Wall clock time and date at job start Tue Mar 31 2020 14:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39722 * 120.19129 * 88.85010 * 3 2 1 5 5 C 1.37821 * 119.89812 * 180.29803 * 4 3 2 6 6 N 1.48010 * 119.84974 * 179.70085 * 5 4 3 7 7 O 1.21802 * 119.99829 * 180.02562 * 6 5 4 8 8 O 1.21798 * 119.99992 * 0.02562 * 6 5 4 9 9 C 1.38511 * 120.29803 * 359.72392 * 5 4 3 10 10 C 1.38102 * 120.39342 * 0.02562 * 9 5 4 11 11 C 1.38649 * 120.08977 * 0.02562 * 10 9 5 12 12 O 1.35712 * 120.14920 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99761 * 354.53904 * 12 11 10 14 14 H 1.09001 * 109.47103 * 324.33233 * 13 12 11 15 15 C 1.50704 * 109.47321 * 84.33258 * 13 12 11 16 16 H 1.08004 * 119.99942 * 239.99912 * 15 13 12 17 17 C 1.37878 * 119.99723 * 59.99999 * 15 13 12 18 18 N 1.31513 * 120.00327 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 119.99646 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47299 * 59.99897 * 19 17 15 21 21 H 1.48496 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47253 * 300.00084 * 19 17 15 23 23 C 1.50702 * 109.47033 * 204.33299 * 13 12 11 24 24 C 1.38238 * 119.99792 * 324.72432 * 23 13 12 25 25 C 1.38238 * 119.99842 * 179.80925 * 24 23 13 26 26 C 1.38232 * 119.99867 * 0.39734 * 25 24 23 27 27 C 1.38241 * 120.00202 * 359.85997 * 26 25 24 28 28 C 1.38229 * 119.99690 * 359.95046 * 27 26 25 29 29 H 1.08000 * 120.04848 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.80656 * 180.02562 * 9 5 4 31 31 H 1.08000 * 119.96041 * 179.97438 * 10 9 5 32 32 H 0.96996 * 120.00042 * 180.02562 * 18 17 15 33 33 H 1.07994 * 119.99876 * 359.97438 * 24 23 13 34 34 H 1.07998 * 119.99973 * 180.23019 * 25 24 23 35 35 H 1.08001 * 120.00338 * 179.83305 * 26 25 24 36 36 H 1.08001 * 120.00011 * 179.97438 * 27 26 25 37 37 H 1.08001 * 119.99719 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 -0.0233 -1.2074 5 6 4.6488 -0.0287 -1.2003 6 7 5.3921 -0.0608 -2.4798 7 8 6.6101 -0.0662 -2.4767 8 8 4.7857 -0.0818 -3.5359 9 6 5.3415 -0.0048 -0.0010 10 6 4.6593 0.0241 1.1994 11 6 3.2729 0.0290 1.2111 12 8 2.6013 0.0569 2.3901 13 6 3.3813 -0.0408 3.5834 14 1 4.2240 -0.7109 3.4129 15 6 3.8940 1.3249 3.9617 16 1 4.9572 1.5041 4.0251 17 6 3.0058 2.3456 4.2270 18 7 1.7112 2.1275 4.1494 19 14 3.6414 4.0385 4.6952 20 1 4.4837 4.5728 3.5951 21 1 2.4935 4.9515 4.9271 22 1 4.4524 3.9373 5.9351 23 6 2.5261 -0.5832 4.6995 24 6 1.1887 -0.2415 4.7740 25 6 0.4033 -0.7422 5.7955 26 6 0.9572 -1.5780 6.7471 27 6 2.2959 -1.9154 6.6755 28 6 3.0803 -1.4179 5.6519 29 1 2.7346 -0.0419 -2.1448 30 1 6.4215 -0.0089 -0.0047 31 1 5.2065 0.0422 2.1304 32 1 1.0864 2.8457 4.3357 33 1 0.7569 0.4145 4.0327 34 1 -0.6424 -0.4782 5.8516 35 1 0.3443 -1.9670 7.5467 36 1 2.7288 -2.5681 7.4192 37 1 4.1261 -1.6819 5.5957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227313001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:29 Heat of formation + Delta-G solvation = 39.458301 kcal Electronic energy + Delta-G solvation = -26303.228186 eV Core-core repulsion = 22400.468796 eV Total energy + Delta-G solvation = -3902.759390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.14464 -41.47337 -39.88623 -38.47325 -37.59410 -37.48281 -35.12261 -33.00148 -32.49193 -31.88134 -31.30360 -28.99302 -27.19752 -25.42299 -25.13652 -23.44167 -23.02128 -21.97813 -21.12047 -19.70577 -19.57267 -18.50219 -18.43276 -17.99449 -17.73190 -17.02612 -16.86044 -15.98571 -15.78673 -15.72179 -15.22110 -14.99907 -14.68727 -14.36380 -14.22516 -14.05200 -13.88334 -13.76979 -13.56993 -13.30298 -13.20613 -12.85362 -12.70266 -12.55913 -12.43958 -12.19723 -12.17824 -12.17769 -11.85000 -11.27604 -11.19937 -10.83054 -10.45399 -9.61034 -9.46437 -9.28280 -8.06537 -6.51010 -1.04779 -0.48278 0.40439 0.42786 0.72940 0.91525 1.39097 1.43521 1.46776 1.56578 1.71683 2.24255 2.32182 2.52898 2.68567 3.10596 3.25756 3.45539 3.68859 3.74301 3.88242 4.23686 4.28995 4.33161 4.44286 4.49237 4.54644 4.64261 4.69846 4.89200 4.98790 5.11979 5.18680 5.36584 5.42079 5.53949 5.60806 5.78985 5.81190 6.03126 6.17314 6.34011 6.41126 6.48681 6.63674 6.76872 7.29856 8.71118 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.004244 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.323451 B = 6595.227815 C = 7209.351255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.284 3.716 3 C -0.095 4.095 4 C 0.049 3.951 5 C -0.112 4.112 6 N 0.046 4.954 7 O -0.172 6.172 8 O -0.193 6.193 9 C 0.027 3.973 10 C -0.197 4.197 11 C 0.251 3.749 12 O -0.292 6.292 13 C 0.230 3.770 14 H 0.070 0.930 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.047 3.953 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.268 1.268 21 H -0.294 1.294 22 H -0.271 1.271 23 C -0.074 4.074 24 C -0.071 4.071 25 C -0.165 4.165 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.128 4.128 29 H 0.177 0.823 30 H 0.183 0.817 31 H 0.176 0.824 32 H 0.262 0.738 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 -5.812 -1.335 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.030 4.030 3 C -0.100 4.100 4 C 0.027 3.973 5 C -0.197 4.197 6 N 0.559 4.441 7 O -0.387 6.387 8 O -0.403 6.403 9 C 0.007 3.993 10 C -0.216 4.216 11 C 0.195 3.805 12 O -0.201 6.201 13 C 0.178 3.822 14 H 0.088 0.912 15 C -0.591 4.591 16 H 0.101 0.899 17 C -0.159 4.159 18 N -0.494 5.494 19 Si 0.768 3.232 20 H -0.192 1.192 21 H -0.221 1.221 22 H -0.196 1.196 23 C -0.075 4.075 24 C -0.090 4.090 25 C -0.184 4.184 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.146 4.146 29 H 0.194 0.806 30 H 0.201 0.799 31 H 0.193 0.807 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.642 -5.687 -0.644 6.784 hybrid contribution 0.485 1.418 0.204 1.513 sum 4.127 -4.268 -0.440 5.954 Atomic orbital electron populations 1.81169 1.12793 1.10699 1.07958 1.25186 0.92223 0.92673 0.92933 1.14980 0.84448 1.18968 0.91617 1.20669 0.91211 0.87387 0.98017 1.20564 0.91764 1.23743 0.83593 1.43538 1.01061 0.96645 1.02839 1.94505 0.95844 1.54059 1.94314 1.94525 1.70280 1.55249 1.20213 1.21184 1.03049 0.87152 0.87886 1.21456 0.91742 1.08207 1.00201 1.19725 0.91799 0.82646 0.86289 1.86379 1.39826 1.80866 1.12996 1.19368 0.88550 0.95998 0.78283 0.91188 1.21624 0.94055 0.94182 1.49241 0.89937 1.25637 0.94917 1.01915 0.93466 1.70001 1.01908 1.32308 1.45213 0.85852 0.77862 0.80274 0.79184 1.19245 1.22055 1.19566 1.19869 0.94316 0.95576 0.97717 1.21664 0.94327 0.94289 0.98695 1.21352 0.99792 1.00114 0.97101 1.21268 0.96040 0.99104 0.99134 1.21191 0.94063 1.01822 0.99045 1.21062 1.00266 0.97875 0.95420 0.80571 0.79939 0.80721 0.92829 0.85070 0.87077 0.84797 0.83968 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.64 18.54 19.00 0.35 -17.29 16 2 C 0.28 10.03 14.87 88.33 1.31 11.34 16 3 C -0.09 -2.85 5.75 -21.21 -0.12 -2.97 16 4 C 0.05 1.21 9.26 22.53 0.21 1.41 16 5 C -0.11 -2.74 6.84 36.34 0.25 -2.49 16 6 N 0.05 1.24 4.45 -46.55 -0.21 1.03 16 7 O -0.17 -4.75 18.43 18.88 0.35 -4.40 16 8 O -0.19 -5.56 18.43 18.89 0.35 -5.21 16 9 C 0.03 0.59 9.54 22.30 0.21 0.80 16 10 C -0.20 -5.10 8.69 22.34 0.19 -4.91 16 11 C 0.25 8.14 6.59 22.83 0.15 8.29 16 12 O -0.29 -11.73 7.78 -90.33 -0.70 -12.43 16 13 C 0.23 8.97 2.11 29.10 0.06 9.03 16 14 H 0.07 2.30 6.26 -2.39 -0.01 2.28 16 15 C -0.56 -23.61 7.93 25.60 0.20 -23.41 16 16 H 0.08 3.29 7.81 -2.91 -0.02 3.27 16 17 C 0.05 2.14 5.24 84.66 0.44 2.58 16 18 N -0.86 -42.04 8.50 21.45 0.18 -41.86 16 19 Si 0.94 37.86 29.54 68.60 2.03 39.88 16 20 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 C -0.07 -3.01 4.80 -19.86 -0.10 -3.11 16 24 C -0.07 -3.08 7.46 22.27 0.17 -2.91 16 25 C -0.17 -6.31 10.05 22.27 0.22 -6.08 16 26 C -0.14 -4.45 10.05 22.27 0.22 -4.23 16 27 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 28 C -0.13 -4.41 9.68 22.27 0.22 -4.20 16 29 H 0.18 3.69 7.59 -2.91 -0.02 3.66 16 30 H 0.18 2.99 7.59 -2.91 -0.02 2.97 16 31 H 0.18 4.29 5.67 -2.91 -0.02 4.28 16 32 H 0.26 12.78 8.31 -92.71 -0.77 12.01 16 33 H 0.13 6.52 5.50 -2.91 -0.02 6.50 16 34 H 0.11 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -54.66 336.89 7.36 -47.29 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 1.14 Total: 18.04 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.87 Total: -25.06 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.33 Total: -58.12 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.01 Total: -22.04 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.88 kcal Total: -54.66 7.36 -47.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227313001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.753 kcal (2) G-P(sol) polarization free energy of solvation -54.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds