Wall clock time and date at job start Tue Mar 31 2020 14:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39711 * 120.19402 * 92.49203 * 3 2 1 5 5 C 1.37832 * 119.90072 * 180.25396 * 4 3 2 6 6 C 1.38519 * 120.29223 * 359.76664 * 5 4 3 7 7 C 1.38099 * 120.39718 * 359.97438 * 6 5 4 8 8 N 1.48011 * 119.95729 * 180.02562 * 7 6 5 9 9 O 1.21800 * 119.99767 * 4.84619 * 8 7 6 10 10 O 1.21800 * 119.99994 * 184.85118 * 8 7 6 11 11 C 1.38653 * 120.08997 * 359.97438 * 7 6 5 12 12 O 1.35700 * 120.14811 * 180.02562 * 11 7 6 13 13 C 1.42905 * 116.99850 * 273.21331 * 12 11 7 14 14 H 1.09003 * 109.46892 * 32.76164 * 13 12 11 15 15 C 1.50699 * 109.47360 * 272.75627 * 13 12 11 16 16 H 1.07999 * 119.99858 * 304.41624 * 15 13 12 17 17 C 1.37872 * 119.99936 * 124.41301 * 15 13 12 18 18 N 1.31523 * 120.00018 * 4.70460 * 17 15 13 19 19 Si 1.86796 * 120.00354 * 184.70881 * 17 15 13 20 20 H 1.48503 * 109.46978 * 59.99636 * 19 17 15 21 21 H 1.48493 * 109.47655 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46962 * 300.00146 * 19 17 15 23 23 C 1.50706 * 109.46964 * 152.75800 * 13 12 11 24 24 C 1.38234 * 119.99789 * 35.48622 * 23 13 12 25 25 C 1.38239 * 119.99619 * 179.78890 * 24 23 13 26 26 C 1.38234 * 119.99838 * 0.44392 * 25 24 23 27 27 C 1.38229 * 120.00159 * 359.81417 * 26 25 24 28 28 C 1.38231 * 120.00100 * 359.97438 * 27 26 25 29 29 H 1.07993 * 120.05227 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.85185 * 179.79175 * 5 4 3 31 31 H 1.08005 * 119.79952 * 179.97438 * 6 5 4 32 32 H 0.96994 * 119.99659 * 180.02562 * 18 17 15 33 33 H 1.07998 * 120.00126 * 0.02562 * 24 23 13 34 34 H 1.07994 * 119.99893 * 180.28213 * 25 24 23 35 35 H 1.08004 * 119.99468 * 179.83502 * 26 25 24 36 36 H 1.08007 * 119.99715 * 179.97438 * 27 26 25 37 37 H 1.08006 * 120.00183 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2706 0.0535 -1.2064 5 6 4.6489 0.0485 -1.1996 6 6 5.3415 -0.0038 -0.0011 7 6 4.6593 -0.0510 1.1987 8 7 5.4092 -0.1061 2.4736 9 8 6.6242 -0.0209 2.4696 10 8 4.8113 -0.2367 3.5266 11 6 3.2729 -0.0457 1.2107 12 8 2.6014 -0.0914 2.3890 13 6 2.3370 -1.3852 2.9353 14 1 3.1510 -2.0623 2.6760 15 6 1.0440 -1.9145 2.3704 16 1 0.1365 -1.3370 2.4662 17 6 1.0197 -3.1359 1.7313 18 7 2.1030 -3.8809 1.6953 19 14 -0.5516 -3.7326 0.9163 20 1 -0.9600 -2.7684 -0.1367 21 1 -0.3167 -5.0649 0.3042 22 1 -1.6276 -3.8389 1.9343 23 6 2.2260 -1.2843 4.4348 24 6 1.6581 -0.1639 5.0119 25 6 1.5523 -0.0733 6.3873 26 6 2.0228 -1.0989 7.1857 27 6 2.5956 -2.2168 6.6088 28 6 2.6974 -2.3095 5.2334 29 1 2.7346 0.0944 -2.1431 30 1 5.1912 0.0859 -2.1328 31 1 6.4215 -0.0078 -0.0051 32 1 2.0860 -4.7400 1.2453 33 1 1.2935 0.6388 4.3882 34 1 1.1044 0.8000 6.8380 35 1 1.9425 -1.0268 8.2604 36 1 2.9636 -3.0180 7.2327 37 1 3.1453 -3.1828 4.7826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228773328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:55 Heat of formation + Delta-G solvation = 47.077811 kcal Electronic energy + Delta-G solvation = -27525.581421 eV Core-core repulsion = 23623.152437 eV Total energy + Delta-G solvation = -3902.428983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69642 -39.72586 -38.43270 -36.96264 -35.85810 -35.82934 -33.38688 -31.84917 -31.30739 -30.09860 -29.87364 -26.99158 -26.07255 -23.98312 -23.48484 -22.04726 -21.61152 -20.38042 -19.65367 -18.18197 -17.31167 -17.19777 -17.07556 -16.80041 -16.22368 -15.70267 -15.28807 -14.75164 -14.68080 -13.95330 -13.71877 -13.31471 -13.03781 -12.98409 -12.67460 -12.54923 -12.27083 -12.16309 -12.01001 -11.82316 -11.62477 -11.23651 -11.08193 -11.01598 -10.87142 -10.57250 -10.55873 -10.37729 -10.26840 -9.69089 -9.39363 -9.09418 -9.00305 -8.68787 -8.07322 -7.78556 -6.53931 -4.61022 0.16494 0.80224 1.66722 1.85080 2.25738 2.26702 3.00678 3.11438 3.13314 3.22404 3.25818 3.83658 4.07420 4.17304 4.22271 4.64449 4.68346 4.86507 4.88115 4.92646 5.24208 5.37678 5.64620 5.71375 5.76328 5.82861 5.94119 6.05050 6.16585 6.29337 6.38422 6.47068 6.71613 6.83606 6.85183 6.95866 7.27878 7.32694 7.41522 7.54999 7.70543 7.88651 8.01545 8.09498 8.20311 8.62614 9.04307 10.46922 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.007753 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.220546 B = 3610.485059 C = 5473.815707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.271 3.729 3 C -0.044 4.044 4 C -0.015 4.015 5 C -0.151 4.151 6 C -0.021 4.021 7 C -0.089 4.089 8 N 0.036 4.964 9 O -0.198 6.198 10 O -0.117 6.117 11 C 0.255 3.745 12 O -0.339 6.339 13 C 0.238 3.762 14 H 0.074 0.926 15 C -0.515 4.515 16 H 0.070 0.930 17 C 0.079 3.921 18 N -0.866 5.866 19 Si 0.889 3.111 20 H -0.260 1.260 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.014 4.014 24 C -0.107 4.107 25 C -0.128 4.128 26 C -0.146 4.146 27 C -0.124 4.124 28 C -0.106 4.106 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.274 0.726 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.808 5.459 -3.719 8.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.044 4.044 3 C -0.049 4.049 4 C -0.035 4.035 5 C -0.169 4.169 6 C -0.041 4.041 7 C -0.174 4.174 8 N 0.554 4.446 9 O -0.403 6.403 10 O -0.343 6.343 11 C 0.203 3.797 12 O -0.256 6.256 13 C 0.188 3.812 14 H 0.092 0.908 15 C -0.551 4.551 16 H 0.088 0.912 17 C -0.129 4.129 18 N -0.501 5.501 19 Si 0.714 3.286 20 H -0.185 1.185 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.014 4.014 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.164 4.164 27 C -0.142 4.142 28 C -0.124 4.124 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.758 5.424 -4.282 7.866 hybrid contribution -0.120 -0.763 -0.090 0.777 sum 3.638 4.661 -4.372 7.353 Atomic orbital electron populations 1.81090 1.11685 1.08146 1.06742 1.24605 0.91668 0.94131 0.94045 1.16176 0.86346 1.09630 0.92746 1.21458 0.94336 0.90885 0.96845 1.20872 0.93422 1.05037 0.97615 1.21062 1.01816 0.91578 0.89619 1.21470 0.91631 1.19199 0.85054 1.43283 1.00784 0.97811 1.02688 1.94459 0.96123 1.55809 1.93882 1.94676 1.70427 1.50306 1.18871 1.18232 0.86645 0.86814 0.87974 1.86075 1.73394 1.35083 1.31056 1.19406 0.97813 0.77567 0.86404 0.90844 1.21534 0.94665 1.03547 1.35354 0.91179 1.25077 0.97040 0.96255 0.94506 1.69857 1.28126 1.11749 1.40417 0.86632 0.83074 0.78235 0.80648 1.18453 1.20784 1.19382 1.19787 0.93809 0.93008 0.94845 1.20863 0.99540 0.97999 0.94080 1.20954 1.01205 0.98484 0.94013 1.20842 1.01819 0.95095 0.98626 1.20910 1.00747 0.97826 0.94754 1.20835 0.99822 0.98794 0.92934 0.83590 0.83240 0.82883 0.91592 0.86776 0.87401 0.87468 0.87171 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -8.55 18.52 41.84 0.78 -7.78 16 2 C 0.27 5.29 13.09 -22.47 -0.29 5.00 16 3 C -0.04 -0.75 5.75 -106.70 -0.61 -1.37 16 4 C -0.01 -0.17 9.76 -39.18 -0.38 -0.56 16 5 C -0.15 -1.54 10.02 -39.63 -0.40 -1.94 16 6 C -0.02 -0.27 9.54 -39.53 -0.38 -0.65 16 7 C -0.09 -1.56 6.85 -79.85 -0.55 -2.10 16 8 N 0.04 0.70 4.45 34.01 0.15 0.85 16 9 O -0.20 -3.70 18.45 -29.46 -0.54 -4.25 16 10 O -0.12 -2.54 15.28 -36.48 -0.56 -3.10 16 11 C 0.26 4.93 5.52 -38.70 -0.21 4.72 16 12 O -0.34 -7.50 6.93 -40.89 -0.28 -7.78 16 13 C 0.24 5.64 1.64 -29.03 -0.05 5.60 16 14 H 0.07 1.90 6.54 -51.93 -0.34 1.56 16 15 C -0.52 -13.03 6.78 -34.44 -0.23 -13.26 16 16 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 17 C 0.08 1.99 5.45 -17.82 -0.10 1.89 16 18 N -0.87 -22.33 12.63 55.43 0.70 -21.63 16 19 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 20 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.01 -0.32 4.01 -104.62 -0.42 -0.74 16 24 C -0.11 -2.22 9.35 -39.58 -0.37 -2.59 16 25 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.15 -2.52 10.05 -39.59 -0.40 -2.92 16 27 C -0.12 -2.28 10.05 -39.59 -0.40 -2.68 16 28 C -0.11 -2.25 9.68 -39.59 -0.38 -2.64 16 29 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.15 1.62 7.60 -52.48 -0.40 1.22 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.11 2.37 7.64 -52.49 -0.40 1.97 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -29.36 340.97 -8.43 -37.79 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.22 Total: 2.28 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -5.57 Total: -16.96 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 1.63 Total: -28.55 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -1.38 Total: -15.13 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.36 -8.43 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228773328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.872 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds