Wall clock time and date at job start Tue Mar 31 2020 14:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39722 * 120.19129 * 88.85010 * 3 2 1 5 5 C 1.37821 * 119.89812 * 180.29803 * 4 3 2 6 6 N 1.48010 * 119.84974 * 179.70085 * 5 4 3 7 7 O 1.21802 * 119.99829 * 180.02562 * 6 5 4 8 8 O 1.21798 * 119.99992 * 0.02562 * 6 5 4 9 9 C 1.38511 * 120.29803 * 359.72392 * 5 4 3 10 10 C 1.38102 * 120.39342 * 0.02562 * 9 5 4 11 11 C 1.38649 * 120.08977 * 0.02562 * 10 9 5 12 12 O 1.35712 * 120.14920 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99761 * 354.53904 * 12 11 10 14 14 H 1.09001 * 109.47103 * 324.33233 * 13 12 11 15 15 C 1.50704 * 109.47321 * 84.33258 * 13 12 11 16 16 H 1.08004 * 119.99942 * 239.99912 * 15 13 12 17 17 C 1.37878 * 119.99723 * 59.99999 * 15 13 12 18 18 N 1.31513 * 120.00327 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 119.99646 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47299 * 59.99897 * 19 17 15 21 21 H 1.48496 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47253 * 300.00084 * 19 17 15 23 23 C 1.50702 * 109.47033 * 204.33299 * 13 12 11 24 24 C 1.38238 * 119.99792 * 324.72432 * 23 13 12 25 25 C 1.38238 * 119.99842 * 179.80925 * 24 23 13 26 26 C 1.38232 * 119.99867 * 0.39734 * 25 24 23 27 27 C 1.38241 * 120.00202 * 359.85997 * 26 25 24 28 28 C 1.38229 * 119.99690 * 359.95046 * 27 26 25 29 29 H 1.08000 * 120.04848 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.80656 * 180.02562 * 9 5 4 31 31 H 1.08000 * 119.96041 * 179.97438 * 10 9 5 32 32 H 0.96996 * 120.00042 * 180.02562 * 18 17 15 33 33 H 1.07994 * 119.99876 * 359.97438 * 24 23 13 34 34 H 1.07998 * 119.99973 * 180.23019 * 25 24 23 35 35 H 1.08001 * 120.00338 * 179.83305 * 26 25 24 36 36 H 1.08001 * 120.00011 * 179.97438 * 27 26 25 37 37 H 1.08001 * 119.99719 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 -0.0233 -1.2074 5 6 4.6488 -0.0287 -1.2003 6 7 5.3921 -0.0608 -2.4798 7 8 6.6101 -0.0662 -2.4767 8 8 4.7857 -0.0818 -3.5359 9 6 5.3415 -0.0048 -0.0010 10 6 4.6593 0.0241 1.1994 11 6 3.2729 0.0290 1.2111 12 8 2.6013 0.0569 2.3901 13 6 3.3813 -0.0408 3.5834 14 1 4.2240 -0.7109 3.4129 15 6 3.8940 1.3249 3.9617 16 1 4.9572 1.5041 4.0251 17 6 3.0058 2.3456 4.2270 18 7 1.7112 2.1275 4.1494 19 14 3.6414 4.0385 4.6952 20 1 4.4837 4.5728 3.5951 21 1 2.4935 4.9515 4.9271 22 1 4.4524 3.9373 5.9351 23 6 2.5261 -0.5832 4.6995 24 6 1.1887 -0.2415 4.7740 25 6 0.4033 -0.7422 5.7955 26 6 0.9572 -1.5780 6.7471 27 6 2.2959 -1.9154 6.6755 28 6 3.0803 -1.4179 5.6519 29 1 2.7346 -0.0419 -2.1448 30 1 6.4215 -0.0089 -0.0047 31 1 5.2065 0.0422 2.1304 32 1 1.0864 2.8457 4.3357 33 1 0.7569 0.4145 4.0327 34 1 -0.6424 -0.4782 5.8516 35 1 0.3443 -1.9670 7.5467 36 1 2.7288 -2.5681 7.4192 37 1 4.1261 -1.6819 5.5957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227313001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:29 Heat of formation + Delta-G solvation = 48.015048 kcal Electronic energy + Delta-G solvation = -26302.857138 eV Core-core repulsion = 22400.468796 eV Total energy + Delta-G solvation = -3902.388342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97001 -40.19343 -38.52607 -37.13271 -36.38108 -36.12026 -33.56274 -31.71682 -31.19572 -30.56721 -29.90383 -27.48437 -25.96952 -24.17585 -23.70021 -22.16329 -21.64908 -20.59751 -19.88531 -18.51705 -18.16996 -17.33464 -17.16013 -16.58017 -16.43000 -15.65324 -15.38789 -14.54988 -14.52059 -14.40649 -13.88896 -13.54458 -13.34188 -13.03994 -12.93775 -12.65948 -12.47743 -12.42011 -12.15639 -11.88466 -11.82618 -11.45412 -11.30919 -11.18561 -11.01569 -10.98021 -10.90757 -10.76470 -10.38447 -9.82475 -9.74310 -9.32323 -9.15962 -8.29302 -8.05880 -7.82166 -6.42721 -4.83407 0.13781 0.67077 1.59419 1.60470 2.14482 2.32761 2.93367 2.97136 3.01163 3.08901 3.10081 3.55244 3.79958 3.94135 3.98003 4.53557 4.67713 4.73768 4.79027 4.92535 5.08154 5.49151 5.55643 5.58351 5.63719 5.72454 5.79050 5.91968 5.95357 6.12476 6.27029 6.41002 6.54318 6.59662 6.75388 6.97726 7.19040 7.22951 7.33074 7.50665 7.62582 7.73677 7.84880 7.87890 7.94673 8.31746 8.96517 10.39480 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.004244 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.323451 B = 6595.227815 C = 7209.351255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.272 3.728 3 C -0.088 4.088 4 C 0.032 3.968 5 C -0.114 4.114 6 N 0.046 4.954 7 O -0.176 6.176 8 O -0.181 6.181 9 C 0.006 3.994 10 C -0.201 4.201 11 C 0.271 3.729 12 O -0.267 6.267 13 C 0.230 3.770 14 H 0.048 0.952 15 C -0.553 4.553 16 H 0.076 0.924 17 C 0.086 3.914 18 N -0.839 5.839 19 Si 0.901 3.099 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.271 1.271 23 C -0.051 4.051 24 C -0.048 4.048 25 C -0.149 4.149 26 C -0.138 4.138 27 C -0.146 4.146 28 C -0.121 4.121 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.272 0.728 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -4.723 -1.685 6.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.044 4.044 3 C -0.093 4.093 4 C 0.010 3.990 5 C -0.198 4.198 6 N 0.560 4.440 7 O -0.389 6.389 8 O -0.393 6.393 9 C -0.014 4.014 10 C -0.221 4.221 11 C 0.214 3.786 12 O -0.174 6.174 13 C 0.178 3.822 14 H 0.065 0.935 15 C -0.589 4.589 16 H 0.094 0.906 17 C -0.124 4.124 18 N -0.472 5.472 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.196 1.196 23 C -0.051 4.051 24 C -0.066 4.066 25 C -0.168 4.168 26 C -0.156 4.156 27 C -0.165 4.165 28 C -0.139 4.139 29 H 0.176 0.824 30 H 0.172 0.828 31 H 0.185 0.815 32 H 0.083 0.917 33 H 0.180 0.820 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.423 -4.594 -0.962 4.904 hybrid contribution 1.097 1.154 0.371 1.635 sum 2.520 -3.439 -0.591 4.305 Atomic orbital electron populations 1.81174 1.11632 1.09123 1.06746 1.24837 0.91763 0.93750 0.94029 1.14981 0.85511 1.17688 0.91113 1.20582 0.91142 0.89075 0.98157 1.20474 0.91729 1.23963 0.83669 1.43437 1.01061 0.96813 1.02670 1.94507 0.95721 1.54407 1.94259 1.94512 1.70282 1.54620 1.19852 1.20941 1.01757 0.89553 0.89106 1.21436 0.92986 1.08366 0.99291 1.19426 0.90629 0.81544 0.86972 1.86444 1.39275 1.79533 1.12133 1.19377 0.88031 0.96506 0.78289 0.93458 1.21335 0.93933 0.93344 1.50243 0.90612 1.25088 0.94686 0.99819 0.92784 1.69785 1.01395 1.32557 1.43449 0.86489 0.78871 0.82486 0.79487 1.19566 1.20716 1.19637 1.19607 0.94391 0.94498 0.96633 1.21861 0.93257 0.93319 0.98206 1.21170 0.99379 0.99387 0.96816 1.20910 0.95291 1.00204 0.99214 1.20742 0.94323 1.02334 0.99053 1.20723 0.98914 0.98528 0.95778 0.82390 0.82812 0.81494 0.91719 0.82024 0.87689 0.87857 0.87517 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.79 18.54 41.84 0.78 -7.02 16 2 C 0.27 4.69 14.87 -22.47 -0.33 4.36 16 3 C -0.09 -1.34 5.75 -106.70 -0.61 -1.96 16 4 C 0.03 0.43 9.26 -39.18 -0.36 0.06 16 5 C -0.11 -1.55 6.84 -80.00 -0.55 -2.09 16 6 N 0.05 0.68 4.45 33.94 0.15 0.84 16 7 O -0.18 -2.68 18.43 -29.46 -0.54 -3.23 16 8 O -0.18 -2.79 18.43 -29.46 -0.54 -3.33 16 9 C 0.01 0.08 9.54 -39.53 -0.38 -0.30 16 10 C -0.20 -2.83 8.69 -39.48 -0.34 -3.17 16 11 C 0.27 4.48 6.59 -38.71 -0.26 4.23 16 12 O -0.27 -5.28 7.78 -18.84 -0.15 -5.43 16 13 C 0.23 4.53 2.11 -29.03 -0.06 4.46 16 14 H 0.05 0.81 6.26 -51.93 -0.33 0.49 16 15 C -0.55 -11.90 7.93 -34.44 -0.27 -12.18 16 16 H 0.08 1.56 7.81 -52.48 -0.41 1.15 16 17 C 0.09 1.94 5.24 -17.82 -0.09 1.85 16 18 N -0.84 -19.73 8.50 55.43 0.47 -19.26 16 19 Si 0.90 18.34 29.54 -169.99 -5.02 13.32 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 C -0.05 -1.03 4.80 -104.62 -0.50 -1.53 16 24 C -0.05 -1.01 7.46 -39.58 -0.30 -1.30 16 25 C -0.15 -2.83 10.05 -39.58 -0.40 -3.22 16 26 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 27 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 28 C -0.12 -2.20 9.68 -39.59 -0.38 -2.58 16 29 H 0.16 1.80 7.59 -52.49 -0.40 1.41 16 30 H 0.15 1.60 7.59 -52.49 -0.40 1.20 16 31 H 0.17 2.26 5.67 -52.49 -0.30 1.97 16 32 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 33 H 0.16 3.77 5.50 -52.49 -0.29 3.48 16 34 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -24.91 336.89 -8.36 -33.26 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -2.94 Total: 4.77 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -5.64 Total: -19.00 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 1.40 Total: -25.44 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.23 Total: -11.99 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -24.91 -8.36 -33.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227313001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.279 kcal (2) G-P(sol) polarization free energy of solvation -24.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds