Wall clock time and date at job start Tue Mar 31 2020 14:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39726 * 120.19078 * 243.57711 * 3 2 1 5 5 C 1.37820 * 119.89903 * 180.23197 * 4 3 2 6 6 C 1.38521 * 120.29478 * 359.47004 * 5 4 3 7 7 N 1.48014 * 119.80112 * 180.25816 * 6 5 4 8 8 O 1.21803 * 119.99847 * 180.29689 * 7 6 5 9 9 O 1.21798 * 120.00482 * 0.29413 * 7 6 5 10 10 C 1.38098 * 120.39156 * 0.55392 * 6 5 4 11 11 C 1.38641 * 120.09385 * 359.70346 * 10 6 5 12 12 O 1.35711 * 120.15094 * 180.02562 * 11 10 6 13 13 C 1.42903 * 116.99792 * 354.59858 * 12 11 10 14 14 H 1.08999 * 109.47068 * 324.14857 * 13 12 11 15 15 C 1.50696 * 109.47333 * 84.15460 * 13 12 11 16 16 H 1.07993 * 120.00025 * 240.00027 * 15 13 12 17 17 C 1.37882 * 119.99740 * 59.99960 * 15 13 12 18 18 N 1.31509 * 120.00379 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99380 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47461 * 60.00428 * 19 17 15 21 21 H 1.48509 * 109.46636 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47306 * 299.99613 * 19 17 15 23 23 C 1.50702 * 109.46693 * 204.15485 * 13 12 11 24 24 C 1.38235 * 120.00207 * 324.72684 * 23 13 12 25 25 C 1.38231 * 119.99990 * 179.81278 * 24 23 13 26 26 C 1.38236 * 119.99878 * 0.39239 * 25 24 23 27 27 C 1.38235 * 120.00318 * 359.85989 * 26 25 24 28 28 C 1.38235 * 119.99911 * 359.95372 * 27 26 25 29 29 H 1.08000 * 120.04761 * 359.95573 * 4 3 2 30 30 H 1.08001 * 119.85207 * 179.72766 * 5 4 3 31 31 H 1.08006 * 119.95692 * 179.72504 * 10 6 5 32 32 H 0.97000 * 120.00244 * 179.97438 * 18 17 15 33 33 H 1.07996 * 119.99927 * 359.97438 * 24 23 13 34 34 H 1.07998 * 120.00361 * 180.22347 * 25 24 23 35 35 H 1.08004 * 120.00100 * 179.83575 * 26 25 24 36 36 H 1.07996 * 120.00386 * 179.97438 * 27 26 25 37 37 H 1.07991 * 120.00108 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2703 0.5384 1.0816 5 6 4.6485 0.5402 1.0731 6 6 5.3415 0.0012 0.0016 7 7 6.8216 0.0037 0.0066 8 8 7.4345 -0.4644 -0.9362 9 8 7.4267 0.4740 0.9532 10 6 4.6595 -0.5330 -1.0738 11 6 3.2731 -0.5385 -1.0847 12 8 2.6018 -1.0637 -2.1407 13 6 3.3826 -1.4865 -3.2604 14 1 4.2261 -0.8089 -3.3919 15 6 3.8934 -2.8834 -3.0179 16 1 4.9562 -3.0737 -2.9973 17 6 3.0037 -3.9185 -2.8223 18 7 1.7094 -3.6867 -2.8468 19 14 3.6370 -5.6501 -2.5223 20 1 4.4787 -5.6644 -1.2990 21 1 2.4876 -6.5732 -2.3426 22 1 4.4478 -6.0891 -3.6863 23 6 2.5287 -1.4724 -4.5021 24 6 1.1908 -1.8116 -4.4249 25 6 0.4067 -1.7948 -5.5632 26 6 0.9624 -1.4468 -6.7802 27 6 2.3015 -1.1127 -6.8584 28 6 3.0848 -1.1257 -5.7194 29 1 2.7340 0.9560 1.9208 30 1 5.1907 0.9600 1.9075 31 1 5.2069 -0.9475 -1.9076 32 1 1.0836 -4.4149 -2.7095 33 1 0.7576 -2.0870 -3.4748 34 1 -0.6393 -2.0563 -5.5023 35 1 0.3505 -1.4363 -7.6700 36 1 2.7358 -0.8412 -7.8092 37 1 4.1308 -0.8643 -5.7804 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228926913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:35 Heat of formation + Delta-G solvation = 51.645360 kcal Electronic energy + Delta-G solvation = -26623.105521 eV Core-core repulsion = 22720.874601 eV Total energy + Delta-G solvation = -3902.230920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.01555 -40.11066 -38.47579 -37.06441 -36.37535 -36.17008 -33.47672 -32.04143 -31.01480 -30.11617 -29.70818 -27.49780 -26.78572 -23.92225 -22.98656 -22.37039 -21.60098 -20.47347 -19.36223 -19.04041 -18.51678 -17.37161 -17.27315 -16.42158 -15.98547 -15.59326 -15.22884 -14.52176 -14.49632 -14.27127 -13.94092 -13.72863 -13.40963 -13.05155 -12.65067 -12.62560 -12.44040 -12.38216 -11.87705 -11.83721 -11.74556 -11.62891 -11.34076 -11.15232 -10.99694 -10.96507 -10.84741 -10.69052 -10.31884 -9.75834 -9.64996 -9.42545 -9.08318 -8.12857 -7.97346 -7.75225 -6.34957 -4.74246 -0.19503 1.14497 1.40130 1.54016 2.20770 2.38888 2.89053 2.94240 3.07477 3.13901 3.16563 3.65340 3.80665 3.96309 4.05193 4.53346 4.71784 4.77855 4.82075 4.98377 5.19685 5.43361 5.62865 5.64144 5.71694 5.81284 5.85297 5.92124 6.04418 6.13381 6.29334 6.45566 6.56562 6.61028 6.81779 7.03952 7.25826 7.31623 7.41715 7.58306 7.68132 7.72690 7.81269 7.97218 8.01238 8.41695 9.04966 10.47352 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.005014 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.253049 B = 5582.933611 C = 6056.953353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.268 3.732 3 C -0.044 4.044 4 C -0.033 4.033 5 C -0.128 4.128 6 C 0.019 3.981 7 N 0.027 4.973 8 O -0.153 6.153 9 O -0.165 6.165 10 C -0.142 4.142 11 C 0.227 3.773 12 O -0.272 6.272 13 C 0.232 3.768 14 H 0.044 0.956 15 C -0.552 4.552 16 H 0.076 0.924 17 C 0.086 3.914 18 N -0.840 5.840 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.271 1.271 23 C -0.049 4.049 24 C -0.047 4.047 25 C -0.150 4.150 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.121 4.121 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.271 0.729 33 H 0.163 0.837 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 6.692 2.844 7.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.048 4.048 3 C -0.049 4.049 4 C -0.054 4.054 5 C -0.148 4.148 6 C -0.064 4.064 7 N 0.547 4.453 8 O -0.370 6.370 9 O -0.380 6.380 10 C -0.162 4.162 11 C 0.172 3.828 12 O -0.181 6.181 13 C 0.179 3.821 14 H 0.062 0.938 15 C -0.588 4.588 16 H 0.094 0.906 17 C -0.123 4.123 18 N -0.473 5.473 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.196 1.196 23 C -0.050 4.050 24 C -0.066 4.066 25 C -0.168 4.168 26 C -0.157 4.157 27 C -0.164 4.164 28 C -0.140 4.140 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.191 0.809 32 H 0.081 0.919 33 H 0.180 0.820 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.553 6.539 2.789 7.131 hybrid contribution 1.338 -1.367 -0.175 1.920 sum 0.784 5.172 2.614 5.848 Atomic orbital electron populations 1.81167 1.11769 1.08204 1.07270 1.25007 0.91993 0.93878 0.93899 1.15677 0.85493 1.07524 0.96213 1.20823 0.92338 0.95951 0.96300 1.20553 0.93824 1.02143 0.98237 1.21044 0.78858 1.07239 0.99299 1.43683 1.03824 0.98009 0.99813 1.94571 1.68757 1.46432 1.27289 1.94495 1.69485 1.46975 1.27040 1.21256 0.93896 1.01193 0.99832 1.18759 0.88807 0.86883 0.88401 1.86442 1.38170 1.69704 1.23809 1.19306 0.87935 0.95108 0.79724 0.93841 1.21383 0.94016 0.91416 1.51967 0.90605 1.25071 0.94675 0.99777 0.92771 1.69790 1.01303 1.32759 1.43481 0.86508 0.78783 0.82759 0.79392 1.19644 1.20770 1.19572 1.19618 0.94373 0.97452 0.93531 1.21848 0.93249 0.91337 1.00154 1.21159 0.99326 1.02813 0.93537 1.20898 0.95275 1.02330 0.97194 1.20734 0.94310 1.03956 0.97433 1.20749 0.98966 1.01710 0.92542 0.82893 0.82762 0.80858 0.91867 0.82026 0.87749 0.87911 0.87546 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.54 18.54 41.83 0.78 -6.76 16 2 C 0.27 4.48 14.87 -22.48 -0.33 4.14 16 3 C -0.04 -0.66 5.75 -106.69 -0.61 -1.28 16 4 C -0.03 -0.37 9.76 -39.18 -0.38 -0.75 16 5 C -0.13 -1.49 9.53 -39.63 -0.38 -1.87 16 6 C 0.02 0.28 6.85 -79.90 -0.55 -0.27 16 7 N 0.03 0.43 4.45 33.99 0.15 0.58 16 8 O -0.15 -2.63 18.43 -29.46 -0.54 -3.17 16 9 O -0.17 -2.56 18.43 -29.46 -0.54 -3.10 16 10 C -0.14 -2.32 8.19 -39.48 -0.32 -2.65 16 11 C 0.23 3.94 6.59 -38.71 -0.26 3.69 16 12 O -0.27 -5.64 7.78 -18.84 -0.15 -5.79 16 13 C 0.23 4.88 2.11 -29.04 -0.06 4.81 16 14 H 0.04 0.84 6.27 -51.93 -0.33 0.51 16 15 C -0.55 -12.71 7.92 -34.44 -0.27 -12.98 16 16 H 0.08 1.72 7.81 -52.49 -0.41 1.31 16 17 C 0.09 2.04 5.24 -17.82 -0.09 1.94 16 18 N -0.84 -20.34 8.50 55.43 0.47 -19.87 16 19 Si 0.90 19.18 29.54 -169.99 -5.02 14.16 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.05 -1.05 4.80 -104.62 -0.50 -1.55 16 24 C -0.05 -1.03 7.46 -39.58 -0.30 -1.32 16 25 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 26 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 27 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 28 C -0.12 -2.33 9.68 -39.58 -0.38 -2.71 16 29 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.15 1.42 7.59 -52.49 -0.40 1.03 16 31 H 0.17 3.01 5.20 -52.48 -0.27 2.73 16 32 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 33 H 0.16 3.87 5.50 -52.49 -0.29 3.58 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -25.83 336.87 -8.36 -34.19 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.95 Total: 4.61 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -5.64 Total: -19.93 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 1.40 Total: -26.05 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.23 Total: -12.06 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.83 -8.36 -34.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228926913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.836 kcal (2) G-P(sol) polarization free energy of solvation -25.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds