Wall clock time and date at job start Tue Mar 31 2020 14:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00246 * 2 1 4 4 H 1.48508 * 109.47031 * 240.00330 * 3 2 1 5 5 H 1.48502 * 109.46926 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47181 * 120.00268 * 3 2 1 7 7 C 1.37886 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99872 * 186.14416 * 7 2 1 9 9 C 1.50704 * 119.99794 * 6.14383 * 7 2 1 10 10 H 1.08996 * 109.46678 * 185.54605 * 9 7 2 11 11 O 1.42898 * 109.47172 * 305.54340 * 9 7 2 12 12 C 1.35924 * 117.00271 * 281.26381 * 11 9 7 13 13 C 1.39090 * 120.85397 * 3.62378 * 12 11 9 14 14 N 1.32291 * 119.03007 * 179.72351 * 13 12 11 15 15 C 1.31787 * 120.87790 * 0.57113 * 14 13 12 16 16 C 1.50701 * 119.05221 * 179.72845 * 15 14 13 17 17 F 1.39899 * 109.46986 * 284.97599 * 16 15 14 18 18 F 1.39899 * 109.47411 * 44.97973 * 16 15 14 19 19 F 1.39906 * 109.46647 * 164.97830 * 16 15 14 20 20 N 1.31780 * 121.88814 * 359.70295 * 15 14 13 21 21 C 1.32290 * 120.87640 * 0.02562 * 20 15 14 22 22 C 1.50699 * 109.47181 * 65.54714 * 9 7 2 23 23 C 1.38234 * 119.99699 * 267.41073 * 22 9 7 24 24 C 1.38233 * 119.99938 * 180.02562 * 23 22 9 25 25 C 1.38239 * 119.99801 * 359.95105 * 24 23 22 26 26 C 1.38230 * 120.00330 * 0.02562 * 25 24 23 27 27 C 1.38233 * 120.00116 * 87.38376 * 22 9 7 28 28 H 0.97005 * 119.99968 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.48413 * 0.02562 * 13 12 11 30 30 H 1.08009 * 120.47883 * 179.97438 * 21 20 15 31 31 H 1.08006 * 120.00526 * 359.97438 * 23 22 9 32 32 H 1.08000 * 120.00351 * 179.97438 * 24 23 22 33 33 H 1.08004 * 120.00079 * 179.72516 * 25 24 23 34 34 H 1.07997 * 120.00834 * 179.97438 * 26 25 24 35 35 H 1.08000 * 119.99773 * 0.02562 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0798 -1.1969 0.0996 9 6 1.2574 -2.4954 -0.1408 10 1 1.9514 -3.3274 -0.0214 11 8 0.2434 -2.5731 0.8630 12 6 0.6410 -2.9165 2.1166 13 6 1.9872 -3.1045 2.4116 14 7 2.3344 -3.4329 3.6452 15 6 1.4237 -3.5926 4.5843 16 6 1.8646 -3.9728 5.9742 17 9 2.2268 -5.3240 5.9953 18 9 2.9629 -3.1898 6.3457 19 9 0.8135 -3.7577 6.8721 20 7 0.1386 -3.4288 4.3428 21 6 -0.2883 -3.0951 3.1360 22 6 0.6204 -2.5644 -1.5048 23 6 -0.6781 -2.1255 -1.6842 24 6 -1.2626 -2.1893 -2.9352 25 6 -0.5483 -2.6911 -4.0071 26 6 0.7503 -3.1296 -3.8278 27 6 1.3347 -3.0662 -2.5766 28 1 -0.4850 0.8401 0.0004 29 1 2.7385 -2.9795 1.6459 30 1 -1.3432 -2.9629 2.9451 31 1 -1.2362 -1.7334 -0.8467 32 1 -2.2772 -1.8467 -3.0753 33 1 -1.0065 -2.7451 -4.9836 34 1 1.3083 -3.5220 -4.6651 35 1 2.3492 -3.4091 -2.4364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227960934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:20 Heat of formation + Delta-G solvation = -117.151060 kcal Electronic energy + Delta-G solvation = -26896.429995 eV Core-core repulsion = 22445.022773 eV Total energy + Delta-G solvation = -4451.407222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.24790 -48.76863 -48.73673 -42.35897 -40.26399 -38.89142 -35.16797 -34.90670 -33.00478 -32.10928 -31.39561 -29.01988 -27.78337 -26.03746 -25.06829 -23.90615 -23.07045 -21.98650 -20.07701 -19.84029 -19.68246 -19.50300 -18.60082 -17.96559 -17.29327 -16.95862 -16.38197 -16.30856 -15.71192 -15.62462 -15.55037 -15.38771 -15.16436 -15.08113 -14.97277 -14.89005 -14.86903 -14.37009 -14.03560 -13.95360 -13.69446 -13.40221 -13.34442 -12.86950 -12.68845 -12.51878 -12.27006 -12.10740 -11.81465 -11.48124 -11.29263 -10.77398 -10.45886 -9.64582 -9.49174 -9.27405 -8.19046 -6.46357 -0.35661 -0.15629 0.73758 0.86300 1.19993 1.37086 1.41250 1.44409 2.21736 2.31451 2.36055 2.40915 2.56908 3.07064 3.23377 3.27369 3.32399 3.50758 3.70081 3.90346 4.24846 4.33292 4.41755 4.51095 4.63404 4.78893 4.89031 5.04128 5.09617 5.35115 5.50329 5.55360 5.61764 5.78469 5.81519 5.95078 6.11730 6.36628 6.44150 6.61736 6.75242 7.30326 8.74347 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015533 B = 0.003928 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.125520 B = 7126.634365 C = 8016.009117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.055 3.945 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.233 3.767 10 H 0.050 0.950 11 O -0.272 6.272 12 C 0.107 3.893 13 C 0.063 3.937 14 N -0.455 5.455 15 C 0.136 3.864 16 C 0.562 3.438 17 F -0.166 7.166 18 F -0.166 7.166 19 F -0.158 7.158 20 N -0.448 5.448 21 C 0.102 3.898 22 C -0.061 4.061 23 C -0.085 4.085 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.134 4.134 27 C -0.133 4.133 28 H 0.265 0.735 29 H 0.190 0.810 30 H 0.204 0.796 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 -6.309 0.284 6.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.153 4.153 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.609 4.609 8 H 0.088 0.912 9 C 0.180 3.820 10 H 0.068 0.932 11 O -0.179 6.179 12 C 0.051 3.949 13 C -0.104 4.104 14 N -0.170 5.170 15 C -0.132 4.132 16 C 0.505 3.495 17 F -0.147 7.147 18 F -0.147 7.147 19 F -0.139 7.139 20 N -0.162 5.162 21 C -0.067 4.067 22 C -0.062 4.062 23 C -0.104 4.104 24 C -0.166 4.166 25 C -0.157 4.157 26 C -0.152 4.152 27 C -0.151 4.151 28 H 0.075 0.925 29 H 0.207 0.793 30 H 0.221 0.779 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.536 -6.396 1.116 6.515 hybrid contribution 0.500 1.546 -0.617 1.738 sum -0.036 -4.851 0.499 4.876 Atomic orbital electron populations 1.70028 1.06427 1.27466 1.44492 1.25467 0.95440 1.01372 0.93044 0.85970 0.78932 0.80280 0.78680 1.19650 1.21062 1.20331 1.21513 0.94041 0.90930 1.54423 0.91229 1.19164 0.84830 0.95937 0.82089 0.93219 1.86314 1.39733 1.78145 1.13709 1.21191 0.94962 0.89508 0.89244 1.23655 0.95517 0.97962 0.93301 1.67717 1.38400 1.09721 1.01157 1.22303 0.87569 1.07940 0.95392 1.16820 0.74879 0.74868 0.82898 1.93221 1.91820 1.33016 1.96689 1.93223 1.54705 1.74596 1.92163 1.93227 1.57149 1.94490 1.69060 1.67886 1.16043 1.10148 1.22164 1.22986 1.01664 0.97263 0.84790 1.19838 0.94314 0.97117 0.94928 1.21233 0.95283 0.96110 0.97773 1.21379 1.00524 1.01344 0.93318 1.21306 0.95098 1.00210 0.99092 1.21229 0.95821 1.01344 0.96827 1.20997 0.99940 1.01212 0.92987 0.92535 0.79300 0.77887 0.86021 0.85747 0.84253 0.83999 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.14 9.63 21.45 0.21 -40.93 16 2 C 0.05 2.60 5.23 84.66 0.44 3.04 16 3 Si 0.93 39.35 29.54 68.60 2.03 41.37 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.57 -26.18 7.50 25.60 0.19 -25.98 16 8 H 0.07 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.23 9.68 2.11 29.10 0.06 9.74 16 10 H 0.05 1.89 6.65 -2.39 -0.02 1.88 16 11 O -0.27 -11.30 7.68 -92.70 -0.71 -12.01 16 12 C 0.11 4.04 6.58 22.68 0.15 4.19 16 13 C 0.06 2.36 9.87 84.83 0.84 3.20 16 14 N -0.46 -16.97 10.20 -187.50 -1.91 -18.88 16 15 C 0.14 4.87 7.09 138.76 0.98 5.85 16 16 C 0.56 17.76 3.49 71.24 0.25 18.01 16 17 F -0.17 -4.98 17.30 44.97 0.78 -4.20 16 18 F -0.17 -5.22 17.20 44.97 0.77 -4.45 16 19 F -0.16 -4.79 16.87 44.97 0.76 -4.03 16 20 N -0.45 -15.76 9.83 -187.49 -1.84 -17.61 16 21 C 0.10 3.48 11.27 84.83 0.96 4.43 16 22 C -0.06 -2.48 4.81 -19.87 -0.10 -2.57 16 23 C -0.09 -3.46 8.00 22.27 0.18 -3.28 16 24 C -0.15 -5.04 10.05 22.27 0.22 -4.82 16 25 C -0.14 -4.13 10.05 22.27 0.22 -3.91 16 26 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 27 C -0.13 -4.65 9.71 22.27 0.22 -4.43 16 28 H 0.27 12.59 8.31 -92.70 -0.77 11.82 16 29 H 0.19 6.83 5.76 -2.91 -0.02 6.82 16 30 H 0.20 5.82 8.06 -2.91 -0.02 5.79 16 31 H 0.12 5.44 6.12 -2.91 -0.02 5.43 16 32 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 34 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -51.42 320.31 6.08 -45.35 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.16 Total: 15.73 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 4.84 Total: -0.34 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.55 Total: -77.42 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.71 Total: -12.01 kcal Atomic # 9 Polarization: -14.99 SS G_CDS: 2.31 Total: -12.68 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Total: -51.42 6.08 -45.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227960934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.804 kcal (2) G-P(sol) polarization free energy of solvation -51.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds