Wall clock time and date at job start Tue Mar 31 2020 14:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39778 * 120.09427 * 262.70324 * 3 2 1 5 5 C 1.37715 * 119.90280 * 180.02562 * 4 3 2 6 6 C 1.38980 * 120.09495 * 0.02562 * 5 4 3 7 7 O 1.35762 * 119.90282 * 179.97438 * 6 5 4 8 8 C 1.42901 * 116.99945 * 354.54930 * 7 6 5 9 9 H 1.08995 * 109.46908 * 324.28047 * 8 7 6 10 10 C 1.50694 * 109.47129 * 84.28116 * 8 7 6 11 11 H 1.08002 * 120.00077 * 239.99562 * 10 8 7 12 12 C 1.37880 * 120.00179 * 59.99656 * 10 8 7 13 13 N 1.31509 * 119.99688 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00255 * 179.97438 * 12 10 8 15 15 H 1.48509 * 109.46626 * 60.00375 * 14 12 10 16 16 H 1.48491 * 109.47476 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47173 * 300.00900 * 14 12 10 18 18 C 1.50704 * 109.46610 * 204.28168 * 8 7 6 19 19 C 1.38235 * 119.99490 * 145.00434 * 18 8 7 20 20 C 1.38237 * 119.99487 * 179.97438 * 19 18 8 21 21 C 1.38226 * 120.00283 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00224 * 0.06919 * 21 20 19 23 23 C 1.38229 * 120.00223 * 324.97234 * 18 8 7 24 24 C 1.38943 * 120.19243 * 0.23305 * 6 5 4 25 25 N 1.48007 * 119.95471 * 179.71974 * 24 6 5 26 26 O 1.21799 * 120.00143 * 179.97438 * 25 24 6 27 27 O 1.21809 * 119.99860 * 0.02562 * 25 24 6 28 28 C 1.37757 * 120.09048 * 359.48524 * 24 6 5 29 29 H 1.08003 * 120.04590 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.94966 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99823 * 179.97438 * 13 12 10 32 32 H 1.07996 * 120.00597 * 359.97155 * 19 18 8 33 33 H 1.08002 * 119.99785 * 179.71653 * 20 19 18 34 34 H 1.08002 * 120.00218 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.00750 * 180.02562 * 22 21 20 36 36 H 1.07998 * 119.99983 * 359.97438 * 23 18 8 37 37 H 1.08009 * 120.04543 * 180.25607 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.1546 1.1996 5 6 4.6460 0.1551 1.1949 6 6 5.3389 0.0035 -0.0002 7 8 6.6965 0.0051 -0.0003 8 6 7.3450 0.2863 1.2416 9 1 6.7657 1.0255 1.7947 10 6 7.4485 -0.9798 2.0522 11 1 6.9811 -1.0386 3.0241 12 6 8.1400 -2.0634 1.5532 13 7 8.7095 -1.9916 0.3700 14 14 8.2689 -3.6326 2.5583 15 1 6.9078 -4.1655 2.8206 16 1 9.0584 -4.6396 1.8049 17 1 8.9431 -3.3400 3.8487 18 6 8.7264 0.8270 0.9758 19 6 9.2618 1.7937 1.8063 20 6 10.5291 2.2893 1.5627 21 6 11.2611 1.8179 0.4891 22 6 10.7253 0.8518 -0.3419 23 6 9.4582 0.3559 -0.0981 24 6 4.6463 -0.1444 -1.1956 25 7 5.3896 -0.2993 -2.4661 26 8 4.7832 -0.4295 -3.5144 27 8 6.6076 -0.2975 -2.4632 28 6 3.2687 -0.1519 -1.1993 29 1 2.7311 0.2737 2.1286 30 1 5.1882 0.2744 2.1213 31 1 9.1963 -2.7538 0.0190 32 1 8.6901 2.1618 2.6453 33 1 10.9456 3.0478 2.2089 34 1 12.2510 2.2054 0.2986 35 1 11.2973 0.4831 -1.1805 36 1 9.0402 -0.4001 -0.7464 37 1 2.7311 -0.2711 -2.1284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227291603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:46 Heat of formation + Delta-G solvation = 42.777899 kcal Electronic energy + Delta-G solvation = -26837.173721 eV Core-core repulsion = 22934.558279 eV Total energy + Delta-G solvation = -3902.615442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.03070 -41.24473 -39.86426 -38.74604 -37.35269 -37.22546 -35.02659 -33.17501 -32.42088 -31.58510 -31.15683 -28.90819 -27.40814 -25.63964 -24.29495 -23.65718 -22.97554 -21.87056 -20.96933 -19.56167 -19.50414 -18.40560 -18.25804 -17.91197 -17.72285 -16.93330 -16.76031 -15.83934 -15.69826 -15.60349 -15.15793 -15.06942 -14.78781 -14.58404 -14.14959 -13.87230 -13.82466 -13.58336 -13.34985 -13.21223 -12.95282 -12.83726 -12.72271 -12.46257 -12.38493 -12.18414 -12.01669 -11.92389 -11.73054 -11.18476 -11.06633 -10.77315 -10.65453 -9.46600 -9.34516 -9.18953 -7.97195 -6.43627 -0.99630 -0.34427 0.40492 0.57339 0.81175 1.01219 1.41774 1.45535 1.49708 1.56199 1.74350 2.27084 2.36700 2.59673 2.68289 3.16519 3.34642 3.49640 3.70661 3.76009 3.94944 4.27919 4.34450 4.39516 4.49346 4.54595 4.61376 4.73659 4.92666 4.94689 5.07212 5.21297 5.28019 5.43787 5.46906 5.61426 5.69935 5.86006 5.88257 6.14535 6.28618 6.36785 6.45289 6.58291 6.74904 6.84140 7.36542 8.79665 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.004841 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.371790 B = 5782.846579 C = 6413.201736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.293 3.707 3 C -0.081 4.081 4 C 0.041 3.959 5 C -0.208 4.208 6 C 0.239 3.761 7 O -0.270 6.270 8 C 0.228 3.772 9 H 0.065 0.935 10 C -0.560 4.560 11 H 0.081 0.919 12 C 0.046 3.954 13 N -0.850 5.850 14 Si 0.942 3.058 15 H -0.269 1.269 16 H -0.294 1.294 17 H -0.271 1.271 18 C -0.075 4.075 19 C -0.131 4.131 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.165 4.165 23 C -0.064 4.064 24 C -0.125 4.125 25 N 0.044 4.956 26 O -0.191 6.191 27 O -0.182 6.182 28 C 0.038 3.962 29 H 0.189 0.811 30 H 0.173 0.827 31 H 0.262 0.738 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 6.149 3.810 8.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.022 4.022 3 C -0.086 4.086 4 C 0.021 3.979 5 C -0.227 4.227 6 C 0.183 3.817 7 O -0.176 6.176 8 C 0.175 3.825 9 H 0.083 0.917 10 C -0.596 4.596 11 H 0.099 0.901 12 C -0.161 4.161 13 N -0.484 5.484 14 Si 0.768 3.232 15 H -0.194 1.194 16 H -0.220 1.220 17 H -0.196 1.196 18 C -0.075 4.075 19 C -0.149 4.149 20 C -0.165 4.165 21 C -0.156 4.156 22 C -0.183 4.183 23 C -0.083 4.083 24 C -0.211 4.211 25 N 0.554 4.446 26 O -0.401 6.401 27 O -0.392 6.392 28 C 0.016 3.984 29 H 0.206 0.794 30 H 0.190 0.810 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.133 6.080 4.103 9.561 hybrid contribution 1.219 -1.399 -0.109 1.858 sum -4.914 4.682 3.994 7.875 Atomic orbital electron populations 1.81307 1.12555 1.10891 1.07847 1.25054 0.91644 0.92371 0.93112 1.15355 0.84376 1.15244 0.93643 1.21678 0.92421 0.85705 0.98051 1.21558 0.95027 1.08823 0.97291 1.19520 0.86284 0.83855 0.91996 1.86617 1.12788 1.78105 1.40130 1.19376 0.87852 0.95279 0.79953 0.91704 1.21562 1.36101 0.97274 1.04629 0.90137 1.25659 0.93687 1.01276 0.95488 1.70046 1.31239 1.30094 1.17005 0.85872 0.78335 0.79937 0.79073 1.19430 1.21980 1.19629 1.19844 0.97065 0.95015 0.95585 1.21033 0.96963 0.97255 0.99653 1.21151 0.94690 1.01742 0.98872 1.21257 1.00308 0.98047 0.95975 1.21380 0.96864 0.99244 1.00862 1.21763 0.93723 0.95211 0.97642 1.20424 0.92326 1.26454 0.81925 1.43574 1.01404 0.97050 1.02582 1.94400 1.70212 1.54310 1.21169 1.94714 0.95357 1.55255 1.93896 1.20801 0.89040 0.88257 1.00314 0.79351 0.80955 0.92779 0.85347 0.84164 0.84849 0.86876 0.84297 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.50 18.54 19.00 0.35 -11.15 16 2 C 0.29 6.26 15.33 88.33 1.35 7.61 16 3 C -0.08 -1.66 5.74 -21.30 -0.12 -1.78 16 4 C 0.04 0.75 9.75 22.52 0.22 0.97 16 5 C -0.21 -5.36 8.67 22.32 0.19 -5.16 16 6 C 0.24 8.32 6.58 22.62 0.15 8.47 16 7 O -0.27 -11.50 6.33 -69.67 -0.44 -11.94 16 8 C 0.23 9.28 2.11 29.10 0.06 9.34 16 9 H 0.07 2.25 6.25 -2.39 -0.01 2.23 16 10 C -0.56 -24.52 7.91 25.60 0.20 -24.32 16 11 H 0.08 3.29 7.81 -2.91 -0.02 3.27 16 12 C 0.05 2.15 5.24 84.66 0.44 2.60 16 13 N -0.85 -42.71 8.52 21.45 0.18 -42.53 16 14 Si 0.94 38.51 29.54 68.60 2.03 40.53 16 15 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 16 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 C -0.07 -3.15 4.80 -19.87 -0.10 -3.24 16 19 C -0.13 -4.70 9.68 22.27 0.22 -4.49 16 20 C -0.15 -4.72 10.05 22.27 0.22 -4.50 16 21 C -0.14 -4.62 10.05 22.27 0.22 -4.40 16 22 C -0.17 -6.50 10.05 22.27 0.22 -6.28 16 23 C -0.06 -2.90 7.46 22.27 0.17 -2.74 16 24 C -0.13 -4.19 6.86 36.43 0.25 -3.94 16 25 N 0.04 1.75 4.45 -46.34 -0.21 1.54 16 26 O -0.19 -7.25 18.44 18.89 0.35 -6.90 16 27 O -0.18 -8.46 17.23 25.61 0.44 -8.02 16 28 C 0.04 0.93 9.25 22.52 0.21 1.14 16 29 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.17 4.27 5.65 -2.91 -0.02 4.25 16 31 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 32 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 36 H 0.14 7.15 5.52 -2.91 -0.02 7.13 16 37 H 0.17 3.69 7.60 -2.91 -0.02 3.66 16 Total: -1.00 -59.19 335.32 7.76 -51.42 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.14 Total: 17.75 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 3.92 Total: -30.72 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.33 Total: -52.14 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: 0.35 Total: -26.86 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.53 kcal Total: -59.19 7.76 -51.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227291603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.202 kcal (2) G-P(sol) polarization free energy of solvation -59.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds