Wall clock time and date at job start Tue Mar 31 2020 14:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39722 * 120.18991 * 116.83023 * 3 2 1 5 5 C 1.37820 * 119.89937 * 180.25112 * 4 3 2 6 6 C 1.38523 * 120.29448 * 359.76234 * 5 4 3 7 7 N 1.48018 * 119.80138 * 179.97438 * 6 5 4 8 8 O 1.21798 * 119.99547 * 180.02562 * 7 6 5 9 9 O 1.21796 * 120.00063 * 0.02562 * 7 6 5 10 10 C 1.38100 * 120.39602 * 0.02973 * 6 5 4 11 11 C 1.38654 * 120.08933 * 359.94606 * 10 6 5 12 12 O 1.35705 * 120.14990 * 180.02562 * 11 10 6 13 13 C 1.42906 * 116.99857 * 5.13454 * 12 11 10 14 14 H 1.09005 * 109.46528 * 35.88068 * 13 12 11 15 15 C 1.50699 * 109.47216 * 275.88061 * 13 12 11 16 16 H 1.07995 * 120.00275 * 333.72637 * 15 13 12 17 17 C 1.37881 * 119.99738 * 153.71806 * 15 13 12 18 18 N 1.31512 * 120.00008 * 353.75431 * 17 15 13 19 19 Si 1.86802 * 119.99683 * 173.74470 * 17 15 13 20 20 H 1.48499 * 109.47235 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46741 * 120.00907 * 19 17 15 22 22 H 1.48507 * 109.46821 * 240.00432 * 19 17 15 23 23 C 1.50698 * 109.47134 * 155.87981 * 13 12 11 24 24 C 1.38243 * 119.99528 * 37.82736 * 23 13 12 25 25 C 1.38234 * 119.99199 * 179.78992 * 24 23 13 26 26 C 1.38227 * 120.00650 * 0.43984 * 25 24 23 27 27 C 1.38245 * 119.99999 * 359.81290 * 26 25 24 28 28 C 1.38234 * 120.00106 * 218.10121 * 23 13 12 29 29 H 1.07994 * 120.04931 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.85286 * 179.73885 * 5 4 3 31 31 H 1.07994 * 119.95990 * 179.97438 * 10 6 5 32 32 H 0.97004 * 120.00429 * 5.06687 * 18 17 15 33 33 H 1.07995 * 120.00009 * 359.97438 * 24 23 13 34 34 H 1.08002 * 119.99894 * 180.27444 * 25 24 23 35 35 H 1.08004 * 120.00455 * 179.83674 * 26 25 24 36 36 H 1.07997 * 119.99918 * 180.02562 * 27 26 25 37 37 H 1.07995 * 119.99909 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.5461 -1.0777 5 6 4.6486 0.5388 -1.0738 6 6 5.3415 -0.0026 -0.0035 7 7 6.8217 -0.0051 -0.0110 8 8 7.4345 -0.4806 0.9280 9 8 7.4267 0.4683 -0.9561 10 6 4.6596 -0.5410 1.0699 11 6 3.2732 -0.5418 1.0831 12 8 2.6019 -1.0701 2.1376 13 6 3.3835 -1.5068 3.2513 14 1 4.2320 -0.8356 3.3851 15 6 3.8843 -2.9050 2.9962 16 1 3.3355 -3.5638 2.3396 17 6 5.0433 -3.3433 3.6010 18 7 5.7770 -2.5058 4.3009 19 14 5.5713 -5.1266 3.4262 20 1 4.5810 -5.8568 2.5947 21 1 6.9043 -5.1865 2.7747 22 1 5.6484 -5.7539 4.7701 23 6 2.5340 -1.4968 4.4960 24 6 1.2067 -1.8774 4.4299 25 6 0.4287 -1.8724 5.5725 26 6 0.9753 -1.4781 6.7793 27 6 2.3012 -1.0924 6.8444 28 6 3.0805 -1.1015 5.7027 29 1 2.7341 0.9693 -1.9141 30 1 5.1907 0.9568 -1.9091 31 1 5.2070 -0.9616 1.9005 32 1 5.4665 -1.5996 4.4535 33 1 0.7785 -2.1816 3.4863 34 1 -0.6072 -2.1740 5.5218 35 1 0.3666 -1.4716 7.6715 36 1 2.7284 -0.7847 7.7874 37 1 4.1164 -0.8003 5.7535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228926914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:37 Heat of formation + Delta-G solvation = 29.287143 kcal Electronic energy + Delta-G solvation = -26533.064607 eV Core-core repulsion = 22629.864163 eV Total energy + Delta-G solvation = -3903.200445 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.33794 -41.69323 -40.17161 -38.72746 -37.69965 -37.66146 -35.61034 -33.38126 -32.68859 -31.78559 -31.30731 -28.72763 -28.12068 -25.65311 -24.31203 -23.97713 -23.33193 -22.19178 -20.77594 -20.44909 -19.82577 -19.36207 -18.67120 -18.20398 -17.70470 -17.12392 -16.62333 -16.09618 -15.79887 -15.74109 -15.55475 -15.18314 -15.09545 -14.77402 -14.32364 -14.17637 -14.04797 -13.90717 -13.79497 -13.45428 -13.15313 -13.07738 -12.80961 -12.69382 -12.49714 -12.30185 -12.26406 -12.07199 -12.04926 -11.75093 -11.14234 -10.74976 -10.63689 -9.82056 -9.71002 -9.52367 -8.75437 -6.57502 -1.54510 -0.08359 -0.02643 0.26296 0.47412 0.50684 1.40022 1.47296 1.53110 1.55741 1.68812 1.99591 2.40480 2.44142 2.52514 2.89579 3.06171 3.33031 3.44254 3.58937 3.88142 3.95219 4.10861 4.18772 4.21661 4.28011 4.33305 4.54806 4.58839 4.71069 4.72463 4.83358 5.02293 5.08220 5.14835 5.25479 5.50210 5.57441 5.58654 5.72911 5.81499 6.12953 6.19410 6.29753 6.37872 6.45943 7.18103 8.57896 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.005741 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.296677 B = 4876.016955 C = 6647.048779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.281 3.719 3 C -0.028 4.028 4 C 0.000 4.000 5 C -0.086 4.086 6 C 0.010 3.990 7 N 0.024 4.976 8 O -0.232 6.232 9 O -0.100 6.100 10 C -0.155 4.155 11 C 0.186 3.814 12 O -0.312 6.312 13 C 0.233 3.767 14 H 0.032 0.968 15 C -0.623 4.623 16 H 0.050 0.950 17 C 0.002 3.998 18 N -0.900 5.900 19 Si 1.103 2.897 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.276 1.276 23 C -0.072 4.072 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.134 4.134 29 H 0.216 0.784 30 H 0.203 0.797 31 H 0.142 0.858 32 H 0.265 0.735 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 6.840 -6.589 10.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.034 4.034 3 C -0.033 4.033 4 C -0.021 4.021 5 C -0.105 4.105 6 C -0.074 4.074 7 N 0.542 4.458 8 O -0.429 6.429 9 O -0.335 6.335 10 C -0.175 4.175 11 C 0.134 3.866 12 O -0.224 6.224 13 C 0.179 3.821 14 H 0.049 0.951 15 C -0.660 4.660 16 H 0.068 0.932 17 C -0.202 4.202 18 N -0.534 5.534 19 Si 0.925 3.075 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.201 1.201 23 C -0.072 4.072 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.138 4.138 28 C -0.152 4.152 29 H 0.233 0.767 30 H 0.220 0.780 31 H 0.160 0.840 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.889 5.662 -5.964 10.728 hybrid contribution 0.298 0.601 0.220 0.706 sum -6.591 6.263 -5.743 10.754 Atomic orbital electron populations 1.81215 1.12437 1.08975 1.08120 1.25104 0.92009 0.93187 0.93119 1.15839 0.84850 1.06606 0.95988 1.21500 0.91745 0.92958 0.95862 1.21251 0.94203 0.98029 0.97002 1.21274 0.78262 1.07921 0.99914 1.43897 1.04412 0.97832 0.99638 1.94722 1.69311 1.50008 1.28834 1.94404 1.69889 1.43397 1.25798 1.21057 0.94012 1.01904 1.00491 1.18867 0.88960 0.90430 0.88296 1.85984 1.37930 1.72917 1.25564 1.19206 0.87928 0.95296 0.79644 0.95088 1.22251 1.12342 0.98488 1.32892 0.93153 1.26855 0.92430 1.08292 0.92578 1.70908 1.37839 1.06749 1.37952 0.83095 0.76297 0.70768 0.77301 1.20051 1.20370 1.20122 1.20126 0.94664 0.97430 0.95028 1.20908 0.93558 1.00557 0.98918 1.21403 1.00550 0.99847 0.92354 1.21415 0.95243 0.99707 0.98453 1.21345 0.94662 0.99936 0.97855 1.20985 0.99567 1.01531 0.93151 0.76743 0.78041 0.84049 0.92328 0.87656 0.83799 0.82760 0.83843 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -13.76 18.54 19.00 0.35 -13.41 16 2 C 0.28 8.01 14.87 88.33 1.31 9.33 16 3 C -0.03 -0.74 5.75 -21.21 -0.12 -0.86 16 4 C 0.00 -0.01 9.76 22.53 0.22 0.21 16 5 C -0.09 -1.59 9.53 22.24 0.21 -1.38 16 6 C 0.01 0.29 6.85 36.41 0.25 0.54 16 7 N 0.02 0.82 4.45 -46.38 -0.21 0.62 16 8 O -0.23 -10.02 18.43 18.89 0.35 -9.67 16 9 O -0.10 -3.02 18.43 18.89 0.35 -2.67 16 10 C -0.15 -5.81 8.19 22.34 0.18 -5.63 16 11 C 0.19 6.63 6.59 22.84 0.15 6.78 16 12 O -0.31 -13.28 8.47 -90.26 -0.76 -14.04 16 13 C 0.23 10.96 1.67 29.10 0.05 11.01 16 14 H 0.03 1.57 4.63 -2.38 -0.01 1.56 16 15 C -0.62 -32.25 7.66 25.60 0.20 -32.06 16 16 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 17 C 0.00 0.13 5.45 84.66 0.46 0.59 16 18 N -0.90 -49.69 13.63 21.45 0.29 -49.40 16 19 Si 1.10 48.64 29.91 68.60 2.05 50.70 16 20 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 C -0.07 -3.18 4.97 -19.86 -0.10 -3.28 16 24 C -0.12 -4.87 9.36 22.27 0.21 -4.66 16 25 C -0.12 -4.01 10.05 22.27 0.22 -3.79 16 26 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 27 C -0.12 -3.99 10.05 22.27 0.22 -3.77 16 28 C -0.13 -5.53 9.47 22.27 0.21 -5.32 16 29 H 0.22 1.08 8.06 -2.91 -0.02 1.06 16 30 H 0.20 2.14 7.59 -2.91 -0.02 2.12 16 31 H 0.14 6.63 5.20 -2.91 -0.02 6.61 16 32 H 0.27 14.50 5.11 -92.71 -0.47 14.03 16 33 H 0.11 4.34 7.71 -2.91 -0.02 4.32 16 34 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.10 4.53 6.80 -2.91 -0.02 4.51 16 Total: -1.00 -67.22 340.54 7.77 -59.46 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.44 Total: 14.32 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 3.90 Total: -35.90 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.44 Total: -62.20 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.07 Total: -26.38 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.05 Total: 50.70 kcal Total: -67.22 7.77 -59.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228926914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.745 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds