Wall clock time and date at job start Tue Mar 31 2020 14:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00139 * 2 1 4 4 H 1.48500 * 109.46690 * 269.98962 * 3 2 1 5 5 H 1.48495 * 109.47015 * 29.99383 * 3 2 1 6 6 H 1.48504 * 109.46986 * 149.99597 * 3 2 1 7 7 C 1.37879 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99857 * 188.49110 * 7 2 1 9 9 C 1.50697 * 119.99981 * 8.48129 * 7 2 1 10 10 H 1.09002 * 109.47156 * 185.46025 * 9 7 2 11 11 O 1.42897 * 109.47631 * 305.46838 * 9 7 2 12 12 C 1.35523 * 116.99602 * 269.99890 * 11 9 7 13 13 C 1.39419 * 120.50902 * 179.72135 * 12 11 9 14 14 C 1.38187 * 118.34654 * 179.73079 * 13 12 11 15 15 N 1.32515 * 119.18029 * 0.54183 * 14 13 12 16 16 C 1.31763 * 120.96479 * 359.72239 * 15 14 13 17 17 C 1.50700 * 119.09561 * 180.02562 * 16 15 14 18 18 F 1.39899 * 109.47172 * 284.97915 * 17 16 15 19 19 F 1.39906 * 109.46888 * 44.97369 * 17 16 15 20 20 F 1.39895 * 109.47314 * 164.97397 * 17 16 15 21 21 N 1.31794 * 121.81335 * 359.97438 * 16 15 14 22 22 C 1.50704 * 109.47003 * 65.46729 * 9 7 2 23 23 C 1.38241 * 119.99692 * 269.32834 * 22 9 7 24 24 C 1.38232 * 119.99695 * 180.02562 * 23 22 9 25 25 C 1.38235 * 120.00360 * 0.06696 * 24 23 22 26 26 C 1.38236 * 119.99789 * 359.97438 * 25 24 23 27 27 C 1.38230 * 120.00038 * 359.97438 * 26 25 24 28 28 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.82662 * 0.02562 * 13 12 11 30 30 H 1.08002 * 120.41264 * 180.23908 * 14 13 12 31 31 H 1.07995 * 119.99721 * 0.10399 * 23 22 9 32 32 H 1.07998 * 119.99976 * 180.34627 * 24 23 22 33 33 H 1.07995 * 120.00034 * 179.97438 * 25 24 23 34 34 H 1.08001 * 120.00036 * 179.97438 * 26 25 24 35 35 H 1.08008 * 120.00072 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0757 -1.1991 0.1386 9 6 1.2634 -2.4921 -0.1914 10 1 1.9533 -3.3265 -0.0652 11 8 0.2156 -2.5899 0.7754 12 6 0.5221 -3.1778 1.9574 13 6 -0.4431 -3.3065 2.9552 14 6 -0.0835 -3.9183 4.1409 15 7 1.1601 -4.3497 4.2941 16 6 2.0502 -4.2077 3.3330 17 6 3.4524 -4.7144 3.5522 18 9 4.1341 -3.8441 4.4095 19 9 3.4032 -5.9898 4.1251 20 9 4.1217 -4.7798 2.3254 21 7 1.7477 -3.6357 2.1849 22 6 0.6733 -2.5334 -1.5775 23 6 -0.6042 -2.0540 -1.7994 24 6 -1.1456 -2.0924 -3.0707 25 6 -0.4102 -2.6114 -4.1198 26 6 0.8669 -3.0916 -3.8977 27 6 1.4087 -3.0523 -2.6267 28 1 -0.4850 0.8400 -0.0004 29 1 -1.4481 -2.9414 2.8034 30 1 -0.8057 -4.0390 4.9348 31 1 -1.1786 -1.6483 -0.9798 32 1 -2.1415 -1.7127 -3.2451 33 1 -0.8335 -2.6418 -5.1129 34 1 1.4413 -3.4975 -4.7173 35 1 2.4064 -3.4278 -2.4530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225834842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:16 Heat of formation + Delta-G solvation = -101.863054 kcal Electronic energy + Delta-G solvation = -27347.255485 eV Core-core repulsion = 22896.511200 eV Total energy + Delta-G solvation = -4450.744284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.93770 -47.48147 -47.40109 -40.83316 -38.65679 -37.27313 -33.43492 -33.03808 -31.75477 -30.64699 -29.93849 -27.32985 -26.80676 -24.29274 -22.97051 -22.72735 -21.62104 -20.44315 -18.87201 -18.49298 -18.37100 -17.44911 -16.81965 -16.27062 -15.78493 -15.29896 -15.01741 -14.77633 -14.40303 -14.26074 -14.17570 -13.96402 -13.84976 -13.70121 -13.56387 -13.54404 -13.37212 -13.04194 -12.53176 -12.38902 -11.99974 -11.91644 -11.74506 -11.09612 -10.84651 -10.70252 -10.56283 -10.24918 -10.20888 -9.78767 -9.59756 -9.12075 -8.88538 -8.40452 -8.03616 -7.72738 -6.31437 -4.48116 0.90401 1.52891 2.21507 2.32407 2.48505 3.14882 3.22473 3.26310 3.57736 3.66294 3.83818 4.02487 4.19447 4.59933 4.70596 4.78517 4.98931 5.03415 5.22121 5.46438 5.62585 5.66283 5.73252 5.84506 6.11559 6.29887 6.45924 6.50280 6.63919 6.82191 7.00327 7.15013 7.27085 7.41268 7.57737 7.68019 7.76535 7.94312 8.03952 8.20921 8.64217 9.24076 10.67086 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.004783 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.449490 B = 5853.154111 C = 6412.385637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.082 3.918 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.237 3.763 10 H 0.059 0.941 11 O -0.257 6.257 12 C 0.400 3.600 13 C -0.232 4.232 14 C 0.163 3.837 15 N -0.527 5.527 16 C 0.270 3.730 17 C 0.548 3.452 18 F -0.167 7.167 19 F -0.166 7.166 20 F -0.156 7.156 21 N -0.529 5.529 22 C -0.041 4.041 23 C -0.071 4.071 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.122 4.122 28 H 0.266 0.734 29 H 0.156 0.844 30 H 0.177 0.823 31 H 0.147 0.853 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 -6.993 3.039 7.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.126 4.126 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.184 3.816 10 H 0.077 0.923 11 O -0.156 6.156 12 C 0.213 3.787 13 C -0.256 4.256 14 C 0.003 3.997 15 N -0.249 5.249 16 C -0.003 4.003 17 C 0.491 3.509 18 F -0.148 7.148 19 F -0.147 7.147 20 F -0.137 7.137 21 N -0.261 5.261 22 C -0.042 4.042 23 C -0.090 4.090 24 C -0.158 4.158 25 C -0.163 4.163 26 C -0.155 4.155 27 C -0.140 4.140 28 H 0.076 0.924 29 H 0.174 0.826 30 H 0.194 0.806 31 H 0.165 0.835 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.975 -7.017 2.944 7.671 hybrid contribution -0.004 1.481 -0.324 1.516 sum -0.978 -5.536 2.620 6.202 Atomic orbital electron populations 1.69934 1.05955 1.27142 1.44907 1.25052 0.94906 0.99564 0.93119 0.86545 0.80212 0.82622 0.78557 1.20125 1.20932 1.19513 1.21290 0.94511 0.89669 1.51828 0.91001 1.19135 0.83796 0.97850 0.80857 0.92341 1.86580 1.41919 1.67269 1.19818 1.20226 0.86542 0.83430 0.88481 1.22156 1.02556 1.06483 0.94379 1.22858 0.91574 0.89862 0.95396 1.67864 1.03104 1.22372 1.31577 1.22041 0.94318 0.96186 0.87720 1.17194 0.83872 0.75376 0.74466 1.93230 1.81202 1.69581 1.70826 1.93217 1.96591 1.39974 1.84959 1.93259 1.81490 1.95977 1.42954 1.67729 1.21357 1.14662 1.22360 1.19973 0.93735 0.95123 0.95343 1.21460 0.95502 0.95022 0.96999 1.21122 0.99500 1.01418 0.93807 1.20877 0.95358 1.01962 0.98133 1.20809 0.95899 1.02420 0.96378 1.20779 0.99463 1.01078 0.92684 0.92412 0.82597 0.80615 0.83502 0.87538 0.87722 0.87387 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.38 9.54 55.43 0.53 -20.86 16 2 C 0.08 2.08 5.22 -17.82 -0.09 1.99 16 3 Si 0.89 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.80 8.85 -34.44 -0.30 -14.10 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 C 0.24 5.59 2.34 -29.03 -0.07 5.52 16 10 H 0.06 1.38 6.96 -51.93 -0.36 1.02 16 11 O -0.26 -5.87 7.61 -18.26 -0.14 -6.01 16 12 C 0.40 8.20 7.49 -16.70 -0.13 8.07 16 13 C -0.23 -3.75 10.13 -39.16 -0.40 -4.14 16 14 C 0.16 2.30 11.29 -17.28 -0.20 2.10 16 15 N -0.53 -8.81 10.21 -10.79 -0.11 -8.92 16 16 C 0.27 4.99 7.09 -157.22 -1.11 3.88 16 17 C 0.55 9.22 3.49 36.01 0.13 9.35 16 18 F -0.17 -2.78 17.30 2.25 0.04 -2.74 16 19 F -0.17 -2.57 17.20 2.25 0.04 -2.53 16 20 F -0.16 -2.71 16.87 2.25 0.04 -2.67 16 21 N -0.53 -10.92 8.21 -10.78 -0.09 -11.01 16 22 C -0.04 -0.92 4.82 -104.62 -0.50 -1.43 16 23 C -0.07 -1.56 8.08 -39.58 -0.32 -1.88 16 24 C -0.14 -2.66 10.05 -39.58 -0.40 -3.06 16 25 C -0.15 -2.54 10.05 -39.58 -0.40 -2.94 16 26 C -0.14 -2.44 10.05 -39.59 -0.40 -2.84 16 27 C -0.12 -2.45 9.70 -39.59 -0.38 -2.83 16 28 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.15 3.42 5.98 -52.49 -0.31 3.10 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.11 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -27.39 323.89 -7.17 -34.56 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.76 Total: 2.34 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.57 Total: -2.31 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.33 Total: -40.79 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.14 Total: -6.01 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.12 Total: -7.94 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.39 -7.17 -34.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225834842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.304 kcal (2) G-P(sol) polarization free energy of solvation -27.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds