Wall clock time and date at job start Tue Mar 31 2020 14:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39668 * 120.12675 * 278.04395 * 3 2 1 5 5 C 1.37956 * 119.96020 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.20871 * 359.72301 * 5 4 3 7 7 N 1.48024 * 119.87190 * 180.27541 * 6 5 4 8 8 O 1.21796 * 120.00326 * 0.27505 * 7 6 5 9 9 O 1.21804 * 119.99844 * 180.27536 * 7 6 5 10 10 C 1.38819 * 120.25602 * 0.55395 * 6 5 4 11 11 O 1.35912 * 119.98581 * 179.72248 * 10 6 5 12 12 C 1.42897 * 116.99860 * 174.13952 * 11 10 6 13 13 H 1.08994 * 109.47516 * 324.93856 * 12 11 10 14 14 C 1.50705 * 109.46745 * 84.93869 * 12 11 10 15 15 H 1.07998 * 119.99797 * 33.63773 * 14 12 11 16 16 C 1.37878 * 119.99943 * 213.63513 * 14 12 11 17 17 N 1.31510 * 119.99775 * 352.97693 * 16 14 12 18 18 Si 1.86802 * 119.99961 * 172.97903 * 16 14 12 19 19 H 1.48500 * 109.47065 * 60.00107 * 18 16 14 20 20 H 1.48503 * 109.46968 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46989 * 300.00154 * 18 16 14 22 22 C 1.50706 * 109.46899 * 204.93359 * 12 11 10 23 23 C 1.38231 * 120.00187 * 321.26105 * 22 12 11 24 24 C 1.38233 * 120.00102 * 179.78574 * 23 22 12 25 25 C 1.38237 * 119.99689 * 0.44148 * 24 23 22 26 26 C 1.38233 * 119.99981 * 359.81385 * 25 24 23 27 27 C 1.38229 * 120.00383 * 359.97438 * 26 25 24 28 28 C 1.38477 * 120.03260 * 359.44609 * 10 6 5 29 29 H 1.07998 * 120.01766 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.89636 * 180.02562 * 5 4 3 31 31 H 0.97002 * 120.00386 * 4.74091 * 17 16 14 32 32 H 1.08001 * 119.99806 * 359.97438 * 23 22 12 33 33 H 1.07997 * 120.00199 * 180.27351 * 24 23 22 34 34 H 1.07998 * 119.99951 * 179.83096 * 25 24 23 35 35 H 1.08005 * 120.00207 * 179.97438 * 26 25 24 36 36 H 1.08004 * 120.00602 * 180.02562 * 27 26 25 37 37 H 1.07998 * 120.10649 * 180.25363 * 28 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.1681 1.1961 5 6 4.6486 -0.1674 1.1921 6 6 5.3409 -0.0059 0.0059 7 7 6.8211 -0.0125 0.0093 8 8 7.4270 -0.1650 1.0548 9 8 7.4332 0.1347 -1.0334 10 6 4.6530 0.1683 -1.1873 11 8 5.3389 0.3322 -2.3491 12 6 4.5724 0.3770 -3.5542 13 1 3.7208 -0.2978 -3.4685 14 6 4.0787 1.7823 -3.7834 15 1 4.6842 2.6236 -3.4802 16 6 2.8540 1.9940 -4.3804 17 7 2.1790 0.9790 -4.8742 18 14 2.1536 3.7224 -4.4878 19 1 3.0829 4.5860 -5.2596 20 1 0.8347 3.6805 -5.1692 21 1 1.9859 4.2744 -3.1195 22 6 5.4352 -0.0478 -4.7145 23 6 6.7593 0.3450 -4.7714 24 6 7.5520 -0.0483 -5.8334 25 6 7.0180 -0.8270 -6.8431 26 6 5.6925 -1.2154 -6.7888 27 6 4.9010 -0.8257 -5.7246 28 6 3.2683 0.1693 -1.1952 29 1 2.7315 -0.2998 2.1235 30 1 5.1897 -0.2984 2.1175 31 1 2.5093 0.0744 -4.7580 32 1 7.1754 0.9568 -3.9846 33 1 8.5876 0.2549 -5.8756 34 1 7.6365 -1.1320 -7.6742 35 1 5.2751 -1.8234 -7.5779 36 1 3.8654 -1.1295 -5.6820 37 1 2.7319 0.3005 -2.1233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229188726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:58 Heat of formation + Delta-G solvation = 29.425002 kcal Electronic energy + Delta-G solvation = -26739.134252 eV Core-core repulsion = 22835.939786 eV Total energy + Delta-G solvation = -3903.194467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.19371 -41.53105 -40.13591 -38.94201 -37.64147 -37.42941 -35.60034 -33.37296 -32.66739 -31.71545 -31.28410 -28.55086 -28.06756 -25.68811 -24.28815 -23.95971 -23.30871 -22.06257 -20.73852 -20.42037 -19.63833 -19.41879 -18.53713 -18.15094 -17.54083 -17.00150 -16.53853 -16.05750 -15.75939 -15.69160 -15.50692 -15.24513 -15.23240 -14.79044 -14.44868 -14.18135 -14.11765 -13.91859 -13.77417 -13.37507 -13.03534 -12.91883 -12.72031 -12.58263 -12.46393 -12.12939 -12.08934 -12.07529 -11.95465 -11.64891 -11.11010 -10.77969 -10.71554 -9.74262 -9.69285 -9.48902 -8.78944 -6.60204 -1.42592 -0.05525 0.04134 0.42509 0.54360 0.59249 1.30238 1.46215 1.48584 1.52999 1.69691 2.01445 2.37972 2.39500 2.43962 2.92238 3.06616 3.24194 3.63463 3.68619 3.72926 4.00789 4.15398 4.23991 4.29142 4.32665 4.40588 4.51774 4.65694 4.78776 4.80141 4.88267 5.11930 5.14741 5.22553 5.34364 5.52249 5.63640 5.66976 5.78839 5.85200 6.10604 6.19807 6.28393 6.36477 6.64934 7.15170 8.53982 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.008696 B = 0.006358 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.992103 B = 4402.613298 C = 6467.944770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.270 3.730 3 C 0.068 3.932 4 C -0.092 4.092 5 C -0.004 4.004 6 C -0.087 4.087 7 N 0.039 4.961 8 O -0.148 6.148 9 O -0.203 6.203 10 C 0.202 3.798 11 O -0.291 6.291 12 C 0.226 3.774 13 H 0.038 0.962 14 C -0.615 4.615 15 H 0.050 0.950 16 C 0.003 3.997 17 N -0.906 5.906 18 Si 1.096 2.904 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.072 4.072 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.124 4.124 27 C -0.135 4.135 28 C -0.168 4.168 29 H 0.205 0.795 30 H 0.204 0.796 31 H 0.266 0.734 32 H 0.109 0.891 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -4.169 8.228 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.046 4.046 3 C 0.064 3.936 4 C -0.113 4.113 5 C -0.022 4.022 6 C -0.173 4.173 7 N 0.553 4.447 8 O -0.369 6.369 9 O -0.408 6.408 10 C 0.151 3.849 11 O -0.202 6.202 12 C 0.172 3.828 13 H 0.056 0.944 14 C -0.652 4.652 15 H 0.068 0.932 16 C -0.200 4.200 17 N -0.541 5.541 18 Si 0.918 3.082 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.195 1.195 22 C -0.073 4.073 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.142 4.142 27 C -0.153 4.153 28 C -0.190 4.190 29 H 0.222 0.778 30 H 0.221 0.779 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.160 0.840 36 H 0.122 0.878 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.241 -3.270 7.465 8.243 hybrid contribution 1.702 -0.637 -0.075 1.819 sum 2.944 -3.906 7.389 8.862 Atomic orbital electron populations 1.81265 1.12606 1.07900 1.07862 1.25440 0.92337 0.93674 0.93159 1.16120 0.84294 0.98692 0.94458 1.21422 0.91898 1.00207 0.97742 1.21220 0.94098 0.90964 0.95964 1.21048 0.78791 1.21754 0.95665 1.43534 1.03798 0.97246 1.00131 1.94409 1.69618 1.51741 1.21100 1.94672 1.69226 1.55256 1.21612 1.18678 0.90549 0.89209 0.86492 1.86320 1.37396 1.83025 1.13410 1.19282 0.88425 0.97039 0.78013 0.94414 1.22235 1.05628 0.91385 1.45948 0.93153 1.26860 0.93680 1.08010 0.91485 1.70984 1.43016 1.00284 1.39861 0.83176 0.76181 0.70995 0.77814 1.19903 1.20571 1.19457 1.20079 0.94763 0.95664 0.96788 1.20982 0.93482 0.99997 0.98853 1.21414 1.00517 0.98443 0.93837 1.21403 0.95330 0.98715 0.99452 1.21309 0.94623 1.00541 0.97682 1.20950 0.99491 0.99161 0.95715 1.21399 0.91983 1.05478 1.00169 0.77843 0.77901 0.92241 0.87292 0.83805 0.82892 0.83983 0.87759 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.49 18.54 19.00 0.35 -13.14 16 2 C 0.27 7.58 15.33 88.33 1.35 8.93 16 3 C 0.07 1.73 5.73 -21.37 -0.12 1.61 16 4 C -0.09 -1.51 9.75 22.55 0.22 -1.29 16 5 C 0.00 -0.08 9.53 22.21 0.21 0.14 16 6 C -0.09 -2.65 6.87 36.53 0.25 -2.40 16 7 N 0.04 1.36 4.45 -46.10 -0.21 1.16 16 8 O -0.15 -4.59 18.43 18.89 0.35 -4.24 16 9 O -0.20 -8.36 17.22 25.63 0.44 -7.92 16 10 C 0.20 7.47 6.57 22.47 0.15 7.61 16 11 O -0.29 -12.86 7.06 -71.32 -0.50 -13.36 16 12 C 0.23 10.58 1.67 29.11 0.05 10.62 16 13 H 0.04 1.83 4.60 -2.39 -0.01 1.82 16 14 C -0.61 -31.29 7.75 25.60 0.20 -31.09 16 15 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 16 C 0.00 0.15 5.27 84.66 0.45 0.60 16 17 N -0.91 -48.22 13.62 21.45 0.29 -47.93 16 18 Si 1.10 46.73 29.91 68.60 2.05 48.79 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 22 C -0.07 -3.24 4.96 -19.86 -0.10 -3.34 16 23 C -0.11 -4.77 9.36 22.27 0.21 -4.56 16 24 C -0.12 -4.17 10.05 22.27 0.22 -3.95 16 25 C -0.13 -3.98 10.05 22.27 0.22 -3.75 16 26 C -0.12 -4.17 10.05 22.27 0.22 -3.94 16 27 C -0.13 -5.58 9.45 22.27 0.21 -5.37 16 28 C -0.17 -5.82 8.41 22.64 0.19 -5.63 16 29 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.20 2.30 7.60 -2.91 -0.02 2.27 16 31 H 0.27 13.96 5.11 -92.71 -0.47 13.48 16 32 H 0.11 4.74 7.74 -2.91 -0.02 4.72 16 33 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 34 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.10 4.46 6.80 -2.91 -0.02 4.44 16 37 H 0.14 5.82 5.53 -2.91 -0.02 5.80 16 Total: -1.00 -64.98 338.77 8.15 -56.83 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.44 Total: 15.63 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.94 Total: -35.81 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.44 Total: -59.91 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.29 Total: -25.53 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.05 Total: 48.79 kcal Total: -64.98 8.15 -56.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229188726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.252 kcal (2) G-P(sol) polarization free energy of solvation -64.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds