Wall clock time and date at job start Tue Mar 31 2020 14:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39666 * 120.12730 * 227.81482 * 3 2 1 5 5 C 1.37951 * 119.96223 * 179.74631 * 4 3 2 6 6 C 1.38283 * 120.21352 * 0.53654 * 5 4 3 7 7 N 1.48015 * 119.87761 * 179.75944 * 6 5 4 8 8 O 1.21800 * 119.99846 * 359.97438 * 7 6 5 9 9 O 1.21806 * 120.00299 * 179.97438 * 7 6 5 10 10 C 1.38827 * 120.25076 * 359.74225 * 6 5 4 11 11 O 1.35904 * 119.98291 * 179.97438 * 10 6 5 12 12 C 1.42902 * 117.00183 * 185.22471 * 11 10 6 13 13 H 1.09006 * 109.46710 * 35.36252 * 12 11 10 14 14 C 1.50698 * 109.47149 * 275.36392 * 12 11 10 15 15 H 1.08000 * 119.99721 * 327.88257 * 14 12 11 16 16 C 1.37873 * 120.00193 * 147.89069 * 14 12 11 17 17 N 1.31513 * 120.00515 * 185.46720 * 16 14 12 18 18 Si 1.86800 * 119.99862 * 5.46523 * 16 14 12 19 19 H 1.48498 * 109.47385 * 84.84590 * 18 16 14 20 20 H 1.48506 * 109.47219 * 204.84429 * 18 16 14 21 21 H 1.48505 * 109.47266 * 324.84359 * 18 16 14 22 22 C 1.50702 * 109.47282 * 155.35872 * 12 11 10 23 23 C 1.38231 * 119.99856 * 36.30248 * 22 12 11 24 24 C 1.38234 * 119.99901 * 179.81079 * 23 22 12 25 25 C 1.38230 * 120.00016 * 0.39432 * 24 23 22 26 26 C 1.38233 * 120.00067 * 359.85652 * 25 24 23 27 27 C 1.38230 * 120.00062 * 216.57544 * 22 12 11 28 28 C 1.38485 * 120.03356 * 359.97438 * 10 6 5 29 29 H 1.08003 * 120.01505 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.89337 * 180.27983 * 5 4 3 31 31 H 0.96994 * 120.00656 * 179.97438 * 17 16 14 32 32 H 1.08004 * 119.99777 * 359.97438 * 23 22 12 33 33 H 1.08004 * 119.99665 * 180.22944 * 24 23 22 34 34 H 1.08000 * 120.00257 * 179.83808 * 25 24 23 35 35 H 1.08001 * 120.00146 * 179.97438 * 26 25 24 36 36 H 1.08003 * 120.00127 * 359.97438 * 27 22 12 37 37 H 1.07996 * 120.10070 * 180.02562 * 28 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2686 0.8122 0.8951 5 6 4.6481 0.8062 0.8957 6 6 5.3409 0.0071 0.0048 7 7 6.8211 0.0105 0.0084 8 8 7.4265 0.7166 0.7947 9 8 7.4336 -0.6929 -0.7750 10 6 4.6535 -0.7987 -0.8926 11 8 5.3398 -1.5815 -1.7661 12 6 4.5731 -2.2972 -2.7367 13 1 3.7202 -1.6919 -3.0441 14 6 4.0818 -3.5889 -2.1358 15 1 4.6778 -4.1006 -1.3946 16 6 2.8718 -4.1175 -2.5323 17 7 2.3923 -5.1852 -1.9326 18 14 1.9132 -3.3170 -3.9215 19 1 2.4069 -3.8313 -5.2242 20 1 0.4706 -3.6385 -3.7770 21 1 2.1000 -1.8447 -3.8678 22 6 5.4348 -2.5967 -3.9362 23 6 6.7722 -2.9025 -3.7674 24 6 7.5617 -3.1811 -4.8674 25 6 7.0157 -3.1460 -6.1368 26 6 5.6794 -2.8352 -6.3060 27 6 4.8890 -2.5603 -5.2057 28 6 3.2686 -0.8051 -0.8983 29 1 2.7306 1.4406 1.5894 30 1 5.1887 1.4307 1.5914 31 1 1.5408 -5.5568 -2.2113 32 1 7.1997 -2.9263 -2.7758 33 1 8.6058 -3.4236 -4.7351 34 1 7.6331 -3.3611 -6.9964 35 1 5.2529 -2.8073 -7.2978 36 1 3.8450 -2.3175 -5.3380 37 1 2.7328 -1.4318 -1.5957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229188727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:01 Heat of formation + Delta-G solvation = 37.163328 kcal Electronic energy + Delta-G solvation = -26787.181085 eV Core-core repulsion = 22884.322177 eV Total energy + Delta-G solvation = -3902.858908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.16893 -41.54328 -40.14807 -38.95840 -37.64273 -37.40030 -35.26114 -33.52750 -32.97284 -31.79389 -31.32486 -29.31801 -28.05485 -25.52218 -24.28288 -23.88044 -23.41237 -21.85275 -20.67397 -20.41077 -19.61126 -19.48315 -18.49600 -18.26964 -17.65566 -17.01676 -16.83493 -16.19232 -15.80465 -15.70584 -15.44888 -15.23431 -15.10020 -14.94882 -14.66546 -14.26552 -14.19921 -13.95333 -13.80363 -13.42796 -13.28327 -12.91028 -12.77907 -12.60916 -12.54540 -12.15118 -12.09577 -12.04414 -11.92834 -11.68219 -11.46441 -11.00375 -10.72567 -9.74633 -9.68989 -9.48792 -8.55258 -6.64538 -1.40970 -0.05017 0.06308 0.44443 0.51543 0.59123 1.09162 1.17399 1.24199 1.28767 1.53268 1.97405 2.05863 2.36012 2.44742 2.76804 3.02945 3.23559 3.62760 3.68444 3.73113 3.94875 4.08509 4.20550 4.25306 4.32203 4.40617 4.51682 4.64404 4.75706 4.80766 4.87389 5.00982 5.12807 5.17445 5.23072 5.37360 5.61284 5.68711 5.74885 5.85215 6.09376 6.15601 6.23393 6.47918 6.67803 7.00727 8.59586 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.006543 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.694043 B = 4278.240459 C = 6417.909163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.271 3.729 3 C 0.067 3.933 4 C -0.090 4.090 5 C -0.003 4.003 6 C -0.084 4.084 7 N 0.038 4.962 8 O -0.150 6.150 9 O -0.198 6.198 10 C 0.202 3.798 11 O -0.285 6.285 12 C 0.211 3.789 13 H 0.057 0.943 14 C -0.533 4.533 15 H 0.044 0.956 16 C 0.047 3.953 17 N -0.916 5.916 18 Si 0.893 3.107 19 H -0.242 1.242 20 H -0.284 1.284 21 H -0.234 1.234 22 C -0.076 4.076 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.150 4.150 28 C -0.171 4.171 29 H 0.205 0.795 30 H 0.204 0.796 31 H 0.274 0.726 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.108 0.892 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 13.016 -0.837 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.045 4.045 3 C 0.064 3.936 4 C -0.111 4.111 5 C -0.022 4.022 6 C -0.170 4.170 7 N 0.552 4.448 8 O -0.370 6.370 9 O -0.404 6.404 10 C 0.151 3.849 11 O -0.195 6.195 12 C 0.156 3.844 13 H 0.074 0.926 14 C -0.570 4.570 15 H 0.062 0.938 16 C -0.156 4.156 17 N -0.553 5.553 18 Si 0.717 3.283 19 H -0.166 1.166 20 H -0.210 1.210 21 H -0.158 1.158 22 C -0.077 4.077 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.168 4.168 28 C -0.193 4.193 29 H 0.222 0.778 30 H 0.221 0.779 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.126 0.874 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.604 12.752 -0.937 12.886 hybrid contribution -0.117 -0.861 -0.527 1.016 sum 1.488 11.891 -1.464 12.073 Atomic orbital electron populations 1.81271 1.12603 1.08031 1.07853 1.25443 0.92331 0.93320 0.93427 1.16108 0.84280 0.96774 0.96486 1.21430 0.91918 0.99042 0.98713 1.21230 0.94099 0.93241 0.93598 1.21036 0.78874 1.09840 1.07238 1.43524 1.03764 0.98552 0.98913 1.94416 1.69623 1.38217 1.34717 1.94668 1.69149 1.40098 1.36491 1.18666 0.90526 0.87274 0.88478 1.86320 1.36719 1.54716 1.41716 1.19584 0.89731 0.91135 0.83924 0.92555 1.21135 1.04514 1.07117 1.24249 0.93771 1.25526 0.97294 0.95197 0.97577 1.69967 1.20485 1.23342 1.41499 0.86707 0.78404 0.81133 0.82095 1.16619 1.20958 1.15845 1.20017 0.94978 0.99223 0.93465 1.21025 0.93327 0.98979 0.99636 1.21454 1.00671 0.99312 0.92413 1.21440 0.95241 1.00114 0.97754 1.21335 0.94555 0.99433 0.98529 1.21038 0.99792 1.03520 0.92497 1.21405 0.92021 1.02623 1.03290 0.77807 0.77861 0.91649 0.87028 0.83749 0.82705 0.83456 0.87380 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.07 18.54 19.00 0.35 -12.72 16 2 C 0.27 7.31 15.33 88.33 1.35 8.67 16 3 C 0.07 1.65 5.73 -21.38 -0.12 1.53 16 4 C -0.09 -1.42 9.75 22.55 0.22 -1.20 16 5 C 0.00 -0.06 9.53 22.21 0.21 0.15 16 6 C -0.08 -2.51 6.87 36.53 0.25 -2.26 16 7 N 0.04 1.31 4.45 -46.10 -0.21 1.10 16 8 O -0.15 -4.58 18.43 18.89 0.35 -4.23 16 9 O -0.20 -7.98 17.22 25.62 0.44 -7.54 16 10 C 0.20 7.25 6.57 22.47 0.15 7.40 16 11 O -0.28 -12.19 6.97 -71.23 -0.50 -12.68 16 12 C 0.21 9.41 1.57 29.10 0.05 9.45 16 13 H 0.06 2.42 3.46 -2.38 -0.01 2.41 16 14 C -0.53 -28.19 8.28 25.60 0.21 -27.98 16 15 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 16 C 0.05 2.48 5.37 84.65 0.45 2.93 16 17 N -0.92 -52.93 13.96 21.45 0.30 -52.63 16 18 Si 0.89 38.89 23.46 68.60 1.61 40.50 16 19 H -0.24 -9.99 6.74 99.48 0.67 -9.32 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.23 -9.08 6.05 99.48 0.60 -8.48 16 22 C -0.08 -3.21 4.92 -19.87 -0.10 -3.31 16 23 C -0.11 -4.41 9.35 22.27 0.21 -4.20 16 24 C -0.12 -3.80 10.05 22.27 0.22 -3.57 16 25 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 26 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 27 C -0.15 -5.64 8.63 22.27 0.19 -5.45 16 28 C -0.17 -5.72 8.41 22.64 0.19 -5.53 16 29 H 0.20 1.25 8.06 -2.91 -0.02 1.22 16 30 H 0.20 2.19 7.60 -2.91 -0.02 2.17 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.11 4.70 7.67 -2.91 -0.02 4.68 16 33 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.11 3.96 5.02 -2.91 -0.01 3.94 16 37 H 0.14 5.42 4.78 -2.91 -0.01 5.41 16 Total: -1.00 -68.55 330.51 7.30 -61.25 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.01 Total: 17.05 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 3.94 Total: -30.11 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: 0.45 Total: -64.25 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.29 Total: -24.45 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.61 Total: 40.50 kcal Total: -68.55 7.30 -61.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229188727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.418 kcal (2) G-P(sol) polarization free energy of solvation -68.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds