Wall clock time and date at job start Tue Mar 31 2020 14:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39708 * 120.19603 * 313.50626 * 3 2 1 5 5 C 1.37823 * 119.89986 * 180.30104 * 4 3 2 6 6 N 1.48007 * 119.84816 * 179.70007 * 5 4 3 7 7 O 1.21802 * 119.99738 * 180.02562 * 6 5 4 8 8 O 1.21794 * 120.00433 * 0.02562 * 6 5 4 9 9 C 1.38505 * 120.29775 * 359.71883 * 5 4 3 10 10 C 1.38108 * 120.39480 * 0.02562 * 9 5 4 11 11 C 1.38647 * 120.08726 * 0.02562 * 10 9 5 12 12 O 1.35708 * 120.14914 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99592 * 5.76402 * 12 11 10 14 14 H 1.09001 * 109.46995 * 35.37073 * 13 12 11 15 15 C 1.50697 * 109.47245 * 275.36531 * 13 12 11 16 16 H 1.08004 * 120.00192 * 334.72494 * 15 13 12 17 17 C 1.37876 * 119.99797 * 154.72155 * 15 13 12 18 18 N 1.31519 * 119.99826 * 174.65652 * 17 15 13 19 19 Si 1.86798 * 120.00074 * 354.66047 * 17 15 13 20 20 H 1.48505 * 109.46977 * 94.75412 * 19 17 15 21 21 H 1.48503 * 109.47392 * 214.74695 * 19 17 15 22 22 H 1.48497 * 109.47382 * 334.75378 * 19 17 15 23 23 C 1.50708 * 109.46791 * 155.36481 * 13 12 11 24 24 C 1.38228 * 120.00067 * 215.64909 * 23 13 12 25 25 C 1.38229 * 120.00014 * 179.97438 * 24 23 13 26 26 C 1.38233 * 120.00383 * 0.02562 * 25 24 23 27 27 C 1.38234 * 119.99595 * 0.06665 * 26 25 24 28 28 C 1.38237 * 119.99573 * 35.63095 * 23 13 12 29 29 H 1.07999 * 120.05037 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.80715 * 180.02562 * 9 5 4 31 31 H 1.07992 * 119.95654 * 179.97438 * 10 9 5 32 32 H 0.97002 * 119.99986 * 180.02562 * 18 17 15 33 33 H 1.08001 * 120.00035 * 359.97438 * 24 23 13 34 34 H 1.08004 * 119.99829 * 179.72126 * 25 24 23 35 35 H 1.07994 * 120.00529 * 179.97438 * 26 25 24 36 36 H 1.07997 * 120.00293 * 180.02562 * 27 26 25 37 37 H 1.07996 * 120.00402 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2711 -0.8303 0.8758 5 6 4.6493 -0.8203 0.8750 6 7 5.3929 -1.6962 1.8079 7 8 6.6109 -1.6891 1.8098 8 8 4.7870 -2.4241 2.5737 9 6 5.3415 0.0061 0.0053 10 6 4.6589 0.8286 -0.8693 11 6 3.2725 0.8322 -0.8814 12 8 2.6005 1.6404 -1.7399 13 6 3.3804 2.3681 -2.6908 14 1 4.2279 1.7599 -3.0071 15 6 3.8830 3.6408 -2.0596 16 1 3.3448 4.0835 -1.2344 17 6 5.0299 4.2401 -2.5353 18 7 5.4110 5.4041 -2.0561 19 14 6.0425 3.3989 -3.8607 20 1 5.6387 3.9140 -5.1937 21 1 7.4832 3.6810 -3.6368 22 1 5.8105 1.9332 -3.8053 23 6 2.5284 2.7034 -3.8879 24 6 3.0849 2.7069 -5.1532 25 6 2.3033 3.0139 -6.2512 26 6 0.9653 3.3180 -6.0839 27 6 0.4092 3.3164 -4.8183 28 6 1.1902 3.0071 -3.7204 29 1 2.7354 -1.4764 1.5556 30 1 6.4215 0.0073 0.0111 31 1 5.2057 1.4704 -1.5440 32 1 6.2177 5.8259 -2.3910 33 1 4.1304 2.4697 -5.2839 34 1 2.7392 3.0211 -7.2393 35 1 0.3547 3.5583 -6.9416 36 1 -0.6363 3.5535 -4.6875 37 1 0.7553 3.0037 -2.7320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227313002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:31 Heat of formation + Delta-G solvation = 35.712862 kcal Electronic energy + Delta-G solvation = -26150.763099 eV Core-core repulsion = 22247.841294 eV Total energy + Delta-G solvation = -3902.921805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.22805 -41.77633 -40.17738 -38.77942 -37.68941 -37.56742 -35.25555 -33.41756 -32.81564 -32.13139 -31.73259 -29.34271 -27.36283 -25.50647 -25.18286 -23.70687 -23.37124 -22.00816 -21.27450 -19.76997 -19.46505 -19.31915 -18.56329 -18.49721 -17.97562 -17.20095 -16.90366 -16.27479 -15.99704 -15.85345 -15.51092 -14.98619 -14.86556 -14.72046 -14.46609 -14.43985 -14.26319 -13.99173 -13.88834 -13.57206 -13.45358 -12.98065 -12.73819 -12.66333 -12.50908 -12.28019 -12.22158 -12.04618 -11.98994 -11.67042 -11.50285 -10.92856 -10.59162 -9.89220 -9.80497 -9.55514 -8.48079 -6.60275 -1.17757 -0.62842 0.25552 0.32094 0.45660 0.51658 1.22090 1.27099 1.36895 1.44288 1.58226 1.88458 2.15951 2.38378 2.51877 2.78505 3.00191 3.31146 3.50056 3.54301 3.70836 3.91467 4.02623 4.12124 4.20322 4.23655 4.31662 4.40194 4.53256 4.65150 4.73450 4.78328 4.97278 5.01657 5.14445 5.17815 5.31579 5.55841 5.60982 5.66152 5.83398 6.11297 6.17468 6.27895 6.51370 6.56800 7.05635 8.66984 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.004592 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.425344 B = 6095.565730 C = 7586.095632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.284 3.716 3 C -0.076 4.076 4 C 0.052 3.948 5 C -0.100 4.100 6 N 0.043 4.957 7 O -0.178 6.178 8 O -0.173 6.173 9 C 0.025 3.975 10 C -0.200 4.200 11 C 0.243 3.757 12 O -0.301 6.301 13 C 0.213 3.787 14 H 0.071 0.929 15 C -0.540 4.540 16 H 0.042 0.958 17 C 0.045 3.955 18 N -0.919 5.919 19 Si 0.899 3.101 20 H -0.254 1.254 21 H -0.277 1.277 22 H -0.220 1.220 23 C -0.075 4.075 24 C -0.147 4.147 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.121 4.121 29 H 0.189 0.811 30 H 0.181 0.819 31 H 0.160 0.840 32 H 0.275 0.725 33 H 0.115 0.885 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 -10.081 -4.490 11.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.031 4.031 3 C -0.081 4.081 4 C 0.031 3.969 5 C -0.184 4.184 6 N 0.558 4.442 7 O -0.391 6.391 8 O -0.387 6.387 9 C 0.006 3.994 10 C -0.219 4.219 11 C 0.190 3.810 12 O -0.211 6.211 13 C 0.159 3.841 14 H 0.088 0.912 15 C -0.577 4.577 16 H 0.061 0.939 17 C -0.158 4.158 18 N -0.555 5.555 19 Si 0.722 3.278 20 H -0.178 1.178 21 H -0.203 1.203 22 H -0.144 1.144 23 C -0.075 4.075 24 C -0.165 4.165 25 C -0.136 4.136 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.139 4.139 29 H 0.207 0.793 30 H 0.198 0.802 31 H 0.177 0.823 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.266 -9.440 -4.973 11.159 hybrid contribution 1.370 0.454 0.058 1.444 sum -1.896 -8.987 -4.915 10.417 Atomic orbital electron populations 1.81213 1.12349 1.08936 1.08721 1.24966 0.91861 0.93094 0.93187 1.14827 0.84742 1.04816 1.03750 1.20775 0.90845 0.92470 0.92822 1.20584 0.91998 1.04055 1.01761 1.43488 1.01109 0.99590 0.99965 1.94542 0.95723 1.73260 1.75556 1.94520 1.70235 1.37733 1.36214 1.21155 1.03211 0.87400 0.87658 1.21437 0.92355 1.03607 1.04484 1.19545 0.91294 0.84274 0.85874 1.86024 1.38556 1.53030 1.43460 1.19714 0.89578 0.91088 0.83733 0.91199 1.21112 1.10097 1.08357 1.18163 0.93949 1.25593 0.97626 0.94744 0.97789 1.69991 1.25076 1.16570 1.43879 0.86554 0.78806 0.81756 0.80674 1.17847 1.20289 1.14388 1.20099 0.94712 0.98976 0.93755 1.21072 1.00028 1.03066 0.92298 1.21380 0.94471 0.98915 0.98829 1.21435 0.95381 1.00241 0.97665 1.21426 1.00584 0.99412 0.92667 1.20951 0.93768 1.00051 0.99135 0.79336 0.80199 0.82292 0.91550 0.86698 0.83297 0.82858 0.84155 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.54 18.54 19.00 0.35 -14.19 16 2 C 0.28 8.50 14.87 88.33 1.31 9.81 16 3 C -0.08 -2.04 5.75 -21.21 -0.12 -2.16 16 4 C 0.05 1.14 9.26 22.53 0.21 1.35 16 5 C -0.10 -2.36 6.84 36.34 0.25 -2.11 16 6 N 0.04 1.13 4.45 -46.55 -0.21 0.92 16 7 O -0.18 -4.94 18.43 18.88 0.35 -4.59 16 8 O -0.17 -4.62 18.43 18.89 0.35 -4.27 16 9 C 0.03 0.60 9.54 22.30 0.21 0.81 16 10 C -0.20 -5.75 8.69 22.34 0.19 -5.56 16 11 C 0.24 7.66 6.60 22.84 0.15 7.81 16 12 O -0.30 -11.37 8.39 -90.29 -0.76 -12.13 16 13 C 0.21 8.54 1.57 29.10 0.05 8.58 16 14 H 0.07 2.59 3.45 -2.39 -0.01 2.58 16 15 C -0.54 -26.40 8.23 25.60 0.21 -26.19 16 16 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 17 C 0.05 2.22 5.47 84.65 0.46 2.69 16 18 N -0.92 -50.35 13.96 21.45 0.30 -50.05 16 19 Si 0.90 34.77 23.47 68.60 1.61 36.38 16 20 H -0.25 -9.54 6.83 99.48 0.68 -8.86 16 21 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.22 -7.13 5.87 99.48 0.58 -6.54 16 23 C -0.07 -2.89 4.92 -19.86 -0.10 -2.99 16 24 C -0.15 -5.05 8.65 22.27 0.19 -4.85 16 25 C -0.12 -3.33 10.05 22.27 0.22 -3.11 16 26 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 27 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 28 C -0.12 -4.46 9.35 22.27 0.21 -4.25 16 29 H 0.19 3.17 7.59 -2.91 -0.02 3.15 16 30 H 0.18 3.49 7.59 -2.91 -0.02 3.46 16 31 H 0.16 5.01 4.92 -2.91 -0.01 5.00 16 32 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.12 3.77 4.88 -2.91 -0.01 3.76 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.11 4.09 7.65 -2.91 -0.02 4.07 16 Total: -1.00 -60.00 331.98 6.90 -53.11 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 1.00 Total: 21.60 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 3.90 Total: -26.78 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.44 Total: -63.31 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.06 Total: -20.99 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 1.61 Total: 36.38 kcal Total: -60.00 6.90 -53.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227313002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.818 kcal (2) G-P(sol) polarization free energy of solvation -60.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds