Wall clock time and date at job start Tue Mar 31 2020 14:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39666 * 120.12730 * 227.81482 * 3 2 1 5 5 C 1.37951 * 119.96223 * 179.74631 * 4 3 2 6 6 C 1.38283 * 120.21352 * 0.53654 * 5 4 3 7 7 N 1.48015 * 119.87761 * 179.75944 * 6 5 4 8 8 O 1.21800 * 119.99846 * 359.97438 * 7 6 5 9 9 O 1.21806 * 120.00299 * 179.97438 * 7 6 5 10 10 C 1.38827 * 120.25076 * 359.74225 * 6 5 4 11 11 O 1.35904 * 119.98291 * 179.97438 * 10 6 5 12 12 C 1.42902 * 117.00183 * 185.22471 * 11 10 6 13 13 H 1.09006 * 109.46710 * 35.36252 * 12 11 10 14 14 C 1.50698 * 109.47149 * 275.36392 * 12 11 10 15 15 H 1.08000 * 119.99721 * 327.88257 * 14 12 11 16 16 C 1.37873 * 120.00193 * 147.89069 * 14 12 11 17 17 N 1.31513 * 120.00515 * 185.46720 * 16 14 12 18 18 Si 1.86800 * 119.99862 * 5.46523 * 16 14 12 19 19 H 1.48498 * 109.47385 * 84.84590 * 18 16 14 20 20 H 1.48506 * 109.47219 * 204.84429 * 18 16 14 21 21 H 1.48505 * 109.47266 * 324.84359 * 18 16 14 22 22 C 1.50702 * 109.47282 * 155.35872 * 12 11 10 23 23 C 1.38231 * 119.99856 * 36.30248 * 22 12 11 24 24 C 1.38234 * 119.99901 * 179.81079 * 23 22 12 25 25 C 1.38230 * 120.00016 * 0.39432 * 24 23 22 26 26 C 1.38233 * 120.00067 * 359.85652 * 25 24 23 27 27 C 1.38230 * 120.00062 * 216.57544 * 22 12 11 28 28 C 1.38485 * 120.03356 * 359.97438 * 10 6 5 29 29 H 1.08003 * 120.01505 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.89337 * 180.27983 * 5 4 3 31 31 H 0.96994 * 120.00656 * 179.97438 * 17 16 14 32 32 H 1.08004 * 119.99777 * 359.97438 * 23 22 12 33 33 H 1.08004 * 119.99665 * 180.22944 * 24 23 22 34 34 H 1.08000 * 120.00257 * 179.83808 * 25 24 23 35 35 H 1.08001 * 120.00146 * 179.97438 * 26 25 24 36 36 H 1.08003 * 120.00127 * 359.97438 * 27 22 12 37 37 H 1.07996 * 120.10070 * 180.02562 * 28 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2686 0.8122 0.8951 5 6 4.6481 0.8062 0.8957 6 6 5.3409 0.0071 0.0048 7 7 6.8211 0.0105 0.0084 8 8 7.4265 0.7166 0.7947 9 8 7.4336 -0.6929 -0.7750 10 6 4.6535 -0.7987 -0.8926 11 8 5.3398 -1.5815 -1.7661 12 6 4.5731 -2.2972 -2.7367 13 1 3.7202 -1.6919 -3.0441 14 6 4.0818 -3.5889 -2.1358 15 1 4.6778 -4.1006 -1.3946 16 6 2.8718 -4.1175 -2.5323 17 7 2.3923 -5.1852 -1.9326 18 14 1.9132 -3.3170 -3.9215 19 1 2.4069 -3.8313 -5.2242 20 1 0.4706 -3.6385 -3.7770 21 1 2.1000 -1.8447 -3.8678 22 6 5.4348 -2.5967 -3.9362 23 6 6.7722 -2.9025 -3.7674 24 6 7.5617 -3.1811 -4.8674 25 6 7.0157 -3.1460 -6.1368 26 6 5.6794 -2.8352 -6.3060 27 6 4.8890 -2.5603 -5.2057 28 6 3.2686 -0.8051 -0.8983 29 1 2.7306 1.4406 1.5894 30 1 5.1887 1.4307 1.5914 31 1 1.5408 -5.5568 -2.2113 32 1 7.1997 -2.9263 -2.7758 33 1 8.6058 -3.4236 -4.7351 34 1 7.6331 -3.3611 -6.9964 35 1 5.2529 -2.8073 -7.2978 36 1 3.8450 -2.3175 -5.3380 37 1 2.7328 -1.4318 -1.5957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229188727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:01 Heat of formation + Delta-G solvation = 51.070201 kcal Electronic energy + Delta-G solvation = -26786.578038 eV Core-core repulsion = 22884.322177 eV Total energy + Delta-G solvation = -3902.255860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84812 -40.21845 -38.83183 -37.65298 -36.41382 -36.04725 -33.49830 -32.17622 -31.58138 -30.46969 -30.09217 -27.68193 -26.77694 -23.94566 -23.02684 -22.58857 -22.08781 -20.44547 -19.41764 -19.10848 -18.30704 -17.67145 -17.14525 -16.87645 -16.31786 -15.79875 -15.26830 -14.80674 -14.54179 -14.37831 -14.16805 -14.07494 -13.75223 -13.37175 -13.13971 -13.00445 -12.80925 -12.67963 -12.47146 -12.02521 -11.99433 -11.59591 -11.32960 -11.16639 -11.05454 -10.74813 -10.71520 -10.60588 -10.32560 -10.07620 -9.87460 -9.55373 -9.11706 -8.46116 -8.37333 -8.05792 -6.60621 -4.66637 -0.17869 1.06370 1.34640 1.71563 1.87779 1.95269 2.46751 2.71570 2.82403 2.93973 3.02032 3.28636 3.52293 3.59661 3.88572 4.33058 4.41352 4.68574 4.71723 4.82452 4.88445 5.34069 5.37822 5.40553 5.49690 5.56798 5.62557 5.69462 5.90086 5.91681 6.06811 6.15561 6.24116 6.45614 6.56908 6.69344 6.87457 6.94485 7.03317 7.14863 7.25830 7.48307 7.53575 7.95079 8.05332 8.51192 8.93967 10.50016 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.006543 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.694043 B = 4278.240459 C = 6417.909163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.253 3.747 3 C 0.059 3.941 4 C -0.129 4.129 5 C -0.024 4.024 6 C -0.079 4.079 7 N 0.039 4.961 8 O -0.195 6.195 9 O -0.127 6.127 10 C 0.236 3.764 11 O -0.267 6.267 12 C 0.199 3.801 13 H 0.054 0.946 14 C -0.540 4.540 15 H 0.095 0.905 16 C 0.091 3.909 17 N -0.862 5.862 18 Si 0.846 3.154 19 H -0.255 1.255 20 H -0.278 1.278 21 H -0.260 1.260 22 C -0.046 4.046 23 C -0.090 4.090 24 C -0.121 4.121 25 C -0.138 4.138 26 C -0.122 4.122 27 C -0.131 4.131 28 C -0.150 4.150 29 H 0.151 0.849 30 H 0.163 0.837 31 H 0.274 0.726 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 9.946 -0.513 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.063 4.063 3 C 0.055 3.945 4 C -0.150 4.150 5 C -0.043 4.043 6 C -0.165 4.165 7 N 0.556 4.444 8 O -0.401 6.401 9 O -0.350 6.350 10 C 0.183 3.817 11 O -0.176 6.176 12 C 0.145 3.855 13 H 0.071 0.929 14 C -0.576 4.576 15 H 0.113 0.887 16 C -0.117 4.117 17 N -0.496 5.496 18 Si 0.672 3.328 19 H -0.179 1.179 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.046 4.046 23 C -0.108 4.108 24 C -0.139 4.139 25 C -0.156 4.156 26 C -0.140 4.140 27 C -0.149 4.149 28 C -0.172 4.172 29 H 0.169 0.831 30 H 0.180 0.820 31 H 0.085 0.915 32 H 0.149 0.851 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.292 9.762 -0.492 9.859 hybrid contribution -0.138 -0.103 -0.871 0.888 sum 1.154 9.659 -1.363 9.823 Atomic orbital electron populations 1.81244 1.11743 1.07064 1.06915 1.25432 0.92402 0.94209 0.94299 1.16046 0.84861 0.96910 0.96638 1.20859 0.92510 1.01214 1.00463 1.20647 0.93725 0.94918 0.95025 1.20706 0.79990 1.09218 1.06586 1.43269 1.02932 0.98928 0.99256 1.94477 1.69077 1.40148 1.36363 1.94625 1.68366 1.37636 1.34392 1.18387 0.89899 0.85981 0.87443 1.86362 1.36697 1.53605 1.40890 1.19881 0.89155 0.93042 0.83442 0.92876 1.21167 1.05123 1.06047 1.25297 0.88736 1.24874 0.96429 0.94885 0.95481 1.69826 1.19669 1.21021 1.39122 0.87487 0.80385 0.80268 0.84633 1.17923 1.20392 1.18566 1.19939 0.94282 0.97314 0.93112 1.21013 0.93079 0.97488 0.99261 1.21105 0.99588 1.00529 0.92719 1.20960 0.95221 1.02423 0.97045 1.20895 0.94222 1.00962 0.97886 1.20852 0.99298 1.02508 0.92227 1.21657 0.92382 1.01161 1.01984 0.83105 0.82000 0.91504 0.85124 0.86494 0.86875 0.86812 0.87352 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.37 18.54 41.84 0.78 -5.59 16 2 C 0.25 3.64 15.33 -22.48 -0.34 3.29 16 3 C 0.06 0.79 5.73 -106.96 -0.61 0.17 16 4 C -0.13 -1.33 9.75 -39.15 -0.38 -1.71 16 5 C -0.02 -0.28 9.53 -39.67 -0.38 -0.65 16 6 C -0.08 -1.22 6.87 -79.71 -0.55 -1.77 16 7 N 0.04 0.67 4.45 34.08 0.15 0.82 16 8 O -0.20 -3.23 18.43 -29.46 -0.54 -3.77 16 9 O -0.13 -2.41 17.22 -36.52 -0.63 -3.04 16 10 C 0.24 4.10 6.57 -39.27 -0.26 3.84 16 11 O -0.27 -5.30 6.97 -41.64 -0.29 -5.59 16 12 C 0.20 4.16 1.57 -29.03 -0.05 4.12 16 13 H 0.05 1.09 3.46 -51.93 -0.18 0.91 16 14 C -0.54 -13.18 8.28 -34.44 -0.29 -13.47 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 16 C 0.09 2.28 5.37 -17.82 -0.10 2.18 16 17 N -0.86 -23.35 13.96 55.43 0.77 -22.58 16 18 Si 0.85 18.34 23.46 -169.99 -3.99 14.35 16 19 H -0.25 -5.40 6.74 56.52 0.38 -5.02 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.26 -5.13 6.05 56.52 0.34 -4.79 16 22 C -0.05 -0.92 4.92 -104.63 -0.51 -1.44 16 23 C -0.09 -1.70 9.35 -39.59 -0.37 -2.07 16 24 C -0.12 -1.96 10.05 -39.59 -0.40 -2.36 16 25 C -0.14 -2.11 10.05 -39.59 -0.40 -2.51 16 26 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 27 C -0.13 -2.47 8.63 -39.58 -0.34 -2.81 16 28 C -0.15 -2.46 8.41 -39.01 -0.33 -2.78 16 29 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.16 1.42 7.60 -52.49 -0.40 1.02 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.13 2.49 7.67 -52.48 -0.40 2.08 16 33 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.11 2.02 5.02 -52.48 -0.26 1.75 16 37 H 0.17 3.06 4.78 -52.49 -0.25 2.81 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -27.78 330.51 -7.29 -35.07 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.82 Total: 5.70 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -5.70 Total: -20.36 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 1.70 Total: -27.35 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.46 Total: -12.39 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -3.99 Total: 14.35 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.78 -7.29 -35.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229188727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.140 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds