Wall clock time and date at job start Tue Mar 31 2020 14:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39722 * 120.18991 * 116.83023 * 3 2 1 5 5 C 1.37820 * 119.89937 * 180.25112 * 4 3 2 6 6 C 1.38523 * 120.29448 * 359.76234 * 5 4 3 7 7 N 1.48018 * 119.80138 * 179.97438 * 6 5 4 8 8 O 1.21798 * 119.99547 * 180.02562 * 7 6 5 9 9 O 1.21796 * 120.00063 * 0.02562 * 7 6 5 10 10 C 1.38100 * 120.39602 * 0.02973 * 6 5 4 11 11 C 1.38654 * 120.08933 * 359.94606 * 10 6 5 12 12 O 1.35705 * 120.14990 * 180.02562 * 11 10 6 13 13 C 1.42906 * 116.99857 * 5.13454 * 12 11 10 14 14 H 1.09005 * 109.46528 * 35.88068 * 13 12 11 15 15 C 1.50699 * 109.47216 * 275.88061 * 13 12 11 16 16 H 1.07995 * 120.00275 * 333.72637 * 15 13 12 17 17 C 1.37881 * 119.99738 * 153.71806 * 15 13 12 18 18 N 1.31512 * 120.00008 * 353.75431 * 17 15 13 19 19 Si 1.86802 * 119.99683 * 173.74470 * 17 15 13 20 20 H 1.48499 * 109.47235 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46741 * 120.00907 * 19 17 15 22 22 H 1.48507 * 109.46821 * 240.00432 * 19 17 15 23 23 C 1.50698 * 109.47134 * 155.87981 * 13 12 11 24 24 C 1.38243 * 119.99528 * 37.82736 * 23 13 12 25 25 C 1.38234 * 119.99199 * 179.78992 * 24 23 13 26 26 C 1.38227 * 120.00650 * 0.43984 * 25 24 23 27 27 C 1.38245 * 119.99999 * 359.81290 * 26 25 24 28 28 C 1.38234 * 120.00106 * 218.10121 * 23 13 12 29 29 H 1.07994 * 120.04931 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.85286 * 179.73885 * 5 4 3 31 31 H 1.07994 * 119.95990 * 179.97438 * 10 6 5 32 32 H 0.97004 * 120.00429 * 5.06687 * 18 17 15 33 33 H 1.07995 * 120.00009 * 359.97438 * 24 23 13 34 34 H 1.08002 * 119.99894 * 180.27444 * 25 24 23 35 35 H 1.08004 * 120.00455 * 179.83674 * 26 25 24 36 36 H 1.07997 * 119.99918 * 180.02562 * 27 26 25 37 37 H 1.07995 * 119.99909 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.5461 -1.0777 5 6 4.6486 0.5388 -1.0738 6 6 5.3415 -0.0026 -0.0035 7 7 6.8217 -0.0051 -0.0110 8 8 7.4345 -0.4806 0.9280 9 8 7.4267 0.4683 -0.9561 10 6 4.6596 -0.5410 1.0699 11 6 3.2732 -0.5418 1.0831 12 8 2.6019 -1.0701 2.1376 13 6 3.3835 -1.5068 3.2513 14 1 4.2320 -0.8356 3.3851 15 6 3.8843 -2.9050 2.9962 16 1 3.3355 -3.5638 2.3396 17 6 5.0433 -3.3433 3.6010 18 7 5.7770 -2.5058 4.3009 19 14 5.5713 -5.1266 3.4262 20 1 4.5810 -5.8568 2.5947 21 1 6.9043 -5.1865 2.7747 22 1 5.6484 -5.7539 4.7701 23 6 2.5340 -1.4968 4.4960 24 6 1.2067 -1.8774 4.4299 25 6 0.4287 -1.8724 5.5725 26 6 0.9753 -1.4781 6.7793 27 6 2.3012 -1.0924 6.8444 28 6 3.0805 -1.1015 5.7027 29 1 2.7341 0.9693 -1.9141 30 1 5.1907 0.9568 -1.9091 31 1 5.2070 -0.9616 1.9005 32 1 5.4665 -1.5996 4.4535 33 1 0.7785 -2.1816 3.4863 34 1 -0.6072 -2.1740 5.5218 35 1 0.3666 -1.4716 7.6715 36 1 2.7284 -0.7847 7.7874 37 1 4.1164 -0.8003 5.7535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228926914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:38 Heat of formation + Delta-G solvation = 41.274187 kcal Electronic energy + Delta-G solvation = -26532.544810 eV Core-core repulsion = 22629.864163 eV Total energy + Delta-G solvation = -3902.680647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98062 -40.34191 -38.78106 -37.37318 -36.39727 -36.31016 -33.88137 -32.11060 -31.24797 -30.36163 -30.02111 -27.20865 -26.66234 -23.97775 -23.06356 -22.63735 -21.92636 -20.72827 -19.44844 -19.16854 -18.46953 -17.66998 -17.29835 -16.78235 -16.33085 -15.82010 -15.11400 -14.74053 -14.53148 -14.15754 -14.09947 -13.98340 -13.73707 -13.34733 -12.90077 -12.86121 -12.66243 -12.58479 -12.26273 -12.08960 -11.87094 -11.67600 -11.32171 -11.05495 -10.98610 -10.87678 -10.85509 -10.61429 -10.37722 -10.20471 -9.56052 -9.45554 -8.81000 -8.39448 -8.37519 -8.00573 -6.82662 -4.65233 -0.26358 1.02610 1.30802 1.54601 1.90393 1.94491 2.64420 2.77610 3.26591 3.28208 3.36026 3.43762 3.60963 3.73529 4.18902 4.37679 4.42920 4.66176 4.79680 4.89422 5.02458 5.33426 5.39165 5.40685 5.52254 5.55447 5.70497 5.77357 5.87972 5.96346 6.10300 6.14983 6.29751 6.50454 6.54403 6.58358 6.97893 6.98941 7.13937 7.31367 7.42427 7.53152 7.55197 7.85851 8.04557 8.30796 9.04198 10.50302 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.005741 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.296677 B = 4876.016955 C = 6647.048779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.267 3.733 3 C -0.041 4.041 4 C -0.036 4.036 5 C -0.118 4.118 6 C 0.019 3.981 7 N 0.022 4.978 8 O -0.135 6.135 9 O -0.167 6.167 10 C -0.130 4.130 11 C 0.217 3.783 12 O -0.296 6.296 13 C 0.221 3.779 14 H 0.051 0.949 15 C -0.622 4.622 16 H 0.069 0.931 17 C 0.040 3.960 18 N -0.875 5.875 19 Si 1.072 2.928 20 H -0.286 1.286 21 H -0.279 1.279 22 H -0.281 1.281 23 C -0.044 4.044 24 C -0.103 4.103 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.121 4.121 28 C -0.113 4.113 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.184 0.816 32 H 0.271 0.729 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 5.530 -4.598 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.049 4.049 3 C -0.046 4.046 4 C -0.057 4.057 5 C -0.138 4.138 6 C -0.065 4.065 7 N 0.543 4.457 8 O -0.356 6.356 9 O -0.380 6.380 10 C -0.150 4.150 11 C 0.163 3.837 12 O -0.207 6.207 13 C 0.168 3.832 14 H 0.068 0.932 15 C -0.659 4.659 16 H 0.088 0.912 17 C -0.169 4.169 18 N -0.508 5.508 19 Si 0.898 3.102 20 H -0.212 1.212 21 H -0.204 1.204 22 H -0.207 1.207 23 C -0.044 4.044 24 C -0.121 4.121 25 C -0.145 4.145 26 C -0.159 4.159 27 C -0.139 4.139 28 C -0.131 4.131 29 H 0.174 0.826 30 H 0.176 0.824 31 H 0.201 0.799 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.991 4.446 -4.167 7.877 hybrid contribution -0.199 0.780 -0.097 0.811 sum -5.190 5.226 -4.265 8.511 Atomic orbital electron populations 1.81196 1.11678 1.08203 1.07332 1.25063 0.92009 0.93917 0.93870 1.15630 0.85348 1.07399 0.96201 1.20828 0.92376 0.96167 0.96356 1.20645 0.93827 1.01167 0.98113 1.21076 0.79585 1.06768 0.99032 1.43649 1.03561 0.98386 1.00059 1.94667 1.68427 1.45350 1.27106 1.94483 1.69287 1.47114 1.27142 1.21460 0.93783 0.99529 1.00201 1.18604 0.88895 0.88448 0.87709 1.86063 1.38006 1.71563 1.25024 1.19551 0.88022 0.97167 0.78491 0.93157 1.22223 1.12610 0.97544 1.33502 0.91246 1.25935 0.92046 1.06139 0.92783 1.70872 1.37168 1.06584 1.36142 0.83475 0.76376 0.73347 0.76992 1.21151 1.20427 1.20723 1.20061 0.93746 0.95538 0.95101 1.20866 0.93734 0.99478 0.98052 1.21024 0.99370 1.01083 0.93039 1.20942 0.95559 1.02034 0.97383 1.20976 0.94177 1.00938 0.97832 1.20922 0.99744 1.00235 0.92196 0.82611 0.82444 0.79883 0.91692 0.86554 0.86960 0.87009 0.86700 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.81 18.54 41.84 0.78 -6.04 16 2 C 0.27 4.05 14.87 -22.47 -0.33 3.71 16 3 C -0.04 -0.58 5.75 -106.69 -0.61 -1.19 16 4 C -0.04 -0.38 9.76 -39.18 -0.38 -0.76 16 5 C -0.12 -1.37 9.53 -39.63 -0.38 -1.74 16 6 C 0.02 0.29 6.85 -79.89 -0.55 -0.26 16 7 N 0.02 0.39 4.45 33.99 0.15 0.54 16 8 O -0.13 -2.66 18.43 -29.46 -0.54 -3.21 16 9 O -0.17 -2.74 18.43 -29.46 -0.54 -3.28 16 10 C -0.13 -2.29 8.19 -39.48 -0.32 -2.61 16 11 C 0.22 3.72 6.59 -38.71 -0.26 3.46 16 12 O -0.30 -5.88 8.47 -18.82 -0.16 -6.04 16 13 C 0.22 4.76 1.67 -29.04 -0.05 4.72 16 14 H 0.05 1.12 4.63 -51.93 -0.24 0.88 16 15 C -0.62 -14.92 7.66 -34.44 -0.26 -15.18 16 16 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 17 C 0.04 0.98 5.45 -17.82 -0.10 0.88 16 18 N -0.87 -22.30 13.63 55.43 0.76 -21.54 16 19 Si 1.07 22.98 29.91 -169.99 -5.08 17.90 16 20 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.04 -0.91 4.97 -104.62 -0.52 -1.43 16 24 C -0.10 -2.02 9.36 -39.58 -0.37 -2.39 16 25 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 26 C -0.14 -2.26 10.05 -39.58 -0.40 -2.66 16 27 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 28 C -0.11 -2.21 9.47 -39.58 -0.37 -2.58 16 29 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.16 1.43 7.59 -52.49 -0.40 1.03 16 31 H 0.18 3.78 5.20 -52.49 -0.27 3.51 16 32 H 0.27 6.69 5.11 -40.82 -0.21 6.48 16 33 H 0.12 2.29 7.71 -52.49 -0.40 1.88 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.38 6.80 -52.49 -0.36 2.02 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -27.07 340.54 -8.00 -35.07 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -2.78 Total: 4.53 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -5.70 Total: -23.06 kcal Atomic # 7 Polarization: -28.72 SS G_CDS: 1.68 Total: -27.04 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.25 Total: -12.53 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.08 Total: 17.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.07 -8.00 -35.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228926914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.344 kcal (2) G-P(sol) polarization free energy of solvation -27.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds