Wall clock time and date at job start Tue Mar 31 2020 14:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00363 * 2 1 4 4 H 1.48501 * 109.47227 * 265.14108 * 3 2 1 5 5 H 1.48494 * 109.47183 * 25.14031 * 3 2 1 6 6 H 1.48502 * 109.47149 * 145.14575 * 3 2 1 7 7 C 1.37882 * 119.99346 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00155 * 353.02082 * 7 2 1 9 9 C 1.50697 * 119.99794 * 173.01511 * 7 2 1 10 10 H 1.09001 * 109.47304 * 24.82471 * 9 7 2 11 11 O 1.42901 * 109.47189 * 144.82807 * 9 7 2 12 12 C 1.35459 * 116.99605 * 270.00101 * 11 9 7 13 13 N 1.32330 * 119.19747 * 0.02562 * 12 11 9 14 14 C 1.32282 * 120.75467 * 179.97438 * 13 12 11 15 15 C 1.38618 * 119.17791 * 359.73165 * 14 13 12 16 16 C 1.38568 * 118.51796 * 0.51144 * 15 14 13 17 17 C 1.50700 * 120.40964 * 179.76004 * 16 15 14 18 18 F 1.39900 * 109.46689 * 184.72574 * 17 16 15 19 19 F 1.39903 * 109.47066 * 304.72152 * 17 16 15 20 20 F 1.39895 * 109.47232 * 64.72640 * 17 16 15 21 21 N 1.32305 * 119.19012 * 180.02562 * 12 11 9 22 22 C 1.50701 * 109.47315 * 264.82974 * 9 7 2 23 23 C 1.38241 * 119.99831 * 276.36312 * 22 9 7 24 24 C 1.38239 * 119.99847 * 179.81002 * 23 22 9 25 25 C 1.38232 * 119.99985 * 0.39671 * 24 23 22 26 26 C 1.38232 * 120.00064 * 359.85776 * 25 24 23 27 27 C 1.38235 * 120.00364 * 359.95292 * 26 25 24 28 28 H 0.97005 * 119.98971 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.40914 * 179.97438 * 14 13 12 30 30 H 1.07998 * 120.73818 * 180.29689 * 15 14 13 31 31 H 1.07996 * 119.99688 * 359.97438 * 23 22 9 32 32 H 1.07997 * 119.99576 * 180.23556 * 24 23 22 33 33 H 1.07999 * 119.99725 * 179.83534 * 25 24 23 34 34 H 1.07998 * 120.00193 * 179.97438 * 26 25 24 35 35 H 1.07991 * 120.00401 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5995 1.9870 -1.3950 5 1 1.3992 2.6800 0.5948 6 1 3.4918 1.4718 0.8001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4704 -2.1260 0.1127 9 6 3.5031 -1.1991 -0.1592 10 1 3.9069 -0.2432 0.1745 11 8 4.0619 -2.2531 0.6274 12 6 4.4041 -1.9531 1.9033 13 7 4.2084 -0.7237 2.3521 14 6 4.5308 -0.3971 3.5927 15 6 5.0742 -1.3624 4.4261 16 6 5.2701 -2.6379 3.9214 17 6 5.8630 -3.7186 4.7884 18 9 6.0581 -4.8744 4.0247 19 9 7.0908 -3.2849 5.2999 20 9 4.9905 -3.9997 5.8452 21 7 4.9260 -2.8964 2.6702 22 6 3.8540 -1.4139 -1.6090 23 6 3.9010 -2.6950 -2.1263 24 6 4.2190 -2.8918 -3.4571 25 6 4.4982 -1.8082 -4.2686 26 6 4.4564 -0.5275 -3.7500 27 6 4.1345 -0.3303 -2.4202 28 1 -0.4849 0.8402 0.0004 29 1 4.3690 0.6081 3.9531 30 1 5.3421 -1.1246 5.4449 31 1 3.6865 -3.5419 -1.4913 32 1 4.2520 -3.8925 -3.8621 33 1 4.7493 -1.9621 -5.3076 34 1 4.6749 0.3192 -4.3839 35 1 4.1023 0.6702 -2.0150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225708168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:26 Heat of formation + Delta-G solvation = -114.688733 kcal Electronic energy + Delta-G solvation = -26879.362176 eV Core-core repulsion = 22428.061729 eV Total energy + Delta-G solvation = -4451.300447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.32014 -48.83209 -48.77800 -42.42601 -40.42894 -38.97974 -35.37216 -35.14970 -33.43218 -32.35874 -31.71897 -29.27109 -28.47308 -25.70281 -24.96056 -24.03351 -23.41058 -22.00921 -20.22201 -19.98483 -19.71093 -19.40874 -18.72034 -18.29544 -17.58810 -17.04099 -16.70775 -16.39405 -16.09565 -15.73950 -15.67114 -15.54239 -15.21035 -15.14052 -14.92016 -14.91344 -14.83772 -14.68506 -14.53086 -14.24850 -13.76968 -13.55918 -13.43840 -12.90326 -12.63936 -12.35080 -12.28129 -12.02074 -11.92903 -11.61503 -11.46957 -10.88636 -10.45387 -10.12636 -9.77072 -9.52961 -8.45410 -6.56691 -0.51384 -0.12783 0.49098 0.55508 1.00778 1.28722 1.34172 1.47835 1.71540 2.26198 2.36610 2.42402 2.80068 2.85077 3.01718 3.05910 3.20109 3.58330 3.72062 3.99659 4.04228 4.16997 4.25363 4.31393 4.33227 4.53032 4.74866 4.77549 4.93478 5.08954 5.20106 5.24561 5.42014 5.60727 5.64225 5.78584 5.96073 6.17102 6.29364 6.48227 6.85878 7.12870 8.69932 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.004406 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.703189 B = 6352.956198 C = 7555.519792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.041 3.959 3 Si 0.918 3.082 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.217 1.217 7 C -0.531 4.531 8 H 0.026 0.974 9 C 0.227 3.773 10 H 0.075 0.925 11 O -0.305 6.305 12 C 0.507 3.493 13 N -0.556 5.556 14 C 0.194 3.806 15 C -0.207 4.207 16 C 0.100 3.900 17 C 0.537 3.463 18 F -0.170 7.170 19 F -0.156 7.156 20 F -0.161 7.161 21 N -0.528 5.528 22 C -0.078 4.078 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.117 4.117 27 C -0.143 4.143 28 H 0.273 0.727 29 H 0.226 0.774 30 H 0.208 0.792 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.401 1.126 5.819 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.160 4.160 3 Si 0.739 3.261 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.139 1.139 7 C -0.568 4.568 8 H 0.044 0.956 9 C 0.172 3.828 10 H 0.093 0.907 11 O -0.205 6.205 12 C 0.206 3.794 13 N -0.285 5.285 14 C 0.027 3.973 15 C -0.230 4.230 16 C -0.048 4.048 17 C 0.481 3.519 18 F -0.151 7.151 19 F -0.137 7.137 20 F -0.142 7.142 21 N -0.256 5.256 22 C -0.079 4.079 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.135 4.135 27 C -0.161 4.161 28 H 0.082 0.918 29 H 0.243 0.757 30 H 0.225 0.775 31 H 0.122 0.878 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.970 0.715 4.609 14.728 hybrid contribution -0.453 0.362 1.032 1.184 sum 13.517 1.077 5.641 14.686 Atomic orbital electron populations 1.70035 1.08376 1.28868 1.49298 1.25762 0.95399 1.02829 0.92051 0.86208 0.81074 0.78058 0.80741 1.17756 1.20648 1.13929 1.21038 0.90132 0.93714 1.51870 0.95564 1.19440 0.92065 0.86809 0.84449 0.90708 1.86022 1.74255 1.42528 1.17742 1.20627 0.87266 0.84435 0.87056 1.68330 1.21091 1.19304 1.19733 1.24035 0.85810 1.01945 0.85555 1.22853 1.02944 0.91851 1.05316 1.21481 0.97778 0.94857 0.90641 1.17496 0.76283 0.80128 0.77965 1.93238 1.94970 1.51310 1.75608 1.93259 1.43539 1.89436 1.87442 1.93259 1.69262 1.93918 1.57786 1.66914 1.16967 1.35945 1.05747 1.20170 0.97237 0.94934 0.95544 1.21000 1.00596 0.96138 0.96588 1.21430 0.99119 1.00634 0.92638 1.21459 1.00380 0.91875 1.00948 1.21388 0.99316 0.98764 0.94017 1.21069 1.01855 0.97597 0.95622 0.91774 0.75738 0.77533 0.87835 0.83692 0.82465 0.83032 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.96 21.45 0.30 -56.25 16 2 C 0.04 2.31 5.47 84.65 0.46 2.77 16 3 Si 0.92 40.85 25.61 68.60 1.76 42.61 16 4 H -0.25 -10.54 6.43 99.48 0.64 -9.90 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.22 -8.76 6.36 99.48 0.63 -8.13 16 7 C -0.53 -30.80 9.17 25.60 0.23 -30.56 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 9 C 0.23 11.19 1.81 29.10 0.05 11.25 16 10 H 0.08 3.56 3.68 -2.39 -0.01 3.55 16 11 O -0.30 -15.00 9.02 -87.57 -0.79 -15.79 16 12 C 0.51 22.05 8.45 180.57 1.53 23.58 16 13 N -0.56 -21.44 8.66 -313.46 -2.72 -24.16 16 14 C 0.19 4.96 11.30 84.72 0.96 5.92 16 15 C -0.21 -4.51 9.74 22.44 0.22 -4.29 16 16 C 0.10 2.95 6.29 42.56 0.27 3.22 16 17 C 0.54 13.49 3.34 71.24 0.24 13.73 16 18 F -0.17 -5.02 16.90 44.97 0.76 -4.26 16 19 F -0.16 -3.28 17.18 44.97 0.77 -2.50 16 20 F -0.16 -3.76 17.29 44.97 0.78 -2.99 16 21 N -0.53 -20.71 9.90 -301.51 -2.99 -23.69 16 22 C -0.08 -3.52 4.98 -19.86 -0.10 -3.62 16 23 C -0.12 -5.21 9.35 22.27 0.21 -5.01 16 24 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 25 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 26 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 27 C -0.14 -5.62 9.35 22.27 0.21 -5.41 16 28 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 29 H 0.23 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.10 4.56 7.67 -2.91 -0.02 4.54 16 32 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.11 4.32 5.78 -2.92 -0.02 4.31 16 Total: -1.00 -74.64 321.59 3.84 -70.80 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.02 Total: 15.23 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 4.95 Total: 1.00 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -5.40 Total: -104.10 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.79 Total: -15.79 kcal Atomic # 9 Polarization: -12.06 SS G_CDS: 2.31 Total: -9.75 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.76 Total: 42.61 kcal Total: -74.64 3.84 -70.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225708168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.886 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds