Wall clock time and date at job start Tue Mar 31 2020 14:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39769 * 120.09550 * 284.34244 * 3 2 1 5 5 C 1.37712 * 119.90650 * 179.68651 * 4 3 2 6 6 C 1.38985 * 120.09151 * 0.56984 * 5 4 3 7 7 O 1.35754 * 119.90475 * 179.72826 * 6 5 4 8 8 C 1.42899 * 117.00051 * 5.82710 * 7 6 5 9 9 H 1.08997 * 109.47097 * 33.30808 * 8 7 6 10 10 C 1.50706 * 109.47248 * 273.30623 * 8 7 6 11 11 H 1.07996 * 120.00090 * 330.23897 * 10 8 7 12 12 C 1.37877 * 119.99948 * 150.24183 * 10 8 7 13 13 N 1.31505 * 119.99807 * 179.62828 * 12 10 8 14 14 Si 1.86801 * 119.99885 * 359.62006 * 12 10 8 15 15 H 1.48506 * 109.46740 * 86.82447 * 14 12 10 16 16 H 1.48508 * 109.47137 * 206.82006 * 14 12 10 17 17 H 1.48502 * 109.47423 * 326.82514 * 14 12 10 18 18 C 1.50703 * 109.47016 * 153.30628 * 8 7 6 19 19 C 1.38234 * 120.00203 * 38.39139 * 18 8 7 20 20 C 1.38235 * 120.00126 * 179.80864 * 19 18 8 21 21 C 1.38232 * 119.99935 * 0.39632 * 20 19 18 22 22 C 1.38234 * 120.00161 * 359.85596 * 21 20 19 23 23 C 1.38236 * 119.99857 * 359.95574 * 22 21 20 24 24 C 1.38942 * 120.18818 * 359.44931 * 6 5 4 25 25 N 1.48017 * 119.94814 * 180.27083 * 24 6 5 26 26 O 1.21811 * 119.99560 * 180.02562 * 25 24 6 27 27 O 1.21799 * 120.00581 * 0.02562 * 25 24 6 28 28 C 1.37747 * 120.09491 * 0.25724 * 24 6 5 29 29 H 1.08007 * 120.04843 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.95439 * 180.31891 * 5 4 3 31 31 H 0.97004 * 119.99881 * 179.97438 * 13 12 10 32 32 H 1.08000 * 119.99477 * 359.97438 * 19 18 8 33 33 H 1.07994 * 119.99944 * 180.22733 * 20 19 18 34 34 H 1.07995 * 119.99919 * 179.83511 * 21 20 19 35 35 H 1.08004 * 120.00299 * 179.97438 * 22 21 20 36 36 H 1.08003 * 120.00380 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.04658 * 179.97438 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.2986 1.1716 5 6 4.6461 -0.3032 1.1656 6 6 5.3389 0.0008 -0.0003 7 8 6.6964 0.0005 -0.0006 8 6 7.3453 -0.4444 1.1923 9 1 6.7449 -1.2223 1.6640 10 6 7.5007 0.7153 2.1421 11 1 7.6079 1.7184 1.7566 12 6 7.5061 0.4957 3.5033 13 7 7.6491 1.5068 4.3319 14 14 7.3101 -1.2381 4.1704 15 1 8.6404 -1.8942 4.2418 16 1 6.7126 -1.1813 5.5287 17 1 6.4216 -2.0171 3.2709 18 6 8.7042 -0.9977 0.8485 19 6 9.4724 -0.3882 -0.1258 20 6 10.7206 -0.8934 -0.4384 21 6 11.1971 -2.0130 0.2175 22 6 10.4268 -2.6257 1.1881 23 6 9.1802 -2.1182 1.5035 24 6 4.6460 0.2992 -1.1671 25 7 5.3892 0.6163 -2.4073 26 8 4.7826 0.8786 -3.4305 27 8 6.6071 0.6150 -2.4047 28 6 3.2685 0.3002 -1.1714 29 1 2.7314 -0.5313 2.0790 30 1 5.1885 -0.5394 2.0692 31 1 7.6525 1.3524 5.2895 32 1 9.0985 0.4843 -0.6408 33 1 11.3223 -0.4150 -1.1969 34 1 12.1712 -2.4093 -0.0286 35 1 10.7989 -3.5007 1.7003 36 1 8.5785 -2.5965 2.2621 37 1 2.7307 0.5327 -2.0786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227291604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:50 Heat of formation + Delta-G solvation = 49.379154 kcal Electronic energy + Delta-G solvation = -26593.795335 eV Core-core repulsion = 22691.466145 eV Total energy + Delta-G solvation = -3902.329190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88103 -40.24522 -38.87039 -37.78347 -36.29108 -36.07444 -33.52930 -32.14342 -31.60025 -30.60332 -30.28936 -27.71456 -26.28928 -24.36163 -22.99641 -22.64272 -22.08525 -20.59182 -19.93262 -18.36242 -17.92775 -17.66425 -17.20670 -17.16840 -16.72607 -15.86820 -15.34254 -14.83250 -14.67044 -14.37351 -14.22012 -13.89773 -13.75602 -13.45672 -13.14619 -12.91781 -12.83168 -12.60729 -12.53985 -12.17948 -11.98425 -11.58250 -11.32991 -11.18714 -11.10701 -10.76508 -10.73911 -10.60535 -10.33417 -10.09801 -9.89243 -9.70666 -9.13600 -8.46928 -8.38956 -8.09899 -6.61228 -4.68338 0.09659 0.58266 1.51885 1.64058 1.85388 1.93549 2.50747 2.70964 2.79864 2.91388 2.99247 3.21131 3.52299 3.63990 3.86872 4.30431 4.44747 4.58231 4.63432 4.72139 4.92563 5.24853 5.32551 5.39239 5.46022 5.53024 5.61878 5.70903 5.85591 5.90846 6.06369 6.13738 6.23548 6.43505 6.54876 6.66180 6.85311 6.92592 7.01590 7.11895 7.29546 7.43028 7.51803 7.93458 8.02506 8.49292 8.92301 10.49621 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.005305 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.189706 B = 5277.189450 C = 6949.147704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.267 3.733 3 C -0.087 4.087 4 C 0.013 3.987 5 C -0.199 4.199 6 C 0.261 3.739 7 O -0.264 6.264 8 C 0.199 3.801 9 H 0.056 0.944 10 C -0.539 4.539 11 H 0.094 0.906 12 C 0.091 3.909 13 N -0.864 5.864 14 Si 0.850 3.150 15 H -0.257 1.257 16 H -0.278 1.278 17 H -0.259 1.259 18 C -0.048 4.048 19 C -0.089 4.089 20 C -0.122 4.122 21 C -0.138 4.138 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.102 4.102 25 N 0.042 4.958 26 O -0.196 6.196 27 O -0.125 6.125 28 C 0.027 3.973 29 H 0.150 0.850 30 H 0.169 0.831 31 H 0.274 0.726 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 -6.829 -4.882 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.048 4.048 3 C -0.092 4.092 4 C -0.008 4.008 5 C -0.218 4.218 6 C 0.206 3.794 7 O -0.171 6.171 8 C 0.145 3.855 9 H 0.074 0.926 10 C -0.576 4.576 11 H 0.112 0.888 12 C -0.117 4.117 13 N -0.499 5.499 14 Si 0.676 3.324 15 H -0.182 1.182 16 H -0.203 1.203 17 H -0.184 1.184 18 C -0.049 4.049 19 C -0.107 4.107 20 C -0.140 4.140 21 C -0.156 4.156 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.188 4.188 25 N 0.559 4.441 26 O -0.401 6.401 27 O -0.349 6.349 28 C 0.005 3.995 29 H 0.167 0.833 30 H 0.187 0.813 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.727 -6.832 -4.254 8.869 hybrid contribution 0.695 -0.683 0.629 1.160 sum -3.032 -7.516 -3.624 8.878 Atomic orbital electron populations 1.81263 1.11717 1.09541 1.06957 1.25235 0.92026 0.93459 0.94076 1.15457 0.84903 1.14075 0.94727 1.21349 0.93507 0.89236 0.96658 1.21611 0.94319 1.06982 0.98860 1.18934 0.85664 0.84421 0.90375 1.86323 1.12605 1.75947 1.42227 1.19958 0.87783 0.96258 0.81491 0.92624 1.21149 1.52928 0.93761 0.89744 0.88837 1.24875 0.93538 0.96777 0.96479 1.69827 1.45701 1.30634 1.03698 0.87391 0.80291 0.85209 0.79493 1.18167 1.20312 1.18428 1.19961 0.96913 0.93021 0.94961 1.21006 0.93451 0.99613 0.96596 1.21108 0.96160 0.96674 1.00045 1.20967 0.99556 0.97146 0.97908 1.20901 0.94613 1.00093 0.98430 1.20849 0.97045 0.96420 1.00468 1.20214 0.91583 1.22055 0.84908 1.43185 1.01369 0.97904 1.01614 1.94493 1.70478 1.53613 1.21564 1.94625 0.94593 1.54236 1.91440 1.20638 0.90319 0.89943 0.98609 0.83275 0.81335 0.91517 0.85209 0.86494 0.86869 0.86795 0.87288 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.83 18.54 41.84 0.78 -5.06 16 2 C 0.27 3.22 15.33 -22.47 -0.34 2.87 16 3 C -0.09 -1.00 5.74 -106.84 -0.61 -1.61 16 4 C 0.01 0.15 9.75 -39.20 -0.38 -0.23 16 5 C -0.20 -2.94 8.72 -39.50 -0.34 -3.29 16 6 C 0.26 4.36 6.60 -39.04 -0.26 4.11 16 7 O -0.26 -5.08 7.03 -41.15 -0.29 -5.37 16 8 C 0.20 4.00 1.54 -29.03 -0.04 3.96 16 9 H 0.06 1.07 3.33 -51.93 -0.17 0.89 16 10 C -0.54 -12.74 8.42 -34.44 -0.29 -13.03 16 11 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 12 C 0.09 2.18 5.47 -17.82 -0.10 2.08 16 13 N -0.86 -22.67 13.96 55.43 0.77 -21.90 16 14 Si 0.85 17.17 23.67 -169.99 -4.02 13.14 16 15 H -0.26 -5.17 6.70 56.52 0.38 -4.79 16 16 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 17 H -0.26 -4.61 5.82 56.52 0.33 -4.28 16 18 C -0.05 -0.94 4.90 -104.62 -0.51 -1.45 16 19 C -0.09 -1.64 9.36 -39.58 -0.37 -2.01 16 20 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 21 C -0.14 -2.06 10.05 -39.58 -0.40 -2.46 16 22 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.13 -2.36 8.67 -39.58 -0.34 -2.71 16 24 C -0.10 -1.58 6.86 -79.87 -0.55 -2.13 16 25 N 0.04 0.73 4.45 34.00 0.15 0.88 16 26 O -0.20 -3.31 18.44 -29.46 -0.54 -3.85 16 27 O -0.12 -2.37 17.23 -36.51 -0.63 -3.00 16 28 C 0.03 0.33 9.25 -39.20 -0.36 -0.04 16 29 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.17 2.72 4.57 -52.48 -0.24 2.48 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.13 2.44 7.73 -52.49 -0.41 2.04 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.11 1.92 5.26 -52.48 -0.28 1.64 16 37 H 0.16 1.67 7.60 -52.49 -0.40 1.27 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -26.94 330.79 -7.34 -34.28 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -2.84 Total: 6.51 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -5.70 Total: -20.61 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 1.70 Total: -26.08 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.46 Total: -12.22 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -4.02 Total: 13.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.94 -7.34 -34.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227291604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.661 kcal (2) G-P(sol) polarization free energy of solvation -26.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds