Wall clock time and date at job start Tue Mar 31 2020 14:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39708 * 120.19603 * 313.50626 * 3 2 1 5 5 C 1.37823 * 119.89986 * 180.30104 * 4 3 2 6 6 N 1.48007 * 119.84816 * 179.70007 * 5 4 3 7 7 O 1.21802 * 119.99738 * 180.02562 * 6 5 4 8 8 O 1.21794 * 120.00433 * 0.02562 * 6 5 4 9 9 C 1.38505 * 120.29775 * 359.71883 * 5 4 3 10 10 C 1.38108 * 120.39480 * 0.02562 * 9 5 4 11 11 C 1.38647 * 120.08726 * 0.02562 * 10 9 5 12 12 O 1.35708 * 120.14914 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99592 * 5.76402 * 12 11 10 14 14 H 1.09001 * 109.46995 * 35.37073 * 13 12 11 15 15 C 1.50697 * 109.47245 * 275.36531 * 13 12 11 16 16 H 1.08004 * 120.00192 * 334.72494 * 15 13 12 17 17 C 1.37876 * 119.99797 * 154.72155 * 15 13 12 18 18 N 1.31519 * 119.99826 * 174.65652 * 17 15 13 19 19 Si 1.86798 * 120.00074 * 354.66047 * 17 15 13 20 20 H 1.48505 * 109.46977 * 94.75412 * 19 17 15 21 21 H 1.48503 * 109.47392 * 214.74695 * 19 17 15 22 22 H 1.48497 * 109.47382 * 334.75378 * 19 17 15 23 23 C 1.50708 * 109.46791 * 155.36481 * 13 12 11 24 24 C 1.38228 * 120.00067 * 215.64909 * 23 13 12 25 25 C 1.38229 * 120.00014 * 179.97438 * 24 23 13 26 26 C 1.38233 * 120.00383 * 0.02562 * 25 24 23 27 27 C 1.38234 * 119.99595 * 0.06665 * 26 25 24 28 28 C 1.38237 * 119.99573 * 35.63095 * 23 13 12 29 29 H 1.07999 * 120.05037 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.80715 * 180.02562 * 9 5 4 31 31 H 1.07992 * 119.95654 * 179.97438 * 10 9 5 32 32 H 0.97002 * 119.99986 * 180.02562 * 18 17 15 33 33 H 1.08001 * 120.00035 * 359.97438 * 24 23 13 34 34 H 1.08004 * 119.99829 * 179.72126 * 25 24 23 35 35 H 1.07994 * 120.00529 * 179.97438 * 26 25 24 36 36 H 1.07997 * 120.00293 * 180.02562 * 27 26 25 37 37 H 1.07996 * 120.00402 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2711 -0.8303 0.8758 5 6 4.6493 -0.8203 0.8750 6 7 5.3929 -1.6962 1.8079 7 8 6.6109 -1.6891 1.8098 8 8 4.7870 -2.4241 2.5737 9 6 5.3415 0.0061 0.0053 10 6 4.6589 0.8286 -0.8693 11 6 3.2725 0.8322 -0.8814 12 8 2.6005 1.6404 -1.7399 13 6 3.3804 2.3681 -2.6908 14 1 4.2279 1.7599 -3.0071 15 6 3.8830 3.6408 -2.0596 16 1 3.3448 4.0835 -1.2344 17 6 5.0299 4.2401 -2.5353 18 7 5.4110 5.4041 -2.0561 19 14 6.0425 3.3989 -3.8607 20 1 5.6387 3.9140 -5.1937 21 1 7.4832 3.6810 -3.6368 22 1 5.8105 1.9332 -3.8053 23 6 2.5284 2.7034 -3.8879 24 6 3.0849 2.7069 -5.1532 25 6 2.3033 3.0139 -6.2512 26 6 0.9653 3.3180 -6.0839 27 6 0.4092 3.3164 -4.8183 28 6 1.1902 3.0071 -3.7204 29 1 2.7354 -1.4764 1.5556 30 1 6.4215 0.0073 0.0111 31 1 5.2057 1.4704 -1.5440 32 1 6.2177 5.8259 -2.3910 33 1 4.1304 2.4697 -5.2839 34 1 2.7392 3.0211 -7.2393 35 1 0.3547 3.5583 -6.9416 36 1 -0.6363 3.5535 -4.6875 37 1 0.7553 3.0037 -2.7320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227313002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:32 Heat of formation + Delta-G solvation = 47.864547 kcal Electronic energy + Delta-G solvation = -26150.236162 eV Core-core repulsion = 22247.841294 eV Total energy + Delta-G solvation = -3902.394868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.08653 -40.50436 -38.90999 -37.50178 -36.49726 -36.34926 -33.59396 -32.00823 -31.62197 -30.87929 -30.46750 -27.81216 -26.15467 -24.33615 -23.67580 -22.44169 -22.13159 -20.68838 -20.08365 -18.62345 -18.01555 -17.73339 -17.43095 -17.29840 -16.73887 -15.98057 -15.42767 -14.95472 -14.77905 -14.44917 -14.28382 -13.68103 -13.41050 -13.27326 -13.25109 -13.18479 -12.89944 -12.69236 -12.60049 -12.28507 -12.20119 -11.57268 -11.49366 -11.31621 -11.17575 -11.10306 -11.06112 -10.69708 -10.48807 -10.10144 -10.01542 -9.48740 -9.14174 -8.63230 -8.51658 -8.19751 -6.65456 -4.73042 -0.01981 0.48457 1.42785 1.46343 1.74856 1.80799 2.68115 2.76731 2.79682 2.87206 2.97908 3.17770 3.57495 3.70095 3.83934 4.19618 4.38221 4.60298 4.66817 4.70396 4.85320 5.23073 5.26587 5.28995 5.38690 5.45420 5.51752 5.60973 5.73740 5.84841 5.97127 6.01612 6.19497 6.32492 6.42080 6.46806 6.77927 6.82779 6.87863 6.99450 7.32891 7.39280 7.50644 7.74309 7.87582 8.43000 8.87775 10.45360 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.004592 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.425344 B = 6095.565730 C = 7586.095632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.270 3.730 3 C -0.080 4.080 4 C 0.030 3.970 5 C -0.102 4.102 6 N 0.043 4.957 7 O -0.168 6.168 8 O -0.175 6.175 9 C 0.008 3.992 10 C -0.191 4.191 11 C 0.263 3.737 12 O -0.285 6.285 13 C 0.202 3.798 14 H 0.059 0.941 15 C -0.545 4.545 16 H 0.093 0.907 17 C 0.092 3.908 18 N -0.862 5.862 19 Si 0.849 3.151 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.256 1.256 23 C -0.046 4.046 24 C -0.129 4.129 25 C -0.118 4.118 26 C -0.138 4.138 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.171 0.829 32 H 0.275 0.725 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 -8.180 -2.747 8.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.045 4.045 3 C -0.085 4.085 4 C 0.009 3.991 5 C -0.186 4.186 6 N 0.559 4.441 7 O -0.383 6.383 8 O -0.388 6.388 9 C -0.012 4.012 10 C -0.210 4.210 11 C 0.208 3.792 12 O -0.194 6.194 13 C 0.149 3.851 14 H 0.076 0.924 15 C -0.582 4.582 16 H 0.111 0.889 17 C -0.116 4.116 18 N -0.495 5.495 19 Si 0.676 3.324 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.182 1.182 23 C -0.047 4.047 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.156 4.156 27 C -0.139 4.139 28 C -0.116 4.116 29 H 0.180 0.820 30 H 0.177 0.823 31 H 0.188 0.812 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.354 -7.506 -3.237 8.835 hybrid contribution 1.511 -0.098 -0.573 1.619 sum -1.843 -7.604 -3.811 8.703 Atomic orbital electron populations 1.81206 1.11511 1.07918 1.07729 1.24850 0.91729 0.93945 0.94026 1.14906 0.85440 1.04587 1.03579 1.20595 0.91139 0.93575 0.93821 1.20557 0.91774 1.04278 1.02013 1.43411 1.01134 0.99608 0.99961 1.94531 0.95515 1.72960 1.75275 1.94517 1.70311 1.37739 1.36196 1.21011 1.02193 0.88890 0.89111 1.21572 0.92880 1.02891 1.03684 1.19270 0.90581 0.83816 0.85491 1.86060 1.38431 1.52178 1.42752 1.19964 0.88870 0.92760 0.83523 0.92358 1.21130 1.10527 1.07154 1.19368 0.88898 1.24851 0.96594 0.94486 0.95625 1.69840 1.24066 1.14329 1.41306 0.87364 0.80912 0.80543 0.83606 1.18481 1.20102 1.18177 1.20022 0.94120 0.97250 0.93305 1.20861 0.99422 1.02297 0.92120 1.20937 0.94180 1.00428 0.98078 1.20969 0.95265 1.02325 0.97027 1.21091 0.99535 1.00419 0.92852 1.20900 0.93412 0.98532 0.98766 0.81960 0.82336 0.81168 0.91444 0.87064 0.86582 0.86724 0.86600 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.81 18.54 41.84 0.78 -6.04 16 2 C 0.27 4.09 14.87 -22.47 -0.33 3.76 16 3 C -0.08 -1.11 5.75 -106.70 -0.61 -1.72 16 4 C 0.03 0.37 9.26 -39.18 -0.36 0.00 16 5 C -0.10 -1.33 6.84 -80.01 -0.55 -1.87 16 6 N 0.04 0.61 4.45 33.93 0.15 0.76 16 7 O -0.17 -2.52 18.43 -29.46 -0.54 -3.06 16 8 O -0.17 -2.56 18.43 -29.46 -0.54 -3.10 16 9 C 0.01 0.10 9.54 -39.53 -0.38 -0.28 16 10 C -0.19 -2.81 8.69 -39.48 -0.34 -3.16 16 11 C 0.26 4.13 6.60 -38.71 -0.26 3.88 16 12 O -0.29 -5.22 8.39 -18.83 -0.16 -5.38 16 13 C 0.20 3.98 1.57 -29.03 -0.05 3.93 16 14 H 0.06 1.09 3.45 -51.93 -0.18 0.91 16 15 C -0.55 -12.68 8.23 -34.44 -0.28 -12.96 16 16 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 17 C 0.09 2.20 5.47 -17.82 -0.10 2.11 16 18 N -0.86 -22.51 13.96 55.43 0.77 -21.74 16 19 Si 0.85 17.06 23.47 -169.99 -3.99 13.07 16 20 H -0.26 -5.20 6.83 56.52 0.39 -4.82 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.26 -4.55 5.87 56.52 0.33 -4.22 16 23 C -0.05 -0.89 4.92 -104.62 -0.51 -1.41 16 24 C -0.13 -2.33 8.65 -39.59 -0.34 -2.67 16 25 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 26 C -0.14 -2.04 10.05 -39.58 -0.40 -2.43 16 27 C -0.12 -1.91 10.05 -39.58 -0.40 -2.30 16 28 C -0.10 -1.79 9.35 -39.58 -0.37 -2.16 16 29 H 0.16 1.62 7.59 -52.49 -0.40 1.22 16 30 H 0.16 1.73 7.59 -52.48 -0.40 1.34 16 31 H 0.17 2.71 4.92 -52.49 -0.26 2.45 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.11 1.95 4.88 -52.49 -0.26 1.70 16 34 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.23 7.65 -52.49 -0.40 1.83 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -26.24 331.98 -7.02 -33.26 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -2.80 Total: 6.76 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -5.68 Total: -19.53 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: 1.70 Total: -27.01 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.24 Total: -11.54 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -3.99 Total: 13.07 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.24 -7.02 -33.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227313002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.125 kcal (2) G-P(sol) polarization free energy of solvation -26.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds