Wall clock time and date at job start Tue Mar 31 2020 14:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00246 * 2 1 4 4 H 1.48508 * 109.47031 * 240.00330 * 3 2 1 5 5 H 1.48502 * 109.46926 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47181 * 120.00268 * 3 2 1 7 7 C 1.37886 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99872 * 186.14416 * 7 2 1 9 9 C 1.50704 * 119.99794 * 6.14383 * 7 2 1 10 10 H 1.08996 * 109.46678 * 185.54605 * 9 7 2 11 11 O 1.42898 * 109.47172 * 305.54340 * 9 7 2 12 12 C 1.35924 * 117.00271 * 281.26381 * 11 9 7 13 13 C 1.39090 * 120.85397 * 3.62378 * 12 11 9 14 14 N 1.32291 * 119.03007 * 179.72351 * 13 12 11 15 15 C 1.31787 * 120.87790 * 0.57113 * 14 13 12 16 16 C 1.50701 * 119.05221 * 179.72845 * 15 14 13 17 17 F 1.39899 * 109.46986 * 284.97599 * 16 15 14 18 18 F 1.39899 * 109.47411 * 44.97973 * 16 15 14 19 19 F 1.39906 * 109.46647 * 164.97830 * 16 15 14 20 20 N 1.31780 * 121.88814 * 359.70295 * 15 14 13 21 21 C 1.32290 * 120.87640 * 0.02562 * 20 15 14 22 22 C 1.50699 * 109.47181 * 65.54714 * 9 7 2 23 23 C 1.38234 * 119.99699 * 267.41073 * 22 9 7 24 24 C 1.38233 * 119.99938 * 180.02562 * 23 22 9 25 25 C 1.38239 * 119.99801 * 359.95105 * 24 23 22 26 26 C 1.38230 * 120.00330 * 0.02562 * 25 24 23 27 27 C 1.38233 * 120.00116 * 87.38376 * 22 9 7 28 28 H 0.97005 * 119.99968 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.48413 * 0.02562 * 13 12 11 30 30 H 1.08009 * 120.47883 * 179.97438 * 21 20 15 31 31 H 1.08006 * 120.00526 * 359.97438 * 23 22 9 32 32 H 1.08000 * 120.00351 * 179.97438 * 24 23 22 33 33 H 1.08004 * 120.00079 * 179.72516 * 25 24 23 34 34 H 1.07997 * 120.00834 * 179.97438 * 26 25 24 35 35 H 1.08000 * 119.99773 * 0.02562 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0798 -1.1969 0.0996 9 6 1.2574 -2.4954 -0.1408 10 1 1.9514 -3.3274 -0.0214 11 8 0.2434 -2.5731 0.8630 12 6 0.6410 -2.9165 2.1166 13 6 1.9872 -3.1045 2.4116 14 7 2.3344 -3.4329 3.6452 15 6 1.4237 -3.5926 4.5843 16 6 1.8646 -3.9728 5.9742 17 9 2.2268 -5.3240 5.9953 18 9 2.9629 -3.1898 6.3457 19 9 0.8135 -3.7577 6.8721 20 7 0.1386 -3.4288 4.3428 21 6 -0.2883 -3.0951 3.1360 22 6 0.6204 -2.5644 -1.5048 23 6 -0.6781 -2.1255 -1.6842 24 6 -1.2626 -2.1893 -2.9352 25 6 -0.5483 -2.6911 -4.0071 26 6 0.7503 -3.1296 -3.8278 27 6 1.3347 -3.0662 -2.5766 28 1 -0.4850 0.8401 0.0004 29 1 2.7385 -2.9795 1.6459 30 1 -1.3432 -2.9629 2.9451 31 1 -1.2362 -1.7334 -0.8467 32 1 -2.2772 -1.8467 -3.0753 33 1 -1.0065 -2.7451 -4.9836 34 1 1.3083 -3.5220 -4.6651 35 1 2.3492 -3.4091 -2.4364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227960934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:21 Heat of formation + Delta-G solvation = -106.696463 kcal Electronic energy + Delta-G solvation = -26895.976650 eV Core-core repulsion = 22445.022773 eV Total energy + Delta-G solvation = -4450.953877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.93932 -47.46868 -47.43216 -40.89599 -38.81740 -37.44614 -33.63684 -33.32908 -31.49077 -30.66616 -30.02395 -27.46116 -26.35973 -24.52958 -23.54277 -22.47291 -21.69812 -20.55102 -18.70401 -18.46678 -18.37193 -17.91902 -17.19279 -16.40134 -15.92075 -15.27888 -14.99829 -14.78452 -14.33300 -14.26427 -14.23187 -13.95050 -13.86633 -13.59338 -13.58405 -13.55623 -13.50257 -12.94757 -12.64069 -12.56520 -12.12408 -11.94065 -11.81567 -11.20717 -11.16132 -10.89182 -10.77933 -10.64831 -10.33279 -9.96619 -9.75686 -9.06570 -8.94315 -8.19801 -8.07122 -7.82034 -6.45564 -4.69762 1.11677 1.29577 2.11879 2.23714 2.56513 3.08261 3.14067 3.16975 3.60052 3.79381 3.84404 3.96462 4.07157 4.59802 4.62015 4.73921 4.84405 4.90657 5.11698 5.36309 5.54743 5.61797 5.73306 5.91481 6.04808 6.19447 6.26415 6.46273 6.50460 6.71140 6.88759 7.04170 7.16403 7.29760 7.36310 7.49547 7.56521 7.83605 7.96500 8.08841 8.41936 9.06610 10.51078 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015533 B = 0.003928 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.125520 B = 7126.634365 C = 8016.009117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.089 3.911 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.233 3.767 10 H 0.040 0.960 11 O -0.262 6.262 12 C 0.123 3.877 13 C 0.066 3.934 14 N -0.445 5.445 15 C 0.142 3.858 16 C 0.555 3.445 17 F -0.172 7.172 18 F -0.167 7.167 19 F -0.163 7.163 20 N -0.444 5.444 21 C 0.093 3.907 22 C -0.036 4.036 23 C -0.066 4.066 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.137 4.137 27 C -0.122 4.122 28 H 0.270 0.730 29 H 0.188 0.812 30 H 0.181 0.819 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -5.735 1.288 5.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.121 4.121 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.601 4.601 8 H 0.092 0.908 9 C 0.180 3.820 10 H 0.058 0.942 11 O -0.169 6.169 12 C 0.067 3.933 13 C -0.103 4.103 14 N -0.160 5.160 15 C -0.126 4.126 16 C 0.499 3.501 17 F -0.154 7.154 18 F -0.148 7.148 19 F -0.144 7.144 20 N -0.158 5.158 21 C -0.076 4.076 22 C -0.037 4.037 23 C -0.084 4.084 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.140 4.140 28 H 0.080 0.920 29 H 0.204 0.796 30 H 0.198 0.802 31 H 0.163 0.837 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.539 -5.817 2.117 6.214 hybrid contribution 0.509 1.439 -0.926 1.785 sum -0.031 -4.378 1.191 4.537 Atomic orbital electron populations 1.69920 1.06006 1.27700 1.43318 1.25000 0.94898 0.99642 0.92608 0.86582 0.79944 0.82155 0.79208 1.19628 1.20781 1.19740 1.21317 0.94060 0.89874 1.54898 0.90830 1.19181 0.84618 0.96603 0.81611 0.94204 1.86343 1.39865 1.77475 1.13205 1.21006 0.94450 0.88595 0.89273 1.23601 0.95403 0.98117 0.93158 1.67680 1.38140 1.09144 1.01027 1.21877 0.87405 1.08614 0.94666 1.17040 0.74800 0.74668 0.83633 1.93208 1.91880 1.33508 1.96763 1.93218 1.54767 1.74546 1.92269 1.93214 1.57326 1.94490 1.69399 1.67783 1.16173 1.09780 1.22095 1.22586 1.00739 0.98855 0.85424 1.19719 0.93765 0.95554 0.94663 1.21357 0.94990 0.94754 0.97297 1.21132 0.99502 1.01395 0.93742 1.20899 0.95193 1.01882 0.98146 1.20808 0.95566 1.02528 0.96612 1.20729 0.99303 1.01273 0.92688 0.92009 0.79554 0.80243 0.83654 0.87440 0.87654 0.87341 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.94 9.63 55.43 0.53 -19.41 16 2 C 0.09 2.09 5.23 -17.82 -0.09 2.00 16 3 Si 0.89 19.11 29.54 -169.99 -5.02 14.09 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.57 -12.85 7.50 -34.44 -0.26 -13.11 16 8 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.23 4.81 2.11 -29.03 -0.06 4.74 16 10 H 0.04 0.75 6.65 -51.93 -0.35 0.41 16 11 O -0.26 -5.39 7.68 -19.50 -0.15 -5.54 16 12 C 0.12 2.34 6.58 -38.95 -0.26 2.08 16 13 C 0.07 1.23 9.87 -17.04 -0.17 1.06 16 14 N -0.45 -8.41 10.20 -10.62 -0.11 -8.52 16 15 C 0.14 2.61 7.09 -157.21 -1.11 1.49 16 16 C 0.56 9.10 3.49 36.01 0.13 9.23 16 17 F -0.17 -2.70 17.30 2.25 0.04 -2.66 16 18 F -0.17 -2.72 17.20 2.25 0.04 -2.68 16 19 F -0.16 -2.58 16.87 2.25 0.04 -2.55 16 20 N -0.44 -8.03 9.83 -10.61 -0.10 -8.14 16 21 C 0.09 1.62 11.27 -17.04 -0.19 1.42 16 22 C -0.04 -0.74 4.81 -104.63 -0.50 -1.24 16 23 C -0.07 -1.33 8.00 -39.58 -0.32 -1.64 16 24 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 25 C -0.14 -2.34 10.05 -39.58 -0.40 -2.74 16 26 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 27 C -0.12 -2.21 9.71 -39.58 -0.38 -2.60 16 28 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 29 H 0.19 3.34 5.76 -52.49 -0.30 3.04 16 30 H 0.18 2.66 8.06 -52.48 -0.42 2.24 16 31 H 0.15 3.16 6.12 -52.48 -0.32 2.84 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -24.59 320.31 -6.95 -31.54 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -2.63 Total: 3.86 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -4.41 Total: -4.82 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.32 Total: -36.07 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.15 Total: -5.54 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.12 Total: -7.89 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -24.59 -6.95 -31.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227960934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.153 kcal (2) G-P(sol) polarization free energy of solvation -24.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds