Wall clock time and date at job start Tue Mar 31 2020 13:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 109.47120 * 2 1 4 4 C 1.46905 * 109.47094 * 240.00199 * 2 1 3 5 5 C 1.46902 * 109.47560 * 120.00177 * 2 1 3 6 6 C 1.53006 * 109.46920 * 64.33260 * 5 2 1 7 7 H 1.08995 * 109.47128 * 53.27623 * 6 5 2 8 8 C 1.50700 * 109.47012 * 173.27800 * 6 5 2 9 9 H 1.07996 * 119.99751 * 240.00320 * 8 6 5 10 10 C 1.37881 * 119.99734 * 59.99849 * 8 6 5 11 11 N 1.31509 * 120.00285 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99706 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47298 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47456 * 120.00042 * 12 10 8 15 15 H 1.48497 * 109.47193 * 240.00157 * 12 10 8 16 16 O 1.42895 * 109.46905 * 293.27562 * 6 5 2 17 17 C 1.42900 * 113.99708 * 150.00028 * 16 6 5 18 18 F 1.39904 * 115.55328 * 330.67107 * 17 16 6 19 19 C 1.53006 * 117.51919 * 116.37079 * 17 16 6 20 20 C 1.53002 * 60.00188 * 107.48098 * 19 17 16 21 21 H 1.08996 * 117.51937 * 252.52273 * 20 19 17 22 22 C 1.53002 * 117.49707 * 107.48741 * 20 19 17 23 23 Br 1.96595 * 109.46778 * 116.38220 * 22 20 19 24 24 H 1.09007 * 109.46811 * 290.61808 * 1 2 3 25 25 H 1.08999 * 109.47357 * 50.61959 * 1 2 3 26 26 H 1.08997 * 109.47219 * 170.62063 * 1 2 3 27 27 H 1.09002 * 109.46841 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47293 * 300.00080 * 3 2 1 29 29 H 1.08994 * 109.47055 * 60.00504 * 3 2 1 30 30 H 1.09003 * 109.46717 * 299.99816 * 4 2 1 31 31 H 1.08999 * 109.46867 * 59.99586 * 4 2 1 32 32 H 1.09002 * 109.47403 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46611 * 304.33480 * 5 2 1 34 34 H 1.09000 * 109.47217 * 184.33399 * 5 2 1 35 35 H 0.97005 * 120.00024 * 180.02562 * 11 10 8 36 36 H 1.08998 * 117.49725 * 359.97438 * 19 17 16 37 37 H 1.08998 * 117.50083 * 214.97357 * 19 17 16 38 38 H 1.08998 * 109.47240 * 356.38446 * 22 20 19 39 39 H 1.09000 * 109.47438 * 236.38264 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5396 -2.1631 1.1460 7 1 1.8633 -2.5990 0.2009 8 6 2.1790 -2.9094 2.2886 9 1 2.8430 -3.7373 2.0884 10 6 1.9163 -2.5351 3.5893 11 7 1.1074 -1.5272 3.8330 12 14 2.7094 -3.4597 5.0055 13 1 3.5712 -4.5432 4.4684 14 1 3.5358 -2.5223 5.8076 15 1 1.6521 -4.0482 5.8662 16 8 0.1177 -2.2573 1.2520 17 6 -0.4422 -3.3837 0.5740 18 9 0.2673 -3.8270 -0.5474 19 6 -1.1512 -4.4399 1.4242 20 6 -1.9675 -3.4988 0.5358 21 1 -2.5437 -2.7154 1.0279 22 6 -2.6000 -4.0898 -0.7257 23 35 -4.5582 -3.9804 -0.5899 24 1 -0.3633 0.3619 0.9619 25 1 -0.3634 0.6520 -0.7943 26 1 -0.3633 -1.0139 -0.1675 27 1 3.0486 1.3850 -0.0005 28 1 1.5953 1.8989 -0.8899 29 1 1.5954 1.8988 0.8900 30 1 1.5953 -1.7202 -1.1995 31 1 1.5952 -0.1786 -2.0894 32 1 3.0486 -0.6929 -1.1993 33 1 1.5333 -0.2255 2.0877 34 1 3.0459 -0.6257 1.2390 35 1 0.9229 -1.2636 4.7481 36 1 -1.1903 -4.2758 2.5010 37 1 -1.0648 -5.4800 1.1099 38 1 -2.3006 -5.1329 -0.8279 39 1 -2.2643 -3.5285 -1.5977 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224457588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:56 Heat of formation + Delta-G solvation = 41.118240 kcal Electronic energy + Delta-G solvation = -21947.163487 eV Core-core repulsion = 18584.449584 eV Total energy + Delta-G solvation = -3362.713904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.80910 -43.26051 -38.89468 -36.98386 -34.31723 -32.15658 -31.29746 -30.37815 -30.22166 -27.83210 -27.67729 -24.99173 -23.32296 -22.37930 -21.70041 -19.23942 -18.94389 -18.54718 -18.20439 -17.53768 -16.76650 -16.37995 -16.01097 -15.56045 -15.07952 -15.01120 -14.83505 -14.50103 -14.44838 -14.19551 -14.10064 -13.96907 -13.79394 -13.67193 -13.44238 -13.31872 -12.91007 -12.59902 -12.53885 -12.20707 -11.74633 -11.57165 -11.27376 -11.10342 -10.81747 -10.78351 -10.19643 -9.74248 -7.77586 -5.97381 0.31901 0.59457 2.04299 2.12887 2.24874 2.26773 2.33833 2.36049 2.38402 2.80323 3.00148 3.06794 3.14597 3.20658 3.41543 3.50638 3.58884 3.63689 3.67683 3.69168 3.74985 3.77873 3.83445 4.05653 4.13378 4.18137 4.20380 4.25602 4.40924 4.49780 4.81011 5.00400 5.14348 5.20744 6.16008 6.23218 6.44480 7.18927 7.86618 9.25579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.272 5.272 3 C -0.040 4.040 4 C -0.048 4.048 5 C -0.002 4.002 6 C 0.187 3.813 7 H 0.050 0.950 8 C -0.561 4.561 9 H 0.076 0.924 10 C 0.092 3.908 11 N -0.864 5.864 12 Si 0.900 3.100 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.274 1.274 16 O -0.328 6.328 17 C 0.215 3.785 18 F -0.185 7.185 19 C -0.170 4.170 20 C -0.153 4.153 21 H 0.133 0.867 22 C -0.050 4.050 23 Br -0.147 7.147 24 H 0.120 0.880 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.277 0.723 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.276 9.568 -11.983 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.069 4.931 3 C -0.182 4.182 4 C -0.190 4.190 5 C -0.121 4.121 6 C 0.132 3.868 7 H 0.068 0.932 8 C -0.598 4.598 9 H 0.094 0.906 10 C -0.117 4.117 11 N -0.498 5.498 12 Si 0.726 3.274 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.199 1.199 16 O -0.249 6.249 17 C 0.156 3.844 18 F -0.165 7.165 19 C -0.207 4.207 20 C -0.172 4.172 21 H 0.151 0.849 22 C -0.166 4.166 23 Br -0.066 7.066 24 H 0.139 0.861 25 H 0.117 0.883 26 H 0.147 0.853 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.175 0.825 34 H 0.138 0.862 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.448 9.848 -11.727 15.320 hybrid contribution 0.986 -0.659 0.718 1.386 sum 1.434 9.188 -11.009 14.412 Atomic orbital electron populations 1.24279 0.76492 1.09492 1.07822 1.46392 1.15579 1.14448 1.16638 1.23999 1.04915 0.81226 1.08088 1.24086 1.05017 1.02692 0.87196 1.24920 1.03298 0.97533 0.86305 1.20128 0.78991 0.89111 0.98540 0.93195 1.21261 1.30784 1.17905 0.89824 0.90621 1.25010 0.92937 0.94250 0.99547 1.69629 1.32206 1.25664 1.22284 0.86346 0.79763 0.80251 0.81059 1.19087 1.20094 1.19927 1.88359 1.24489 1.41045 1.71037 1.21141 0.87486 0.92186 0.83563 1.92837 1.80470 1.89770 1.53467 1.24143 0.99501 0.96420 1.00678 1.23536 0.91796 1.03530 0.98354 0.84903 1.24233 0.87150 1.05518 0.99685 1.97461 1.10764 1.99285 1.99101 0.86119 0.88348 0.85335 0.86869 0.87266 0.86525 0.86155 0.87230 0.86657 0.82487 0.86204 0.91291 0.85912 0.87512 0.87625 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.34 7.16 60.06 0.43 0.77 16 2 N -0.27 2.57 0.05 -395.62 -0.02 2.55 16 3 C -0.04 0.49 8.00 60.07 0.48 0.97 16 4 C -0.05 0.50 7.54 60.07 0.45 0.96 16 5 C 0.00 0.01 3.52 -3.82 -0.01 0.00 16 6 C 0.19 0.18 1.82 -27.88 -0.05 0.13 16 7 H 0.05 -0.02 4.37 -51.93 -0.23 -0.25 16 8 C -0.56 -3.79 8.89 -34.44 -0.31 -4.10 16 9 H 0.08 0.64 7.81 -52.49 -0.41 0.23 16 10 C 0.09 0.77 5.24 -17.82 -0.09 0.67 16 11 N -0.86 -6.96 10.95 55.43 0.61 -6.36 16 12 Si 0.90 7.84 29.54 -169.99 -5.02 2.81 16 13 H -0.27 -2.51 7.11 56.52 0.40 -2.11 16 14 H -0.28 -2.56 7.11 56.52 0.40 -2.16 16 15 H -0.27 -2.75 7.11 56.52 0.40 -2.35 16 16 O -0.33 -0.43 6.71 -35.23 -0.24 -0.67 16 17 C 0.22 0.18 3.36 -26.72 -0.09 0.09 16 18 F -0.18 -0.12 15.20 2.25 0.03 -0.09 16 19 C -0.17 -0.30 10.11 -26.73 -0.27 -0.57 16 20 C -0.15 0.07 5.74 -90.61 -0.52 -0.45 16 21 H 0.13 -0.03 8.07 -51.93 -0.42 -0.45 16 22 C -0.05 0.08 6.53 37.16 0.24 0.32 16 23 Br -0.15 -0.08 33.89 -68.01 -2.30 -2.39 16 24 H 0.12 -0.86 7.94 -51.93 -0.41 -1.27 16 25 H 0.10 -1.14 8.00 -51.93 -0.42 -1.55 16 26 H 0.13 -0.82 5.04 -51.93 -0.26 -1.08 16 27 H 0.11 -1.44 8.12 -51.93 -0.42 -1.86 16 28 H 0.11 -1.53 8.07 -51.93 -0.42 -1.95 16 29 H 0.12 -1.35 8.14 -51.93 -0.42 -1.78 16 30 H 0.12 -0.97 5.51 -51.93 -0.29 -1.26 16 31 H 0.11 -1.41 8.14 -51.93 -0.42 -1.84 16 32 H 0.11 -1.31 8.14 -51.93 -0.42 -1.74 16 33 H 0.16 -0.13 6.12 -51.93 -0.32 -0.45 16 34 H 0.12 -0.53 8.09 -51.93 -0.42 -0.95 16 35 H 0.28 2.43 8.31 -40.82 -0.34 2.09 16 36 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.10 8.03 -51.93 -0.42 -0.31 16 38 H 0.11 -0.17 7.88 -51.93 -0.41 -0.58 16 39 H 0.10 -0.32 8.14 -51.93 -0.42 -0.75 16 LS Contribution 327.65 15.07 4.94 4.94 Total: 0.00 -14.91 327.65 -7.83 -22.74 By element: Atomic # 1 Polarization: -16.25 SS G_CDS: -6.09 Total: -22.34 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 0.26 Total: -1.20 kcal Atomic # 7 Polarization: -4.39 SS G_CDS: 0.59 Total: -3.81 kcal Atomic # 8 Polarization: -0.43 SS G_CDS: -0.24 Total: -0.67 kcal Atomic # 9 Polarization: -0.12 SS G_CDS: 0.03 Total: -0.09 kcal Atomic # 14 Polarization: 7.84 SS G_CDS: -5.02 Total: 2.81 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.30 Total: -2.39 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -14.91 -7.83 -22.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224457588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.857 kcal (2) G-P(sol) polarization free energy of solvation -14.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds