Wall clock time and date at job start Tue Mar 31 2020 14:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39726 * 120.19078 * 243.57711 * 3 2 1 5 5 C 1.37820 * 119.89903 * 180.23197 * 4 3 2 6 6 C 1.38521 * 120.29478 * 359.47004 * 5 4 3 7 7 N 1.48014 * 119.80112 * 180.25816 * 6 5 4 8 8 O 1.21803 * 119.99847 * 180.29689 * 7 6 5 9 9 O 1.21798 * 120.00482 * 0.29413 * 7 6 5 10 10 C 1.38098 * 120.39156 * 0.55392 * 6 5 4 11 11 C 1.38641 * 120.09385 * 359.70346 * 10 6 5 12 12 O 1.35711 * 120.15094 * 180.02562 * 11 10 6 13 13 C 1.42903 * 116.99792 * 354.59858 * 12 11 10 14 14 H 1.08999 * 109.47068 * 324.14857 * 13 12 11 15 15 C 1.50696 * 109.47333 * 84.15460 * 13 12 11 16 16 H 1.07993 * 120.00025 * 240.00027 * 15 13 12 17 17 C 1.37882 * 119.99740 * 59.99960 * 15 13 12 18 18 N 1.31509 * 120.00379 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99380 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47461 * 60.00428 * 19 17 15 21 21 H 1.48509 * 109.46636 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47306 * 299.99613 * 19 17 15 23 23 C 1.50702 * 109.46693 * 204.15485 * 13 12 11 24 24 C 1.38235 * 120.00207 * 324.72684 * 23 13 12 25 25 C 1.38231 * 119.99990 * 179.81278 * 24 23 13 26 26 C 1.38236 * 119.99878 * 0.39239 * 25 24 23 27 27 C 1.38235 * 120.00318 * 359.85989 * 26 25 24 28 28 C 1.38235 * 119.99911 * 359.95372 * 27 26 25 29 29 H 1.08000 * 120.04761 * 359.95573 * 4 3 2 30 30 H 1.08001 * 119.85207 * 179.72766 * 5 4 3 31 31 H 1.08006 * 119.95692 * 179.72504 * 10 6 5 32 32 H 0.97000 * 120.00244 * 179.97438 * 18 17 15 33 33 H 1.07996 * 119.99927 * 359.97438 * 24 23 13 34 34 H 1.07998 * 120.00361 * 180.22347 * 25 24 23 35 35 H 1.08004 * 120.00100 * 179.83575 * 26 25 24 36 36 H 1.07996 * 120.00386 * 179.97438 * 27 26 25 37 37 H 1.07991 * 120.00108 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2703 0.5384 1.0816 5 6 4.6485 0.5402 1.0731 6 6 5.3415 0.0012 0.0016 7 7 6.8216 0.0037 0.0066 8 8 7.4345 -0.4644 -0.9362 9 8 7.4267 0.4740 0.9532 10 6 4.6595 -0.5330 -1.0738 11 6 3.2731 -0.5385 -1.0847 12 8 2.6018 -1.0637 -2.1407 13 6 3.3826 -1.4865 -3.2604 14 1 4.2261 -0.8089 -3.3919 15 6 3.8934 -2.8834 -3.0179 16 1 4.9562 -3.0737 -2.9973 17 6 3.0037 -3.9185 -2.8223 18 7 1.7094 -3.6867 -2.8468 19 14 3.6370 -5.6501 -2.5223 20 1 4.4787 -5.6644 -1.2990 21 1 2.4876 -6.5732 -2.3426 22 1 4.4478 -6.0891 -3.6863 23 6 2.5287 -1.4724 -4.5021 24 6 1.1908 -1.8116 -4.4249 25 6 0.4067 -1.7948 -5.5632 26 6 0.9624 -1.4468 -6.7802 27 6 2.3015 -1.1127 -6.8584 28 6 3.0848 -1.1257 -5.7194 29 1 2.7340 0.9560 1.9208 30 1 5.1907 0.9600 1.9075 31 1 5.2069 -0.9475 -1.9076 32 1 1.0836 -4.4149 -2.7095 33 1 0.7576 -2.0870 -3.4748 34 1 -0.6393 -2.0563 -5.5023 35 1 0.3505 -1.4363 -7.6700 36 1 2.7358 -0.8412 -7.8092 37 1 4.1308 -0.8643 -5.7804 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228926913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:34 Heat of formation + Delta-G solvation = 41.566763 kcal Electronic energy + Delta-G solvation = -26623.542562 eV Core-core repulsion = 22720.874601 eV Total energy + Delta-G solvation = -3902.667960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.26116 -41.42560 -39.90526 -38.44139 -37.64073 -37.52741 -35.13493 -33.30030 -32.49535 -31.50973 -31.06738 -29.07045 -28.09202 -25.47667 -24.19948 -23.70648 -23.06335 -21.95900 -20.63773 -20.30845 -19.76901 -18.86005 -18.60449 -17.83304 -17.42607 -16.93254 -16.84960 -15.98269 -15.82769 -15.60229 -15.25021 -15.01545 -14.88815 -14.49803 -14.11503 -13.96287 -13.87835 -13.74077 -13.36219 -13.25961 -13.19544 -12.93431 -12.85286 -12.61273 -12.48904 -12.32539 -12.24750 -12.16508 -11.87456 -11.32562 -11.20108 -10.86356 -10.57118 -9.54923 -9.38113 -9.29478 -8.09104 -6.53682 -1.42572 0.04130 0.14639 0.33258 0.70595 0.89425 1.34661 1.37891 1.42807 1.55397 1.69292 2.28268 2.31172 2.56183 2.71665 3.06870 3.23356 3.47005 3.60396 3.76161 4.03583 4.19963 4.30801 4.34100 4.44513 4.45416 4.59674 4.69081 4.72264 4.92313 4.95828 5.09772 5.14066 5.33843 5.37360 5.50614 5.58140 5.77401 5.79059 6.00801 6.16910 6.32979 6.39630 6.47228 6.53932 6.75428 7.26267 8.68645 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.005014 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.253049 B = 5582.933611 C = 6056.953353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.281 3.719 3 C -0.044 4.044 4 C -0.003 4.003 5 C -0.100 4.100 6 C 0.013 3.987 7 N 0.027 4.973 8 O -0.209 6.209 9 O -0.125 6.125 10 C -0.155 4.155 11 C 0.197 3.803 12 O -0.297 6.297 13 C 0.238 3.762 14 H 0.048 0.952 15 C -0.561 4.561 16 H 0.067 0.933 17 C 0.050 3.950 18 N -0.855 5.855 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.074 4.074 24 C -0.068 4.068 25 C -0.162 4.162 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.133 4.133 29 H 0.205 0.795 30 H 0.195 0.805 31 H 0.153 0.847 32 H 0.264 0.736 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 8.258 3.983 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.033 4.033 3 C -0.049 4.049 4 C -0.023 4.023 5 C -0.119 4.119 6 C -0.070 4.070 7 N 0.545 4.455 8 O -0.413 6.413 9 O -0.353 6.353 10 C -0.175 4.175 11 C 0.143 3.857 12 O -0.207 6.207 13 C 0.185 3.815 14 H 0.066 0.934 15 C -0.597 4.597 16 H 0.085 0.915 17 C -0.156 4.156 18 N -0.489 5.489 19 Si 0.768 3.232 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.075 4.075 24 C -0.087 4.087 25 C -0.180 4.180 26 C -0.153 4.153 27 C -0.159 4.159 28 C -0.151 4.151 29 H 0.222 0.778 30 H 0.212 0.788 31 H 0.171 0.829 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.067 8.054 3.816 8.913 hybrid contribution 1.236 -1.666 -0.346 2.103 sum 1.170 6.388 3.471 7.363 Atomic orbital electron populations 1.81173 1.12870 1.09474 1.08434 1.25276 0.92313 0.92864 0.92874 1.15930 0.84608 1.07678 0.96670 1.21372 0.92013 0.93201 0.95730 1.21090 0.93929 0.99319 0.97527 1.21215 0.78105 1.07800 0.99866 1.43840 1.04316 0.97739 0.99605 1.94606 1.69273 1.49123 1.28275 1.94450 1.69812 1.44761 1.26233 1.20979 0.93487 1.02672 1.00396 1.19013 0.89354 0.88647 0.88667 1.86343 1.38390 1.71289 1.24689 1.19133 0.88145 0.94142 0.80117 0.93381 1.21527 0.93539 0.92805 1.51843 0.91477 1.25575 0.94946 1.01877 0.93184 1.69983 1.01609 1.32599 1.44739 0.85863 0.78061 0.80382 0.78944 1.19766 1.20945 1.19747 1.19842 0.94534 0.98573 0.94520 1.21644 0.93951 0.93146 0.99938 1.21373 0.99902 1.02995 0.93758 1.21281 0.95791 1.00705 0.97539 1.21167 0.94197 1.02331 0.98249 1.21041 1.00014 1.01630 0.92443 0.77836 0.78761 0.82902 0.92598 0.84815 0.86574 0.84433 0.83983 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.38 18.54 19.00 0.35 -16.03 16 2 C 0.28 9.26 14.87 88.33 1.31 10.57 16 3 C -0.04 -1.25 5.75 -21.21 -0.12 -1.38 16 4 C 0.00 -0.05 9.76 22.53 0.22 0.17 16 5 C -0.10 -1.86 9.53 22.24 0.21 -1.65 16 6 C 0.01 0.37 6.85 36.41 0.25 0.62 16 7 N 0.03 0.82 4.45 -46.38 -0.21 0.61 16 8 O -0.21 -7.38 18.43 18.88 0.35 -7.03 16 9 O -0.13 -3.48 18.43 18.89 0.35 -3.13 16 10 C -0.16 -5.18 8.19 22.33 0.18 -5.00 16 11 C 0.20 6.96 6.59 22.83 0.15 7.11 16 12 O -0.30 -12.91 7.78 -90.32 -0.70 -13.61 16 13 C 0.24 10.53 2.11 29.10 0.06 10.59 16 14 H 0.05 1.99 6.27 -2.39 -0.01 1.97 16 15 C -0.56 -27.09 7.92 25.60 0.20 -26.89 16 16 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 17 C 0.05 2.48 5.24 84.66 0.44 2.93 16 18 N -0.86 -43.42 8.50 21.45 0.18 -43.23 16 19 Si 0.94 40.54 29.54 68.60 2.03 42.57 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 C -0.07 -3.28 4.80 -19.86 -0.10 -3.38 16 24 C -0.07 -3.07 7.46 22.27 0.17 -2.91 16 25 C -0.16 -6.34 10.05 22.27 0.22 -6.12 16 26 C -0.14 -4.55 10.05 22.27 0.22 -4.33 16 27 C -0.14 -4.72 10.05 22.27 0.22 -4.49 16 28 C -0.13 -5.10 9.68 22.27 0.22 -4.89 16 29 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.20 2.24 7.59 -2.91 -0.02 2.22 16 31 H 0.15 5.70 5.20 -2.91 -0.02 5.69 16 32 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 33 H 0.13 6.81 5.50 -2.91 -0.02 6.80 16 34 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 35 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.12 4.21 8.06 -2.92 -0.02 4.19 16 Total: -1.00 -60.10 336.87 7.36 -52.74 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.14 Total: 16.14 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 3.87 Total: -29.04 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.33 Total: -58.65 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.01 Total: -23.76 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -60.10 7.36 -52.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228926913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.310 kcal (2) G-P(sol) polarization free energy of solvation -60.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds