Wall clock time and date at job start Tue Mar 31 2020 14:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48504 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47493 * 300.00272 * 3 2 1 6 6 H 1.48501 * 109.47030 * 60.00445 * 3 2 1 7 7 C 1.37878 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99797 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47084 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.46771 * 60.00577 * 9 7 2 12 12 C 1.35927 * 117.00256 * 84.52110 * 11 9 7 13 13 C 1.39088 * 120.85038 * 354.34850 * 12 11 9 14 14 N 1.32295 * 119.02947 * 179.71651 * 13 12 11 15 15 C 1.31793 * 120.87586 * 0.57842 * 14 13 12 16 16 C 1.50701 * 119.05488 * 179.72178 * 15 14 13 17 17 F 1.39899 * 109.46973 * 284.97504 * 16 15 14 18 18 F 1.39901 * 109.46968 * 44.97737 * 16 15 14 19 19 F 1.39898 * 109.46973 * 164.97544 * 16 15 14 20 20 N 1.31782 * 121.88677 * 359.69770 * 15 14 13 21 21 C 1.32291 * 120.87978 * 0.02562 * 20 15 14 22 22 C 1.50699 * 109.47455 * 300.00155 * 9 7 2 23 23 C 1.38239 * 119.99675 * 84.72716 * 22 9 7 24 24 C 1.38238 * 119.99710 * 179.81296 * 23 22 9 25 25 C 1.38233 * 119.99966 * 0.39336 * 24 23 22 26 26 C 1.38237 * 119.99956 * 359.85771 * 25 24 23 27 27 C 1.38229 * 120.00160 * 359.95816 * 26 25 24 28 28 H 0.97004 * 119.99830 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.49062 * 0.02562 * 13 12 11 30 30 H 1.08005 * 120.48123 * 180.02562 * 21 20 15 31 31 H 1.08005 * 120.00209 * 359.97438 * 23 22 9 32 32 H 1.07999 * 119.99619 * 180.23193 * 24 23 22 33 33 H 1.07999 * 119.99587 * 179.83332 * 25 24 23 34 34 H 1.07995 * 119.99624 * 179.97438 * 26 25 24 35 35 H 1.08001 * 120.00137 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 1.9593 -3.3276 -0.0005 11 8 0.4291 -2.5745 -1.1671 12 6 1.0159 -3.0249 -2.3074 13 6 2.3822 -3.2814 -2.3532 14 7 2.9148 -3.7243 -3.4803 15 6 2.1711 -3.9116 -4.5520 16 6 2.8217 -4.4114 -5.8161 17 9 3.5442 -3.3718 -6.4113 18 9 3.6885 -5.4657 -5.5090 19 9 1.8362 -4.8609 -6.7015 20 7 0.8747 -3.6747 -4.5498 21 6 0.2667 -3.2352 -3.4602 22 6 0.3850 -2.5792 1.2302 23 6 -0.8705 -2.0006 1.2307 24 6 -1.6664 -2.0775 2.3584 25 6 -1.2036 -2.7259 3.4881 26 6 0.0539 -3.3000 3.4893 27 6 0.8483 -3.2264 2.3604 28 1 -0.4850 0.8401 0.0004 29 1 2.9984 -3.1261 -1.4800 30 1 -0.7962 -3.0435 -3.4655 31 1 -1.2306 -1.4908 0.3493 32 1 -2.6487 -1.6287 2.3575 33 1 -1.8244 -2.7835 4.3700 34 1 0.4155 -3.8061 4.3720 35 1 1.8309 -3.6746 2.3614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227961239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:24 Heat of formation + Delta-G solvation = -101.798851 kcal Electronic energy + Delta-G solvation = -26857.814526 eV Core-core repulsion = 22407.073026 eV Total energy + Delta-G solvation = -4450.741500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.97629 -47.49810 -47.47634 -40.96100 -38.79270 -37.42298 -33.71006 -33.44835 -31.48578 -30.63991 -29.87903 -27.51431 -26.39837 -24.63645 -23.51585 -22.48529 -21.62175 -20.54533 -18.75587 -18.51523 -18.40525 -17.96258 -17.23455 -16.44665 -15.91501 -15.29188 -15.03843 -14.85163 -14.33097 -14.30157 -14.21558 -13.90606 -13.89995 -13.62916 -13.61627 -13.57454 -13.51506 -12.96215 -12.67330 -12.54537 -12.12541 -11.88486 -11.78759 -11.26174 -11.21334 -10.89586 -10.74964 -10.69601 -10.33247 -9.83359 -9.70552 -9.15824 -9.01951 -8.19260 -8.00362 -7.77231 -6.37680 -4.76267 1.04387 1.22314 2.18680 2.36533 2.51812 3.03379 3.13886 3.16129 3.56309 3.73443 3.79735 3.91219 4.03249 4.57009 4.63267 4.75119 4.79996 4.87639 5.04385 5.29339 5.61097 5.68329 5.79712 5.90953 6.05994 6.17793 6.28571 6.47497 6.58722 6.79625 6.94524 7.04283 7.23919 7.29420 7.40247 7.56919 7.69296 7.94830 7.98706 8.02946 8.39802 9.03108 10.45111 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003899 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.156889 B = 7179.262466 C = 8128.179182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.086 3.914 3 Si 0.899 3.101 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.231 3.769 10 H 0.041 0.959 11 O -0.269 6.269 12 C 0.117 3.883 13 C 0.063 3.937 14 N -0.444 5.444 15 C 0.144 3.856 16 C 0.555 3.445 17 F -0.171 7.171 18 F -0.167 7.167 19 F -0.163 7.163 20 N -0.443 5.443 21 C 0.093 3.907 22 C -0.048 4.048 23 C -0.047 4.047 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.122 4.122 28 H 0.270 0.730 29 H 0.187 0.813 30 H 0.182 0.818 31 H 0.164 0.836 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 -5.664 -2.223 6.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.123 4.123 3 Si 0.726 3.274 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.588 4.588 8 H 0.093 0.907 9 C 0.178 3.822 10 H 0.059 0.941 11 O -0.176 6.176 12 C 0.061 3.939 13 C -0.106 4.106 14 N -0.158 5.158 15 C -0.124 4.124 16 C 0.499 3.501 17 F -0.152 7.152 18 F -0.149 7.149 19 F -0.144 7.144 20 N -0.157 5.157 21 C -0.075 4.075 22 C -0.049 4.049 23 C -0.066 4.066 24 C -0.168 4.168 25 C -0.158 4.158 26 C -0.165 4.165 27 C -0.140 4.140 28 H 0.080 0.920 29 H 0.204 0.796 30 H 0.199 0.801 31 H 0.181 0.819 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.087 -5.805 -3.010 6.540 hybrid contribution 0.383 1.421 0.984 1.771 sum 0.296 -4.384 -2.026 4.839 Atomic orbital electron populations 1.69795 1.06024 1.27087 1.44578 1.25058 0.94935 0.99891 0.92385 0.86399 0.80382 0.82529 0.78135 1.19237 1.20425 1.20361 1.21445 0.93555 0.89757 1.54053 0.90738 1.19257 0.87490 0.96611 0.78825 0.94141 1.86422 1.41369 1.74075 1.15731 1.21092 0.93516 0.88674 0.90623 1.23585 0.92964 0.97772 0.96257 1.67688 1.40003 1.09295 0.98859 1.21908 0.88686 1.07814 0.93992 1.17030 0.75916 0.75330 0.81861 1.93221 1.78644 1.58404 1.84927 1.93213 1.70724 1.57858 1.93062 1.93214 1.61890 1.89264 1.70033 1.67795 1.09798 1.09393 1.28749 1.22636 1.01148 0.98159 0.85583 1.19620 0.94456 0.96117 0.94679 1.21861 0.92686 0.92443 0.99622 1.21165 0.99771 1.01351 0.94538 1.20902 0.96343 1.00574 0.97931 1.20736 0.95234 1.02766 0.97735 1.20744 0.99109 1.00652 0.93541 0.91979 0.79606 0.80124 0.81866 0.87666 0.87910 0.87588 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.75 8.50 55.43 0.47 -19.28 16 2 C 0.09 2.00 5.24 -17.82 -0.09 1.91 16 3 Si 0.90 18.92 29.54 -169.99 -5.02 13.90 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.55 -12.56 8.00 -34.44 -0.28 -12.84 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.23 4.79 2.12 -29.04 -0.06 4.72 16 10 H 0.04 0.77 6.32 -51.93 -0.33 0.44 16 11 O -0.27 -5.50 8.37 -19.51 -0.16 -5.66 16 12 C 0.12 2.17 6.63 -38.95 -0.26 1.92 16 13 C 0.06 1.14 9.97 -17.04 -0.17 0.97 16 14 N -0.44 -8.16 10.20 -10.61 -0.11 -8.27 16 15 C 0.14 2.57 7.09 -157.21 -1.11 1.46 16 16 C 0.56 8.88 3.49 36.01 0.13 9.01 16 17 F -0.17 -2.71 17.30 2.25 0.04 -2.67 16 18 F -0.17 -2.59 17.20 2.25 0.04 -2.55 16 19 F -0.16 -2.50 16.87 2.25 0.04 -2.46 16 20 N -0.44 -7.81 9.83 -10.61 -0.10 -7.91 16 21 C 0.09 1.59 11.27 -17.04 -0.19 1.39 16 22 C -0.05 -0.99 4.80 -104.62 -0.50 -1.50 16 23 C -0.05 -0.98 7.46 -39.58 -0.30 -1.28 16 24 C -0.15 -2.77 10.05 -39.58 -0.40 -3.16 16 25 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 26 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 27 C -0.12 -2.28 9.68 -39.59 -0.38 -2.66 16 28 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 29 H 0.19 3.23 5.86 -52.49 -0.31 2.93 16 30 H 0.18 2.58 8.06 -52.48 -0.42 2.16 16 31 H 0.16 3.64 5.50 -52.48 -0.29 3.35 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.10 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -24.38 319.12 -7.00 -31.38 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.58 Total: 4.45 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -4.41 Total: -5.73 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.26 Total: -35.46 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.16 Total: -5.66 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.12 Total: -7.68 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -24.38 -7.00 -31.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227961239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.417 kcal (2) G-P(sol) polarization free energy of solvation -24.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds