 8.14 -2.39 -0.02 -1.80 16 37 H 0.13 -1.24 8.08 -2.39 -0.02 -1.26 16 38 H 0.13 -0.32 8.14 -2.38 -0.02 -0.34 16 39 H 0.12 -0.11 7.94 -2.38 -0.02 -0.13 16 Total: 0.00 -58.35 318.46 6.69 -51.66 By element: Atomic # 1 Polarization: -45.07 SS G_CDS: 0.87 Total: -44.20 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.65 Total: 2.93 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.23 Total: -24.22 kcal Atomic # 8 Polarization: -1.44 SS G_CDS: -0.75 Total: -2.18 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.69 Total: -1.26 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: 1.67 Total: 20.63 kcal Atomic # 35 Polarization: -2.68 SS G_CDS: -0.67 Total: -3.35 kcal Total: -58.35 6.69 -51.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224457587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.850 kcal (2) G-P(sol) polarization free energy of solvation -58.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds