Wall clock time and date at job start Tue Mar 31 2020 14:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00363 * 2 1 4 4 H 1.48501 * 109.47227 * 265.14108 * 3 2 1 5 5 H 1.48494 * 109.47183 * 25.14031 * 3 2 1 6 6 H 1.48502 * 109.47149 * 145.14575 * 3 2 1 7 7 C 1.37882 * 119.99346 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00155 * 353.02082 * 7 2 1 9 9 C 1.50697 * 119.99794 * 173.01511 * 7 2 1 10 10 H 1.09001 * 109.47304 * 24.82471 * 9 7 2 11 11 O 1.42901 * 109.47189 * 144.82807 * 9 7 2 12 12 C 1.35459 * 116.99605 * 270.00101 * 11 9 7 13 13 N 1.32330 * 119.19747 * 0.02562 * 12 11 9 14 14 C 1.32282 * 120.75467 * 179.97438 * 13 12 11 15 15 C 1.38618 * 119.17791 * 359.73165 * 14 13 12 16 16 C 1.38568 * 118.51796 * 0.51144 * 15 14 13 17 17 C 1.50700 * 120.40964 * 179.76004 * 16 15 14 18 18 F 1.39900 * 109.46689 * 184.72574 * 17 16 15 19 19 F 1.39903 * 109.47066 * 304.72152 * 17 16 15 20 20 F 1.39895 * 109.47232 * 64.72640 * 17 16 15 21 21 N 1.32305 * 119.19012 * 180.02562 * 12 11 9 22 22 C 1.50701 * 109.47315 * 264.82974 * 9 7 2 23 23 C 1.38241 * 119.99831 * 276.36312 * 22 9 7 24 24 C 1.38239 * 119.99847 * 179.81002 * 23 22 9 25 25 C 1.38232 * 119.99985 * 0.39671 * 24 23 22 26 26 C 1.38232 * 120.00064 * 359.85776 * 25 24 23 27 27 C 1.38235 * 120.00364 * 359.95292 * 26 25 24 28 28 H 0.97005 * 119.98971 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.40914 * 179.97438 * 14 13 12 30 30 H 1.07998 * 120.73818 * 180.29689 * 15 14 13 31 31 H 1.07996 * 119.99688 * 359.97438 * 23 22 9 32 32 H 1.07997 * 119.99576 * 180.23556 * 24 23 22 33 33 H 1.07999 * 119.99725 * 179.83534 * 25 24 23 34 34 H 1.07998 * 120.00193 * 179.97438 * 26 25 24 35 35 H 1.07991 * 120.00401 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5995 1.9870 -1.3950 5 1 1.3992 2.6800 0.5948 6 1 3.4918 1.4718 0.8001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4704 -2.1260 0.1127 9 6 3.5031 -1.1991 -0.1592 10 1 3.9069 -0.2432 0.1745 11 8 4.0619 -2.2531 0.6274 12 6 4.4041 -1.9531 1.9033 13 7 4.2084 -0.7237 2.3521 14 6 4.5308 -0.3971 3.5927 15 6 5.0742 -1.3624 4.4261 16 6 5.2701 -2.6379 3.9214 17 6 5.8630 -3.7186 4.7884 18 9 6.0581 -4.8744 4.0247 19 9 7.0908 -3.2849 5.2999 20 9 4.9905 -3.9997 5.8452 21 7 4.9260 -2.8964 2.6702 22 6 3.8540 -1.4139 -1.6090 23 6 3.9010 -2.6950 -2.1263 24 6 4.2190 -2.8918 -3.4571 25 6 4.4982 -1.8082 -4.2686 26 6 4.4564 -0.5275 -3.7500 27 6 4.1345 -0.3303 -2.4202 28 1 -0.4849 0.8402 0.0004 29 1 4.3690 0.6081 3.9531 30 1 5.3421 -1.1246 5.4449 31 1 3.6865 -3.5419 -1.4913 32 1 4.2520 -3.8925 -3.8621 33 1 4.7493 -1.9621 -5.3076 34 1 4.6749 0.3192 -4.3839 35 1 4.1023 0.6702 -2.0150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225708168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:26 Heat of formation + Delta-G solvation = -93.575200 kcal Electronic energy + Delta-G solvation = -26878.446625 eV Core-core repulsion = 22428.061729 eV Total energy + Delta-G solvation = -4450.384896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.24947 -47.80529 -47.66292 -41.08240 -38.93512 -37.47798 -34.05035 -33.28028 -31.89049 -30.91920 -30.30828 -27.62010 -27.18418 -24.18374 -23.57414 -22.62033 -22.00247 -20.51780 -18.90497 -18.77521 -18.64944 -17.58546 -17.33367 -16.85442 -16.18746 -15.60355 -15.47542 -14.84542 -14.65839 -14.60139 -14.38799 -14.28208 -14.15998 -13.84961 -13.83432 -13.82481 -13.29726 -12.98756 -12.85684 -12.76466 -12.54241 -12.10237 -11.84171 -11.23673 -11.08942 -10.99389 -10.93279 -10.47531 -10.27048 -9.86290 -9.76753 -9.10639 -8.87424 -8.69920 -8.34940 -8.00962 -6.38904 -4.44021 0.71300 1.11754 1.92181 1.98261 2.20350 3.02900 3.10961 3.20062 3.26294 3.50943 3.71315 3.97973 4.17399 4.24098 4.29832 4.41704 4.73544 4.92484 4.96194 5.04555 5.42380 5.44153 5.49312 5.60507 5.77973 5.98349 6.10543 6.19607 6.35094 6.54294 6.61744 6.75430 7.00223 7.04791 7.15844 7.26426 7.57767 7.65327 8.09585 8.28226 8.68938 9.19192 10.71671 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.004406 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.703189 B = 6352.956198 C = 7555.519792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.092 3.908 3 Si 0.856 3.144 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.238 1.238 7 C -0.525 4.525 8 H 0.084 0.916 9 C 0.211 3.789 10 H 0.073 0.927 11 O -0.280 6.280 12 C 0.537 3.463 13 N -0.524 5.524 14 C 0.197 3.803 15 C -0.242 4.242 16 C 0.122 3.878 17 C 0.526 3.474 18 F -0.158 7.158 19 F -0.169 7.169 20 F -0.168 7.168 21 N -0.501 5.501 22 C -0.043 4.043 23 C -0.101 4.101 24 C -0.123 4.123 25 C -0.141 4.141 26 C -0.120 4.120 27 C -0.125 4.125 28 H 0.271 0.729 29 H 0.179 0.821 30 H 0.155 0.845 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 -0.759 5.820 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.162 1.162 7 C -0.561 4.561 8 H 0.102 0.898 9 C 0.157 3.843 10 H 0.091 0.909 11 O -0.180 6.180 12 C 0.237 3.763 13 N -0.252 5.252 14 C 0.029 3.971 15 C -0.266 4.266 16 C -0.028 4.028 17 C 0.471 3.529 18 F -0.139 7.139 19 F -0.151 7.151 20 F -0.149 7.149 21 N -0.228 5.228 22 C -0.044 4.044 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.159 4.159 26 C -0.139 4.139 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.196 0.804 30 H 0.173 0.827 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.387 -1.148 4.564 12.321 hybrid contribution 0.257 1.081 0.923 1.445 sum 11.644 -0.067 5.487 12.872 Atomic orbital electron populations 1.69886 1.06393 1.27802 1.46782 1.24915 0.94738 0.99009 0.92781 0.87151 0.81781 0.83318 0.79534 1.19413 1.20968 1.16206 1.21025 0.87805 0.95796 1.51481 0.89770 1.19747 0.94807 0.86563 0.83149 0.90903 1.86131 1.73307 1.42490 1.16045 1.20566 0.85160 0.83147 0.87409 1.68389 1.19960 1.19871 1.17003 1.23120 0.87195 0.99642 0.87189 1.22277 1.06791 0.93908 1.03662 1.20961 0.97421 0.92902 0.91493 1.17773 0.75933 0.80995 0.78229 1.93260 1.94881 1.50654 1.75117 1.93229 1.44446 1.89661 1.87738 1.93242 1.69342 1.94023 1.58286 1.67025 1.16083 1.35628 1.04042 1.20109 0.94569 0.93446 0.96251 1.20962 0.98947 0.97062 0.94925 1.21064 1.00576 0.98369 0.94057 1.20934 1.02926 0.92909 0.99179 1.20925 1.01072 0.96845 0.95015 1.20889 1.00952 0.98273 0.94225 0.91915 0.80400 0.82713 0.85915 0.86710 0.86915 0.86734 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.28 13.96 55.43 0.77 -24.51 16 2 C 0.09 2.50 5.47 -17.82 -0.10 2.41 16 3 Si 0.86 19.60 25.61 -169.99 -4.35 15.25 16 4 H -0.27 -5.94 6.43 56.52 0.36 -5.58 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.09 6.36 56.52 0.36 -4.73 16 7 C -0.52 -14.22 9.17 -34.44 -0.32 -14.53 16 8 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.21 4.97 1.81 -29.04 -0.05 4.91 16 10 H 0.07 1.70 3.68 -51.93 -0.19 1.51 16 11 O -0.28 -6.45 9.02 -18.07 -0.16 -6.61 16 12 C 0.54 11.25 8.45 -91.25 -0.77 10.48 16 13 N -0.52 -10.16 8.66 -14.73 -0.13 -10.29 16 14 C 0.20 2.79 11.30 -17.22 -0.19 2.60 16 15 C -0.24 -3.04 9.74 -39.32 -0.38 -3.43 16 16 C 0.12 1.87 6.29 -82.26 -0.52 1.36 16 17 C 0.53 7.01 3.34 36.01 0.12 7.13 16 18 F -0.16 -2.34 16.90 2.25 0.04 -2.30 16 19 F -0.17 -2.00 17.18 2.25 0.04 -1.96 16 20 F -0.17 -2.12 17.29 2.25 0.04 -2.08 16 21 N -0.50 -9.57 9.90 -10.95 -0.11 -9.68 16 22 C -0.04 -0.94 4.98 -104.62 -0.52 -1.46 16 23 C -0.10 -2.03 9.35 -39.58 -0.37 -2.40 16 24 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 25 C -0.14 -2.27 10.05 -39.59 -0.40 -2.66 16 26 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 27 C -0.13 -2.51 9.35 -39.58 -0.37 -2.88 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 2.47 7.67 -52.49 -0.40 2.07 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.11 2.23 5.78 -52.49 -0.30 1.93 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -30.56 321.59 -6.33 -36.89 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.65 Total: 3.86 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -4.67 Total: -3.41 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.54 Total: -44.48 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.16 Total: -6.61 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.12 Total: -6.35 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.35 Total: 15.25 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.56 -6.33 -36.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225708168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.684 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds