Wall clock time and date at job start Tue Mar 31 2020 14:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00139 * 2 1 4 4 H 1.48500 * 109.46690 * 269.98962 * 3 2 1 5 5 H 1.48495 * 109.47015 * 29.99383 * 3 2 1 6 6 H 1.48504 * 109.46986 * 149.99597 * 3 2 1 7 7 C 1.37879 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99857 * 188.49110 * 7 2 1 9 9 C 1.50697 * 119.99981 * 8.48129 * 7 2 1 10 10 H 1.09002 * 109.47156 * 185.46025 * 9 7 2 11 11 O 1.42897 * 109.47631 * 305.46838 * 9 7 2 12 12 C 1.35523 * 116.99602 * 269.99890 * 11 9 7 13 13 C 1.39419 * 120.50902 * 179.72135 * 12 11 9 14 14 C 1.38187 * 118.34654 * 179.73079 * 13 12 11 15 15 N 1.32515 * 119.18029 * 0.54183 * 14 13 12 16 16 C 1.31763 * 120.96479 * 359.72239 * 15 14 13 17 17 C 1.50700 * 119.09561 * 180.02562 * 16 15 14 18 18 F 1.39899 * 109.47172 * 284.97915 * 17 16 15 19 19 F 1.39906 * 109.46888 * 44.97369 * 17 16 15 20 20 F 1.39895 * 109.47314 * 164.97397 * 17 16 15 21 21 N 1.31794 * 121.81335 * 359.97438 * 16 15 14 22 22 C 1.50704 * 109.47003 * 65.46729 * 9 7 2 23 23 C 1.38241 * 119.99692 * 269.32834 * 22 9 7 24 24 C 1.38232 * 119.99695 * 180.02562 * 23 22 9 25 25 C 1.38235 * 120.00360 * 0.06696 * 24 23 22 26 26 C 1.38236 * 119.99789 * 359.97438 * 25 24 23 27 27 C 1.38230 * 120.00038 * 359.97438 * 26 25 24 28 28 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.82662 * 0.02562 * 13 12 11 30 30 H 1.08002 * 120.41264 * 180.23908 * 14 13 12 31 31 H 1.07995 * 119.99721 * 0.10399 * 23 22 9 32 32 H 1.07998 * 119.99976 * 180.34627 * 24 23 22 33 33 H 1.07995 * 120.00034 * 179.97438 * 25 24 23 34 34 H 1.08001 * 120.00036 * 179.97438 * 26 25 24 35 35 H 1.08008 * 120.00072 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0757 -1.1991 0.1386 9 6 1.2634 -2.4921 -0.1914 10 1 1.9533 -3.3265 -0.0652 11 8 0.2156 -2.5899 0.7754 12 6 0.5221 -3.1778 1.9574 13 6 -0.4431 -3.3065 2.9552 14 6 -0.0835 -3.9183 4.1409 15 7 1.1601 -4.3497 4.2941 16 6 2.0502 -4.2077 3.3330 17 6 3.4524 -4.7144 3.5522 18 9 4.1341 -3.8441 4.4095 19 9 3.4032 -5.9898 4.1251 20 9 4.1217 -4.7798 2.3254 21 7 1.7477 -3.6357 2.1849 22 6 0.6733 -2.5334 -1.5775 23 6 -0.6042 -2.0540 -1.7994 24 6 -1.1456 -2.0924 -3.0707 25 6 -0.4102 -2.6114 -4.1198 26 6 0.8669 -3.0916 -3.8977 27 6 1.4087 -3.0523 -2.6267 28 1 -0.4850 0.8400 -0.0004 29 1 -1.4481 -2.9414 2.8034 30 1 -0.8057 -4.0390 4.9348 31 1 -1.1786 -1.6483 -0.9798 32 1 -2.1415 -1.7127 -3.2451 33 1 -0.8335 -2.6418 -5.1129 34 1 1.4413 -3.4975 -4.7173 35 1 2.4064 -3.4278 -2.4530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225834842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:15 Heat of formation + Delta-G solvation = -116.383440 kcal Electronic energy + Delta-G solvation = -27347.885136 eV Core-core repulsion = 22896.511200 eV Total energy + Delta-G solvation = -4451.373935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.29047 -48.81543 -48.76971 -42.24603 -40.20841 -38.80722 -35.16410 -34.46155 -33.29485 -32.20014 -31.44278 -28.96072 -28.28619 -25.84916 -24.52505 -24.15490 -23.11557 -22.00271 -20.31538 -19.91421 -19.72468 -19.01944 -18.33044 -17.81610 -17.28682 -16.95120 -16.42866 -16.38772 -15.87736 -15.64682 -15.54933 -15.37509 -15.19748 -15.10853 -15.00970 -14.92410 -14.89638 -14.57224 -14.01583 -13.74807 -13.67590 -13.56451 -13.36885 -12.89072 -12.57718 -12.35524 -11.99966 -11.84932 -11.66453 -11.41888 -11.22495 -10.78064 -10.54728 -9.94725 -9.55041 -9.31257 -8.19497 -6.42729 -0.45975 0.15647 0.69787 0.81936 1.12604 1.32813 1.36157 1.43510 2.16768 2.26046 2.31989 2.46536 2.63161 3.07845 3.19893 3.23970 3.47171 3.66111 3.89830 4.18326 4.25621 4.30612 4.38626 4.51464 4.57653 4.76700 4.93093 5.04704 5.15526 5.31913 5.49276 5.58808 5.75118 5.80443 5.90419 5.94611 6.10722 6.36349 6.41700 6.70570 6.81351 7.30712 8.76321 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.004783 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.449490 B = 5853.154111 C = 6412.385637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.049 3.951 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.050 0.950 9 C 0.246 3.754 10 H 0.041 0.959 11 O -0.273 6.273 12 C 0.362 3.638 13 C -0.224 4.224 14 C 0.180 3.820 15 N -0.525 5.525 16 C 0.254 3.746 17 C 0.552 3.448 18 F -0.166 7.166 19 F -0.156 7.156 20 F -0.163 7.163 21 N -0.557 5.557 22 C -0.070 4.070 23 C -0.090 4.090 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.138 4.138 28 H 0.266 0.734 29 H 0.180 0.820 30 H 0.235 0.765 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 -7.295 2.737 8.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.157 4.157 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.068 0.932 9 C 0.192 3.808 10 H 0.059 0.941 11 O -0.174 6.174 12 C 0.177 3.823 13 C -0.248 4.248 14 C 0.021 3.979 15 N -0.246 5.246 16 C -0.018 4.018 17 C 0.495 3.505 18 F -0.147 7.147 19 F -0.137 7.137 20 F -0.144 7.144 21 N -0.289 5.289 22 C -0.070 4.070 23 C -0.108 4.108 24 C -0.162 4.162 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.157 4.157 28 H 0.075 0.925 29 H 0.197 0.803 30 H 0.251 0.749 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.274 -7.334 2.661 8.127 hybrid contribution 0.356 1.459 -0.167 1.511 sum -1.918 -5.875 2.494 6.664 Atomic orbital electron populations 1.70031 1.06283 1.27342 1.45104 1.25527 0.95666 1.01409 0.93138 0.85836 0.78987 0.80164 0.78379 1.19957 1.20188 1.20266 1.21336 0.93736 0.91402 1.53053 0.93163 1.18861 0.83889 0.96055 0.81987 0.94076 1.86497 1.41338 1.68792 1.20781 1.20749 0.87802 0.84956 0.88839 1.22519 1.02707 1.05807 0.93724 1.23797 0.91295 0.87164 0.95678 1.67994 1.03917 1.22014 1.30700 1.22276 0.95273 0.96638 0.87646 1.17072 0.83408 0.75694 0.74289 1.93227 1.81131 1.69668 1.70723 1.93232 1.96524 1.39226 1.84731 1.93243 1.81596 1.96034 1.43527 1.67616 1.22147 1.15468 1.23689 1.20057 0.94710 0.97059 0.95197 1.21316 0.95394 0.96268 0.97824 1.21410 1.00694 1.01079 0.93024 1.21328 0.94856 0.99899 0.99412 1.21226 0.96353 1.01199 0.96155 1.20994 0.99722 1.01478 0.93466 0.92451 0.80252 0.74907 0.85728 0.85219 0.83730 0.83844 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.14 9.54 21.45 0.20 -43.93 16 2 C 0.05 2.57 5.22 84.66 0.44 3.02 16 3 Si 0.94 42.39 29.55 68.60 2.03 44.42 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.56 -30.10 8.85 25.60 0.23 -29.87 16 8 H 0.05 2.81 7.83 -2.91 -0.02 2.79 16 9 C 0.25 12.21 2.34 29.10 0.07 12.28 16 10 H 0.04 2.09 6.96 -2.39 -0.02 2.07 16 11 O -0.27 -13.03 7.61 -88.27 -0.67 -13.71 16 12 C 0.36 15.20 7.49 84.83 0.64 15.84 16 13 C -0.22 -6.98 10.13 22.54 0.23 -6.75 16 14 C 0.18 4.58 11.29 84.58 0.95 5.53 16 15 N -0.52 -16.67 10.21 -188.06 -1.92 -18.59 16 16 C 0.25 9.40 7.09 138.76 0.98 10.39 16 17 C 0.55 18.73 3.49 71.24 0.25 18.98 16 18 F -0.17 -5.54 17.30 44.97 0.78 -4.76 16 19 F -0.16 -4.73 17.20 44.97 0.77 -3.96 16 20 F -0.16 -5.86 16.87 44.97 0.76 -5.10 16 21 N -0.56 -23.76 8.21 -300.69 -2.47 -26.22 16 22 C -0.07 -3.22 4.82 -19.86 -0.10 -3.31 16 23 C -0.09 -3.95 8.08 22.27 0.18 -3.77 16 24 C -0.14 -5.25 10.05 22.27 0.22 -5.02 16 25 C -0.14 -4.38 10.05 22.27 0.22 -4.15 16 26 C -0.13 -4.39 10.05 22.27 0.22 -4.16 16 27 C -0.14 -5.59 9.70 22.27 0.22 -5.38 16 28 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 29 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 30 H 0.23 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.12 6.00 5.98 -2.91 -0.02 5.98 16 32 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 33 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -62.01 323.89 5.39 -56.62 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.15 Total: 11.63 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 4.76 Total: 3.60 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -4.18 Total: -88.75 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.67 Total: -13.71 kcal Atomic # 9 Polarization: -16.13 SS G_CDS: 2.31 Total: -13.82 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -62.01 5.39 -56.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225834842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.766 kcal (2) G-P(sol) polarization free energy of solvation -62.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds