Wall clock time and date at job start Tue Mar 31 2020 14:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48501 * 109.47341 * 239.99987 * 3 2 1 5 5 H 1.48506 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47455 * 119.99284 * 3 2 1 7 7 C 1.37878 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00406 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99734 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47133 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.46959 * 59.99989 * 9 7 2 12 12 C 1.35455 * 117.00266 * 90.00026 * 11 9 7 13 13 N 1.32336 * 119.19313 * 0.02562 * 12 11 9 14 14 C 1.32280 * 120.75908 * 180.02562 * 13 12 11 15 15 C 1.38618 * 119.17721 * 359.97438 * 14 13 12 16 16 C 1.38572 * 118.51750 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.41523 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.47540 * 185.02298 * 17 16 15 19 19 F 1.39901 * 109.46840 * 305.02690 * 17 16 15 20 20 F 1.39902 * 109.46921 * 65.02211 * 17 16 15 21 21 N 1.32308 * 119.19800 * 179.97438 * 12 11 9 22 22 C 1.50698 * 109.47130 * 300.00068 * 9 7 2 23 23 C 1.38237 * 120.00132 * 84.72551 * 22 9 7 24 24 C 1.38233 * 119.99904 * 179.78833 * 23 22 9 25 25 C 1.38239 * 120.00012 * 0.44188 * 24 23 22 26 26 C 1.38232 * 120.00217 * 359.80970 * 25 24 23 27 27 C 1.38233 * 119.99749 * 359.97438 * 26 25 24 28 28 H 0.97003 * 120.00435 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.41556 * 180.02562 * 14 13 12 30 30 H 1.07992 * 120.74272 * 180.02562 * 15 14 13 31 31 H 1.07998 * 119.99996 * 0.02562 * 23 22 9 32 32 H 1.08002 * 120.00121 * 180.27619 * 24 23 22 33 33 H 1.08002 * 119.99941 * 179.83425 * 25 24 23 34 34 H 1.07998 * 120.00242 * 179.97438 * 26 25 24 35 35 H 1.08005 * 120.00141 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 1.9595 -3.3276 0.0005 11 8 0.4301 -2.5751 -1.1665 12 6 0.9821 -3.1305 -2.2718 13 7 2.2299 -3.5681 -2.2197 14 6 2.7998 -4.1152 -3.2807 15 6 2.0730 -4.2274 -4.4558 16 6 0.7691 -3.7587 -4.4745 17 6 -0.0596 -3.8587 -5.7292 18 9 -1.2877 -3.2192 -5.5292 19 9 0.6195 -3.2441 -6.7867 20 9 -0.2798 -5.2057 -6.0365 21 7 0.2603 -3.2232 -3.3768 22 6 0.3843 -2.5787 1.2306 23 6 -0.8712 -2.0002 1.2301 24 6 -1.6681 -2.0770 2.3570 25 6 -1.2059 -2.7244 3.4876 26 6 0.0516 -3.2985 3.4899 27 6 0.8467 -3.2255 2.3615 28 1 -0.4851 0.8400 -0.0004 29 1 3.8184 -4.4708 -3.2319 30 1 2.5132 -4.6702 -5.3369 31 1 -1.2310 -1.4915 0.3480 32 1 -2.6507 -1.6289 2.3551 33 1 -1.8274 -2.7821 4.3690 34 1 0.4129 -3.8039 4.3733 35 1 1.8294 -3.6737 2.3634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225708170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:29 Heat of formation + Delta-G solvation = -89.553095 kcal Electronic energy + Delta-G solvation = -27039.829018 eV Core-core repulsion = 22589.618534 eV Total energy + Delta-G solvation = -4450.210484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.13590 -47.69931 -47.54122 -40.84708 -38.53771 -37.06146 -33.85482 -33.33370 -31.47750 -30.48655 -29.73726 -27.35749 -26.94231 -23.98140 -23.52994 -22.49720 -21.49361 -20.35250 -18.90923 -18.62206 -18.54075 -17.25374 -17.16643 -16.21287 -15.77017 -15.44123 -15.23986 -14.82925 -14.50759 -14.46161 -14.21892 -14.05554 -13.99091 -13.73263 -13.70769 -13.55651 -13.18362 -12.88750 -12.43768 -12.40318 -11.80053 -11.70868 -11.62751 -11.06804 -10.87047 -10.81913 -10.75748 -10.57087 -10.19338 -9.66314 -9.57512 -8.94952 -8.87865 -8.36799 -7.88648 -7.62025 -6.18210 -4.53268 0.88800 1.31666 2.28813 2.39352 2.50714 3.14575 3.21650 3.23337 3.29491 3.67451 3.89844 4.14018 4.17666 4.42905 4.45047 4.86653 4.90400 4.98361 5.13885 5.25033 5.66823 5.73350 5.85761 5.93136 6.13323 6.29703 6.52166 6.58657 6.75608 6.94712 6.96309 7.19336 7.37967 7.47936 7.65064 7.78252 7.87972 8.03920 8.15319 8.44711 8.70008 9.22580 10.65123 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.004307 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.242089 B = 6500.031633 C = 7280.474951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.079 3.921 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.072 0.928 9 C 0.242 3.758 10 H 0.059 0.941 11 O -0.259 6.259 12 C 0.536 3.464 13 N -0.535 5.535 14 C 0.196 3.804 15 C -0.255 4.255 16 C 0.124 3.876 17 C 0.525 3.475 18 F -0.158 7.158 19 F -0.170 7.170 20 F -0.171 7.171 21 N -0.502 5.502 22 C -0.049 4.049 23 C -0.048 4.048 24 C -0.150 4.150 25 C -0.141 4.141 26 C -0.148 4.148 27 C -0.121 4.121 28 H 0.269 0.731 29 H 0.176 0.824 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -8.007 -6.241 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.129 4.129 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.189 3.811 10 H 0.077 0.923 11 O -0.156 6.156 12 C 0.237 3.763 13 N -0.265 5.265 14 C 0.026 3.974 15 C -0.280 4.280 16 C -0.027 4.027 17 C 0.469 3.531 18 F -0.139 7.139 19 F -0.151 7.151 20 F -0.152 7.152 21 N -0.230 5.230 22 C -0.050 4.050 23 C -0.067 4.067 24 C -0.169 4.169 25 C -0.159 4.159 26 C -0.166 4.166 27 C -0.140 4.140 28 H 0.080 0.920 29 H 0.193 0.807 30 H 0.168 0.832 31 H 0.181 0.819 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.124 -7.268 -5.200 9.007 hybrid contribution 0.908 0.738 -0.734 1.381 sum 2.032 -6.530 -5.934 9.055 Atomic orbital electron populations 1.69789 1.05964 1.27047 1.44848 1.25145 0.94956 0.99860 0.92935 0.86509 0.79730 0.82098 0.78932 1.19989 1.20786 1.19758 1.21310 0.93408 0.89575 1.52397 0.91036 1.19187 0.87106 0.97686 0.77153 0.92331 1.86494 1.43032 1.68855 1.17248 1.20901 0.83509 0.84598 0.87281 1.68344 1.11737 1.14672 1.31765 1.23040 0.99408 0.88557 0.86357 1.22177 0.95289 1.08094 1.02428 1.20954 0.92516 0.96636 0.92562 1.17842 0.78443 0.74091 0.82715 1.93263 1.44181 1.81533 1.94902 1.93224 1.79987 1.83007 1.58910 1.93224 1.94906 1.33358 1.93733 1.67120 1.38649 1.18946 0.98254 1.19771 0.94480 0.95770 0.94979 1.21906 0.92755 0.92385 0.99627 1.21154 0.99709 1.01451 0.94546 1.20874 0.96364 1.00822 0.97871 1.20717 0.95271 1.02941 0.97696 1.20741 0.99099 1.00621 0.93498 0.92030 0.80732 0.83171 0.81886 0.87743 0.88007 0.87678 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.96 8.50 55.43 0.47 -21.49 16 2 C 0.08 2.03 5.24 -17.82 -0.09 1.93 16 3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.53 -13.63 8.89 -34.44 -0.31 -13.94 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.24 5.82 2.34 -29.04 -0.07 5.75 16 10 H 0.06 1.35 6.86 -51.93 -0.36 0.99 16 11 O -0.26 -6.41 8.39 -18.06 -0.15 -6.56 16 12 C 0.54 11.80 8.45 -91.25 -0.77 11.03 16 13 N -0.54 -10.29 8.66 -14.73 -0.13 -10.41 16 14 C 0.20 2.75 11.30 -17.22 -0.19 2.55 16 15 C -0.26 -3.38 9.74 -39.32 -0.38 -3.76 16 16 C 0.12 2.05 6.29 -82.26 -0.52 1.53 16 17 C 0.52 7.62 3.34 36.01 0.12 7.74 16 18 F -0.16 -2.58 16.90 2.25 0.04 -2.54 16 19 F -0.17 -2.26 17.18 2.25 0.04 -2.22 16 20 F -0.17 -2.25 17.29 2.25 0.04 -2.21 16 21 N -0.50 -10.38 9.90 -10.95 -0.11 -10.48 16 22 C -0.05 -1.15 4.80 -104.62 -0.50 -1.65 16 23 C -0.05 -1.11 7.46 -39.58 -0.30 -1.41 16 24 C -0.15 -3.07 10.05 -39.58 -0.40 -3.46 16 25 C -0.14 -2.63 10.05 -39.58 -0.40 -3.02 16 26 C -0.15 -2.76 10.05 -39.59 -0.40 -3.16 16 27 C -0.12 -2.51 9.68 -39.58 -0.38 -2.89 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.16 4.15 5.50 -52.49 -0.29 3.86 16 32 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.11 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -28.37 322.18 -7.28 -35.65 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -2.73 Total: 2.87 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -4.59 Total: -2.76 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.24 Total: -42.39 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.15 Total: -6.56 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.12 Total: -6.97 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.37 -7.28 -35.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225708170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.898 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds