Wall clock time and date at job start Tue Mar 31 2020 14:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48498 * 109.46912 * 95.24023 * 3 2 1 5 5 H 1.48505 * 109.46926 * 215.23377 * 3 2 1 6 6 H 1.48494 * 109.47361 * 335.23484 * 3 2 1 7 7 C 1.37876 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00258 * 6.40616 * 7 2 1 9 9 C 1.50693 * 119.99890 * 186.41233 * 7 2 1 10 10 H 1.09005 * 109.47451 * 332.82818 * 9 7 2 11 11 O 1.42899 * 109.47146 * 212.82589 * 9 7 2 12 12 C 1.35519 * 116.99954 * 90.00239 * 11 9 7 13 13 C 1.39419 * 120.51091 * 179.72222 * 12 11 9 14 14 C 1.38188 * 118.34790 * 179.73174 * 13 12 11 15 15 N 1.32522 * 119.17685 * 0.54128 * 14 13 12 16 16 C 1.31761 * 120.96838 * 359.72045 * 15 14 13 17 17 C 1.50697 * 119.09640 * 180.02562 * 16 15 14 18 18 F 1.39897 * 109.47266 * 284.98220 * 17 16 15 19 19 F 1.39903 * 109.47023 * 44.97836 * 17 16 15 20 20 F 1.39895 * 109.47269 * 164.97966 * 17 16 15 21 21 N 1.31797 * 121.81157 * 0.02562 * 16 15 14 22 22 C 1.50704 * 109.47159 * 92.82529 * 9 7 2 23 23 C 1.38242 * 119.99820 * 81.72161 * 22 9 7 24 24 C 1.38232 * 119.99626 * 179.81215 * 23 22 9 25 25 C 1.38233 * 120.00192 * 0.39398 * 24 23 22 26 26 C 1.38228 * 120.00274 * 359.85921 * 25 24 23 27 27 C 1.38230 * 120.00177 * 261.99084 * 22 9 7 28 28 H 0.97000 * 120.00007 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.83009 * 0.02562 * 13 12 11 30 30 H 1.08000 * 120.41275 * 180.24364 * 14 13 12 31 31 H 1.07996 * 120.00059 * 359.97438 * 23 22 9 32 32 H 1.08000 * 119.99690 * 180.23150 * 24 23 22 33 33 H 1.08004 * 119.99692 * 179.83825 * 25 24 23 34 34 H 1.07997 * 120.00362 * 179.97438 * 26 25 24 35 35 H 1.07996 * 120.00198 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6073 1.9825 1.3942 5 1 3.4871 1.4747 -0.8078 6 1 1.3957 2.6821 -0.5865 7 6 2.0046 -1.1941 -0.0005 8 1 1.4697 -2.1264 -0.1053 9 6 3.5045 -1.1982 0.1452 10 1 3.9091 -0.2600 -0.2345 11 8 4.0523 -2.2887 -0.5982 12 6 4.3845 -2.0476 -1.8897 13 6 4.9302 -3.0577 -2.6807 14 6 5.2473 -2.7643 -3.9932 15 7 5.0344 -1.5389 -4.4509 16 6 4.5221 -0.6050 -3.6753 17 6 4.2971 0.7741 -4.2396 18 9 5.5233 1.4383 -4.3504 19 9 3.7073 0.6701 -5.5040 20 9 3.4519 1.4940 -3.3885 21 7 4.2009 -0.8439 -2.4196 22 6 3.8674 -1.3494 1.6001 23 6 3.8754 -2.6025 2.1838 24 6 4.2121 -2.7415 3.5173 25 6 4.5328 -1.6267 4.2691 26 6 4.5197 -0.3732 3.6868 27 6 4.1868 -0.2345 2.3522 28 1 -0.4850 0.8400 0.0004 29 1 5.0964 -4.0464 -2.2790 30 1 5.6680 -3.5227 -4.6368 31 1 3.6212 -3.4730 1.5974 32 1 4.2220 -3.7209 3.9724 33 1 4.7933 -1.7352 5.3116 34 1 4.7699 0.4978 4.2742 35 1 4.1768 0.7449 1.8972 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225834844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:18 Heat of formation + Delta-G solvation = -119.908433 kcal Electronic energy + Delta-G solvation = -27526.601706 eV Core-core repulsion = 23075.074915 eV Total energy + Delta-G solvation = -4451.526791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.37574 -48.89205 -48.86838 -42.43010 -40.46290 -39.09587 -35.25624 -34.63926 -33.68691 -32.51612 -31.72211 -29.31140 -28.43475 -25.96624 -24.49856 -24.27137 -23.41344 -22.08067 -20.39821 -19.93888 -19.82128 -19.39233 -18.82005 -18.17744 -17.56443 -16.98131 -16.61442 -16.37250 -16.10059 -15.73508 -15.65764 -15.59746 -15.28506 -15.24314 -15.05806 -15.00371 -14.93817 -14.80979 -14.57601 -14.24786 -13.85390 -13.75276 -13.49817 -12.99699 -12.66897 -12.22145 -12.03442 -11.92746 -11.84606 -11.55307 -11.47435 -10.90441 -10.67843 -10.20534 -9.76231 -9.52596 -8.49871 -6.57444 -0.58411 0.01939 0.50637 0.56505 1.02880 1.18356 1.28482 1.39047 1.91753 2.16200 2.19754 2.33675 2.48992 2.83869 3.04488 3.14954 3.34774 3.49675 3.75654 4.03159 4.06931 4.13908 4.23463 4.32342 4.38059 4.53554 4.74888 4.79540 5.02870 5.09217 5.20981 5.25485 5.58509 5.63842 5.70914 5.76111 5.86031 6.17451 6.24699 6.49096 6.63088 7.10977 8.64967 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.005429 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.306509 B = 5156.579594 C = 6102.588356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.048 3.952 3 Si 0.899 3.101 4 H -0.250 1.250 5 H -0.232 1.232 6 H -0.287 1.287 7 C -0.523 4.523 8 H 0.040 0.960 9 C 0.220 3.780 10 H 0.060 0.940 11 O -0.297 6.297 12 C 0.356 3.644 13 C -0.207 4.207 14 C 0.183 3.817 15 N -0.516 5.516 16 C 0.255 3.745 17 C 0.545 3.455 18 F -0.161 7.161 19 F -0.157 7.157 20 F -0.169 7.169 21 N -0.556 5.556 22 C -0.078 4.078 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.150 4.150 28 H 0.271 0.729 29 H 0.198 0.802 30 H 0.243 0.757 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.216 -4.661 -2.101 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.153 4.153 3 Si 0.723 3.277 4 H -0.174 1.174 5 H -0.155 1.155 6 H -0.214 1.214 7 C -0.561 4.561 8 H 0.059 0.941 9 C 0.165 3.835 10 H 0.078 0.922 11 O -0.200 6.200 12 C 0.170 3.830 13 C -0.229 4.229 14 C 0.023 3.977 15 N -0.236 5.236 16 C -0.017 4.017 17 C 0.488 3.512 18 F -0.142 7.142 19 F -0.138 7.138 20 F -0.150 7.150 21 N -0.287 5.287 22 C -0.079 4.079 23 C -0.135 4.135 24 C -0.136 4.136 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.168 4.168 28 H 0.080 0.920 29 H 0.215 0.785 30 H 0.259 0.741 31 H 0.134 0.866 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.896 -3.909 -2.204 14.603 hybrid contribution -0.701 0.691 0.114 0.991 sum 13.195 -3.218 -2.090 13.742 Atomic orbital electron populations 1.69985 1.07879 1.28468 1.49975 1.25502 0.95212 1.01971 0.92639 0.86495 0.81083 0.79875 0.80213 1.17445 1.15515 1.21364 1.21066 0.90096 0.93713 1.51176 0.94150 1.19329 0.92287 0.86218 0.85675 0.92198 1.86167 1.74583 1.41145 1.18096 1.20625 0.87270 0.88591 0.86468 1.22649 1.03256 1.01770 0.95254 1.24004 0.89497 0.91933 0.92311 1.68015 1.15226 1.02951 1.37441 1.22127 0.97153 0.95095 0.87327 1.17228 0.74712 0.83487 0.75735 1.93226 1.43203 1.81897 1.95876 1.93233 1.83984 1.96161 1.40420 1.93275 1.71543 1.79361 1.70811 1.67572 1.21688 1.25066 1.14353 1.20157 0.97148 0.95028 0.95549 1.21020 0.99976 0.96351 0.96140 1.21469 0.98741 1.00347 0.93027 1.21458 1.00358 0.91800 1.01063 1.21342 0.99659 0.99223 0.93563 1.21073 1.02202 0.97318 0.96248 0.91988 0.78471 0.74074 0.86557 0.83175 0.82579 0.83658 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.96 21.45 0.30 -57.37 16 2 C 0.05 2.83 5.47 84.65 0.46 3.29 16 3 Si 0.90 44.77 25.36 68.60 1.74 46.51 16 4 H -0.25 -11.49 6.41 99.48 0.64 -10.85 16 5 H -0.23 -11.18 5.97 99.48 0.59 -10.58 16 6 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.52 -29.96 9.17 25.60 0.23 -29.73 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 9 C 0.22 10.55 1.81 29.10 0.05 10.60 16 10 H 0.06 2.98 3.83 -2.38 -0.01 2.97 16 11 O -0.30 -12.72 9.03 -88.22 -0.80 -13.52 16 12 C 0.36 13.58 7.49 84.83 0.64 14.22 16 13 C -0.21 -5.23 10.13 22.54 0.23 -5.00 16 14 C 0.18 3.88 11.29 84.58 0.95 4.83 16 15 N -0.52 -15.31 10.21 -188.06 -1.92 -17.23 16 16 C 0.26 9.34 7.09 138.76 0.98 10.32 16 17 C 0.55 19.41 3.49 71.24 0.25 19.66 16 18 F -0.16 -5.19 17.30 44.97 0.78 -4.41 16 19 F -0.16 -5.18 17.20 44.97 0.77 -4.40 16 20 F -0.17 -6.91 16.50 44.97 0.74 -6.17 16 21 N -0.56 -23.37 8.21 -300.69 -2.47 -25.84 16 22 C -0.08 -3.38 4.96 -19.86 -0.10 -3.48 16 23 C -0.12 -4.40 9.36 22.27 0.21 -4.19 16 24 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 25 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 26 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 27 C -0.15 -5.96 9.18 22.27 0.20 -5.76 16 28 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 29 H 0.20 3.38 8.06 -2.91 -0.02 3.35 16 30 H 0.24 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.12 4.35 7.73 -2.91 -0.02 4.33 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.10 4.17 5.60 -2.91 -0.02 4.15 16 Total: -1.00 -73.45 320.63 4.91 -68.54 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.98 Total: 9.21 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.79 Total: 4.69 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -4.09 Total: -100.44 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.80 Total: -13.52 kcal Atomic # 9 Polarization: -17.28 SS G_CDS: 2.29 Total: -14.98 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.74 Total: 46.51 kcal Total: -73.45 4.91 -68.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225834844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.373 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds