Wall clock time and date at job start Tue Mar 31 2020 14:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39711 * 120.19402 * 92.49203 * 3 2 1 5 5 C 1.37832 * 119.90072 * 180.25396 * 4 3 2 6 6 C 1.38519 * 120.29223 * 359.76664 * 5 4 3 7 7 C 1.38099 * 120.39718 * 359.97438 * 6 5 4 8 8 N 1.48011 * 119.95729 * 180.02562 * 7 6 5 9 9 O 1.21800 * 119.99767 * 4.84619 * 8 7 6 10 10 O 1.21800 * 119.99994 * 184.85118 * 8 7 6 11 11 C 1.38653 * 120.08997 * 359.97438 * 7 6 5 12 12 O 1.35700 * 120.14811 * 180.02562 * 11 7 6 13 13 C 1.42905 * 116.99850 * 273.21331 * 12 11 7 14 14 H 1.09003 * 109.46892 * 32.76164 * 13 12 11 15 15 C 1.50699 * 109.47360 * 272.75627 * 13 12 11 16 16 H 1.07999 * 119.99858 * 304.41624 * 15 13 12 17 17 C 1.37872 * 119.99936 * 124.41301 * 15 13 12 18 18 N 1.31523 * 120.00018 * 4.70460 * 17 15 13 19 19 Si 1.86796 * 120.00354 * 184.70881 * 17 15 13 20 20 H 1.48503 * 109.46978 * 59.99636 * 19 17 15 21 21 H 1.48493 * 109.47655 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46962 * 300.00146 * 19 17 15 23 23 C 1.50706 * 109.46964 * 152.75800 * 13 12 11 24 24 C 1.38234 * 119.99789 * 35.48622 * 23 13 12 25 25 C 1.38239 * 119.99619 * 179.78890 * 24 23 13 26 26 C 1.38234 * 119.99838 * 0.44392 * 25 24 23 27 27 C 1.38229 * 120.00159 * 359.81417 * 26 25 24 28 28 C 1.38231 * 120.00100 * 359.97438 * 27 26 25 29 29 H 1.07993 * 120.05227 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.85185 * 179.79175 * 5 4 3 31 31 H 1.08005 * 119.79952 * 179.97438 * 6 5 4 32 32 H 0.96994 * 119.99659 * 180.02562 * 18 17 15 33 33 H 1.07998 * 120.00126 * 0.02562 * 24 23 13 34 34 H 1.07994 * 119.99893 * 180.28213 * 25 24 23 35 35 H 1.08004 * 119.99468 * 179.83502 * 26 25 24 36 36 H 1.08007 * 119.99715 * 179.97438 * 27 26 25 37 37 H 1.08006 * 120.00183 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2706 0.0535 -1.2064 5 6 4.6489 0.0485 -1.1996 6 6 5.3415 -0.0038 -0.0011 7 6 4.6593 -0.0510 1.1987 8 7 5.4092 -0.1061 2.4736 9 8 6.6242 -0.0209 2.4696 10 8 4.8113 -0.2367 3.5266 11 6 3.2729 -0.0457 1.2107 12 8 2.6014 -0.0914 2.3890 13 6 2.3370 -1.3852 2.9353 14 1 3.1510 -2.0623 2.6760 15 6 1.0440 -1.9145 2.3704 16 1 0.1365 -1.3370 2.4662 17 6 1.0197 -3.1359 1.7313 18 7 2.1030 -3.8809 1.6953 19 14 -0.5516 -3.7326 0.9163 20 1 -0.9600 -2.7684 -0.1367 21 1 -0.3167 -5.0649 0.3042 22 1 -1.6276 -3.8389 1.9343 23 6 2.2260 -1.2843 4.4348 24 6 1.6581 -0.1639 5.0119 25 6 1.5523 -0.0733 6.3873 26 6 2.0228 -1.0989 7.1857 27 6 2.5956 -2.2168 6.6088 28 6 2.6974 -2.3095 5.2334 29 1 2.7346 0.0944 -2.1431 30 1 5.1912 0.0859 -2.1328 31 1 6.4215 -0.0078 -0.0051 32 1 2.0860 -4.7400 1.2453 33 1 1.2935 0.6388 4.3882 34 1 1.1044 0.8000 6.8380 35 1 1.9425 -1.0268 8.2604 36 1 2.9636 -3.0180 7.2327 37 1 3.1453 -3.1828 4.7826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228773328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:55 Heat of formation + Delta-G solvation = 32.670167 kcal Electronic energy + Delta-G solvation = -27526.206183 eV Core-core repulsion = 23623.152437 eV Total energy + Delta-G solvation = -3903.053746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.15145 -41.12294 -39.92368 -38.41046 -37.38713 -37.34417 -35.20267 -33.12162 -32.86376 -31.60775 -31.22883 -28.75984 -27.45380 -25.51444 -24.98202 -23.44033 -23.06878 -21.96327 -21.03292 -19.64482 -19.00996 -18.64913 -18.53180 -18.31675 -17.75976 -17.06233 -16.80443 -16.30603 -16.04294 -15.41285 -15.28597 -14.88869 -14.52281 -14.47922 -14.08376 -13.96625 -13.90871 -13.58157 -13.40986 -13.24645 -13.15529 -12.99167 -12.75986 -12.54512 -12.48645 -12.27446 -12.10219 -11.91382 -11.82306 -11.42125 -10.95101 -10.76419 -10.58595 -9.97967 -9.62050 -9.37685 -8.42484 -6.56831 -1.14020 -0.47754 0.33837 0.48417 0.70148 0.73964 1.22686 1.24145 1.35084 1.73685 1.79745 2.18728 2.41419 2.76566 2.84441 2.98015 3.18304 3.58891 3.71151 3.90670 3.96155 4.20601 4.26697 4.29452 4.39809 4.55744 4.71929 4.78871 4.89441 4.93224 4.95333 4.96441 5.26997 5.30552 5.35570 5.44527 5.47899 5.75467 5.77971 5.84578 6.01079 6.28663 6.35267 6.56644 6.67896 6.78138 7.13266 8.58352 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.007753 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.220546 B = 3610.485059 C = 5473.815707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.283 3.717 3 C -0.071 4.071 4 C 0.007 3.993 5 C -0.112 4.112 6 C -0.010 4.010 7 C -0.108 4.108 8 N 0.036 4.964 9 O -0.160 6.160 10 O -0.193 6.193 11 C 0.217 3.783 12 O -0.356 6.356 13 C 0.262 3.738 14 H 0.041 0.959 15 C -0.525 4.525 16 H 0.044 0.956 17 C 0.052 3.948 18 N -0.893 5.893 19 Si 0.926 3.074 20 H -0.265 1.265 21 H -0.269 1.269 22 H -0.277 1.277 23 C -0.041 4.041 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.137 4.137 27 C -0.121 4.121 28 C -0.131 4.131 29 H 0.190 0.810 30 H 0.215 0.785 31 H 0.187 0.813 32 H 0.275 0.725 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 6.244 -5.372 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.032 4.032 3 C -0.075 4.075 4 C -0.013 4.013 5 C -0.130 4.130 6 C -0.030 4.030 7 C -0.193 4.193 8 N 0.550 4.450 9 O -0.378 6.378 10 O -0.400 6.400 11 C 0.166 3.834 12 O -0.273 6.273 13 C 0.210 3.790 14 H 0.059 0.941 15 C -0.562 4.562 16 H 0.062 0.938 17 C -0.152 4.152 18 N -0.530 5.530 19 Si 0.750 3.250 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.202 1.202 23 C -0.042 4.042 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.139 4.139 28 C -0.149 4.149 29 H 0.207 0.793 30 H 0.232 0.768 31 H 0.204 0.796 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.573 6.207 -5.853 10.190 hybrid contribution -0.440 -0.816 0.248 0.960 sum 5.133 5.391 -5.605 9.318 Atomic orbital electron populations 1.81070 1.13017 1.09958 1.08114 1.25133 0.92386 0.92827 0.92824 1.16510 0.85232 1.11757 0.94047 1.22083 0.95420 0.87542 0.96251 1.21647 0.92478 1.00105 0.98762 1.21700 1.03545 0.89315 0.88427 1.21762 0.91149 1.21128 0.85276 1.43623 1.00865 0.97144 1.03397 1.94384 0.96383 1.53003 1.94010 1.94711 1.70645 1.54478 1.20200 1.18662 0.87755 0.89263 0.87674 1.85940 1.74252 1.34282 1.32830 1.18896 0.95525 0.77357 0.87189 0.94087 1.21399 0.94483 1.03808 1.36480 0.93760 1.25442 0.98581 0.96245 0.94912 1.69929 1.29021 1.12114 1.41934 0.86086 0.80888 0.78267 0.79724 1.18946 1.19363 1.20233 1.19909 0.95298 0.94221 0.94751 1.20888 1.00603 0.97408 0.95634 1.21336 1.00248 0.99894 0.92755 1.21314 0.99739 0.93693 1.00708 1.21277 0.99843 0.99180 0.93571 1.20865 1.01199 0.98222 0.94621 0.79283 0.76836 0.79628 0.91556 0.88109 0.84146 0.83087 0.84094 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.74 18.52 19.00 0.35 -19.39 16 2 C 0.28 11.34 13.09 88.33 1.16 12.50 16 3 C -0.07 -2.38 5.75 -21.21 -0.12 -2.50 16 4 C 0.01 0.14 9.76 22.53 0.22 0.36 16 5 C -0.11 -1.58 10.02 22.24 0.22 -1.36 16 6 C -0.01 -0.23 9.54 22.30 0.21 -0.01 16 7 C -0.11 -3.74 6.85 36.44 0.25 -3.49 16 8 N 0.04 1.42 4.45 -46.31 -0.21 1.22 16 9 O -0.16 -5.79 18.45 18.89 0.35 -5.44 16 10 O -0.19 -8.96 15.28 25.60 0.39 -8.57 16 11 C 0.22 8.62 5.52 22.84 0.13 8.75 16 12 O -0.36 -16.94 6.93 -69.09 -0.48 -17.42 16 13 C 0.26 13.38 1.64 29.10 0.05 13.43 16 14 H 0.04 2.32 6.54 -2.39 -0.02 2.30 16 15 C -0.53 -28.42 6.78 25.60 0.17 -28.25 16 16 H 0.04 2.56 7.82 -2.91 -0.02 2.54 16 17 C 0.05 2.79 5.45 84.65 0.46 3.25 16 18 N -0.89 -48.22 12.63 21.45 0.27 -47.95 16 19 Si 0.93 43.40 29.54 68.60 2.03 45.42 16 20 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 C -0.04 -2.00 4.01 -19.86 -0.08 -2.08 16 24 C -0.13 -5.61 9.35 22.27 0.21 -5.40 16 25 C -0.12 -4.47 10.05 22.27 0.22 -4.24 16 26 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 27 C -0.12 -4.41 10.05 22.27 0.22 -4.19 16 28 C -0.13 -5.92 9.68 22.27 0.22 -5.71 16 29 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.19 2.86 7.60 -2.91 -0.02 2.83 16 32 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 33 H 0.10 4.57 7.64 -2.91 -0.02 4.55 16 34 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -73.81 340.97 7.59 -66.21 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.13 Total: 9.14 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 3.76 Total: -23.22 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.42 Total: -66.12 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: 0.26 Total: -31.43 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.81 7.59 -66.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228773328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.881 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds