Wall clock time and date at job start Tue Mar 31 2020 14:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48504 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47493 * 300.00272 * 3 2 1 6 6 H 1.48501 * 109.47030 * 60.00445 * 3 2 1 7 7 C 1.37878 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99797 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47084 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.46771 * 60.00577 * 9 7 2 12 12 C 1.35927 * 117.00256 * 84.52110 * 11 9 7 13 13 C 1.39088 * 120.85038 * 354.34850 * 12 11 9 14 14 N 1.32295 * 119.02947 * 179.71651 * 13 12 11 15 15 C 1.31793 * 120.87586 * 0.57842 * 14 13 12 16 16 C 1.50701 * 119.05488 * 179.72178 * 15 14 13 17 17 F 1.39899 * 109.46973 * 284.97504 * 16 15 14 18 18 F 1.39901 * 109.46968 * 44.97737 * 16 15 14 19 19 F 1.39898 * 109.46973 * 164.97544 * 16 15 14 20 20 N 1.31782 * 121.88677 * 359.69770 * 15 14 13 21 21 C 1.32291 * 120.87978 * 0.02562 * 20 15 14 22 22 C 1.50699 * 109.47455 * 300.00155 * 9 7 2 23 23 C 1.38239 * 119.99675 * 84.72716 * 22 9 7 24 24 C 1.38238 * 119.99710 * 179.81296 * 23 22 9 25 25 C 1.38233 * 119.99966 * 0.39336 * 24 23 22 26 26 C 1.38237 * 119.99956 * 359.85771 * 25 24 23 27 27 C 1.38229 * 120.00160 * 359.95816 * 26 25 24 28 28 H 0.97004 * 119.99830 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.49062 * 0.02562 * 13 12 11 30 30 H 1.08005 * 120.48123 * 180.02562 * 21 20 15 31 31 H 1.08005 * 120.00209 * 359.97438 * 23 22 9 32 32 H 1.07999 * 119.99619 * 180.23193 * 24 23 22 33 33 H 1.07999 * 119.99587 * 179.83332 * 25 24 23 34 34 H 1.07995 * 119.99624 * 179.97438 * 26 25 24 35 35 H 1.08001 * 120.00137 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 1.9593 -3.3276 -0.0005 11 8 0.4291 -2.5745 -1.1671 12 6 1.0159 -3.0249 -2.3074 13 6 2.3822 -3.2814 -2.3532 14 7 2.9148 -3.7243 -3.4803 15 6 2.1711 -3.9116 -4.5520 16 6 2.8217 -4.4114 -5.8161 17 9 3.5442 -3.3718 -6.4113 18 9 3.6885 -5.4657 -5.5090 19 9 1.8362 -4.8609 -6.7015 20 7 0.8747 -3.6747 -4.5498 21 6 0.2667 -3.2352 -3.4602 22 6 0.3850 -2.5792 1.2302 23 6 -0.8705 -2.0006 1.2307 24 6 -1.6664 -2.0775 2.3584 25 6 -1.2036 -2.7259 3.4881 26 6 0.0539 -3.3000 3.4893 27 6 0.8483 -3.2264 2.3604 28 1 -0.4850 0.8401 0.0004 29 1 2.9984 -3.1261 -1.4800 30 1 -0.7962 -3.0435 -3.4655 31 1 -1.2306 -1.4908 0.3493 32 1 -2.6487 -1.6287 2.3575 33 1 -1.8244 -2.7835 4.3700 34 1 0.4155 -3.8061 4.3720 35 1 1.8309 -3.6746 2.3614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227961239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:23 Heat of formation + Delta-G solvation = -112.059107 kcal Electronic energy + Delta-G solvation = -26858.259444 eV Core-core repulsion = 22407.073026 eV Total energy + Delta-G solvation = -4451.186418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.25219 -48.77602 -48.73742 -42.39077 -40.25891 -38.87308 -35.23919 -34.97572 -32.97655 -32.09195 -31.29596 -29.07623 -27.79062 -26.11040 -25.03035 -23.90100 -23.03214 -22.00447 -20.09342 -19.86442 -19.68670 -19.52233 -18.61852 -18.00620 -17.30569 -16.95006 -16.40747 -16.33294 -15.69995 -15.63251 -15.53999 -15.35480 -15.16767 -15.09142 -14.96121 -14.89289 -14.87034 -14.40388 -14.08065 -13.95571 -13.66627 -13.37439 -13.28350 -12.89487 -12.70702 -12.50894 -12.24176 -12.13332 -11.84930 -11.35243 -11.24281 -10.85466 -10.48471 -9.65772 -9.44005 -9.25836 -8.07393 -6.51290 -0.39540 -0.18940 0.76175 0.95041 1.18614 1.34917 1.41977 1.47881 2.21314 2.30003 2.34176 2.37629 2.54836 3.06577 3.24249 3.27519 3.33291 3.49101 3.66601 3.86790 4.24831 4.36003 4.43148 4.51656 4.66796 4.78000 4.88672 5.05077 5.16205 5.39338 5.52706 5.54958 5.64666 5.79336 5.84758 6.05824 6.21278 6.36994 6.51145 6.59316 6.75554 7.28589 8.71169 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003899 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.156889 B = 7179.262466 C = 8128.179182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.051 3.949 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.563 4.563 8 H 0.069 0.931 9 C 0.232 3.768 10 H 0.051 0.949 11 O -0.280 6.280 12 C 0.100 3.900 13 C 0.061 3.939 14 N -0.454 5.454 15 C 0.139 3.861 16 C 0.562 3.438 17 F -0.169 7.169 18 F -0.163 7.163 19 F -0.157 7.157 20 N -0.448 5.448 21 C 0.104 3.896 22 C -0.073 4.073 23 C -0.067 4.067 24 C -0.159 4.159 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.134 4.134 28 H 0.266 0.734 29 H 0.190 0.810 30 H 0.206 0.794 31 H 0.142 0.858 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 -6.321 -1.451 6.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.155 4.155 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.600 4.600 8 H 0.087 0.913 9 C 0.179 3.821 10 H 0.069 0.931 11 O -0.188 6.188 12 C 0.045 3.955 13 C -0.106 4.106 14 N -0.168 5.168 15 C -0.129 4.129 16 C 0.505 3.495 17 F -0.150 7.150 18 F -0.144 7.144 19 F -0.138 7.138 20 N -0.162 5.162 21 C -0.065 4.065 22 C -0.073 4.073 23 C -0.086 4.086 24 C -0.178 4.178 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.207 0.793 30 H 0.223 0.777 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.231 -6.471 -2.241 6.852 hybrid contribution 0.410 1.553 0.732 1.765 sum 0.179 -4.918 -1.509 5.148 Atomic orbital electron populations 1.69948 1.06382 1.27002 1.45357 1.25540 0.95543 1.01626 0.92805 0.85765 0.79508 0.80484 0.77515 1.19316 1.21016 1.20610 1.21621 0.93492 0.90873 1.53972 0.91268 1.19206 0.87753 0.95990 0.79123 0.93136 1.86378 1.41339 1.74921 1.16160 1.21266 0.93905 0.89615 0.90700 1.23645 0.93013 0.97525 0.96428 1.67730 1.40184 1.09858 0.99060 1.22328 0.88970 1.07157 0.94487 1.16819 0.75951 0.75392 0.81322 1.93226 1.78582 1.58439 1.84794 1.93224 1.70549 1.57609 1.93037 1.93228 1.61716 1.89171 1.69697 1.67903 1.09720 1.09784 1.28770 1.23042 1.02144 0.96545 0.84750 1.19780 0.94793 0.97432 0.95325 1.21719 0.93467 0.93515 0.99885 1.21400 1.00315 1.01592 0.94457 1.21293 0.96699 0.99145 0.98366 1.21153 0.94933 1.01971 0.98182 1.21023 1.00098 1.00543 0.93517 0.92335 0.79306 0.77692 0.84060 0.86145 0.84623 0.84308 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.62 8.50 21.45 0.18 -40.44 16 2 C 0.05 2.42 5.24 84.66 0.44 2.86 16 3 Si 0.94 39.02 29.54 68.60 2.03 41.05 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.56 -25.82 8.00 25.60 0.20 -25.61 16 8 H 0.07 3.14 7.81 -2.91 -0.02 3.12 16 9 C 0.23 9.68 2.12 29.10 0.06 9.74 16 10 H 0.05 1.93 6.32 -2.39 -0.02 1.91 16 11 O -0.28 -11.57 8.37 -92.72 -0.78 -12.34 16 12 C 0.10 3.71 6.63 22.68 0.15 3.86 16 13 C 0.06 2.22 9.97 84.83 0.85 3.07 16 14 N -0.45 -16.38 10.20 -187.49 -1.91 -18.30 16 15 C 0.14 4.81 7.09 138.75 0.98 5.80 16 16 C 0.56 17.24 3.49 71.24 0.25 17.49 16 17 F -0.17 -5.16 17.30 44.97 0.78 -4.39 16 18 F -0.16 -4.82 17.20 44.97 0.77 -4.05 16 19 F -0.16 -4.57 16.87 44.97 0.76 -3.81 16 20 N -0.45 -15.24 9.83 -187.49 -1.84 -17.09 16 21 C 0.10 3.43 11.27 84.83 0.96 4.39 16 22 C -0.07 -2.99 4.80 -19.87 -0.10 -3.09 16 23 C -0.07 -2.78 7.46 22.27 0.17 -2.61 16 24 C -0.16 -5.69 10.05 22.27 0.22 -5.46 16 25 C -0.14 -4.29 10.05 22.27 0.22 -4.06 16 26 C -0.14 -4.52 10.05 22.27 0.22 -4.30 16 27 C -0.13 -4.79 9.68 22.27 0.22 -4.58 16 28 H 0.27 12.31 8.31 -92.71 -0.77 11.54 16 29 H 0.19 6.61 5.86 -2.91 -0.02 6.59 16 30 H 0.21 5.60 8.06 -2.91 -0.02 5.58 16 31 H 0.14 6.47 5.50 -2.91 -0.02 6.45 16 32 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -50.86 319.12 6.00 -44.86 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.16 Total: 17.01 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.85 Total: -2.51 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -3.57 Total: -75.82 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.78 Total: -12.34 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 2.31 Total: -12.25 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -50.86 6.00 -44.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227961239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.200 kcal (2) G-P(sol) polarization free energy of solvation -50.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds