Wall clock time and date at job start Tue Mar 31 2020 14:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36003 * 116.99678 * 2 1 4 4 C 1.38335 * 120.01581 * 359.97438 * 3 2 1 5 5 C 1.39322 * 119.88074 * 180.02562 * 4 3 2 6 6 C 1.48437 * 120.04223 * 179.97438 * 5 4 3 7 7 N 1.34053 * 126.67966 * 359.68450 * 6 5 4 8 8 N 1.28990 * 107.27193 * 179.86841 * 7 6 5 9 9 N 1.28729 * 108.94392 * 0.40392 * 8 7 6 10 10 H 0.96994 * 125.34356 * 179.78835 * 9 8 7 11 11 N 1.28875 * 109.31995 * 359.73767 * 9 8 7 12 12 C 1.39328 * 119.91634 * 359.97438 * 5 4 3 13 13 C 1.38012 * 120.02378 * 359.74925 * 12 5 4 14 14 C 1.38660 * 120.11771 * 0.50651 * 13 12 5 15 15 O 1.35963 * 119.95565 * 179.76531 * 14 13 12 16 16 C 1.42906 * 116.99891 * 5.66001 * 15 14 13 17 17 H 1.08996 * 109.46807 * 21.68946 * 16 15 14 18 18 C 1.50695 * 109.47093 * 141.69381 * 16 15 14 19 19 H 1.08000 * 120.00294 * 359.97438 * 18 16 15 20 20 C 1.37879 * 119.99709 * 180.02562 * 18 16 15 21 21 N 1.31518 * 120.00219 * 179.97438 * 20 18 16 22 22 Si 1.86804 * 119.99949 * 359.97438 * 20 18 16 23 23 H 1.48497 * 109.47103 * 270.00269 * 22 20 18 24 24 H 1.48502 * 109.46893 * 30.00657 * 22 20 18 25 25 H 1.48505 * 109.46687 * 150.00413 * 22 20 18 26 26 C 1.52999 * 109.46726 * 261.69450 * 16 15 14 27 27 Cl 1.80295 * 109.47462 * 64.99764 * 26 16 15 28 28 H 1.09001 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46958 * 299.99583 * 1 2 3 30 30 H 1.09001 * 109.47338 * 60.00057 * 1 2 3 31 31 H 1.08003 * 120.05905 * 0.03800 * 4 3 2 32 32 H 1.07993 * 119.99145 * 180.02562 * 12 5 4 33 33 H 1.08000 * 119.94000 * 180.27713 * 13 12 5 34 34 H 0.96993 * 120.00024 * 179.97438 * 21 20 18 35 35 H 1.08996 * 109.47132 * 185.00000 * 26 16 15 36 36 H 1.09002 * 109.46806 * 304.99469 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3722 -0.0005 5 6 1.9285 3.6121 -0.0011 6 6 1.1239 4.8594 -0.0022 7 7 -0.2136 4.9495 -0.0088 8 7 -0.5130 6.2042 -0.0045 9 7 0.5744 6.8933 -0.0043 10 1 0.6248 7.8619 -0.0044 11 7 1.5855 6.0942 -0.0028 12 6 3.3202 3.6798 -0.0005 13 6 4.0679 2.5198 0.0058 14 6 3.4369 1.2851 0.0010 15 8 4.1768 0.1445 0.0024 16 6 5.5924 0.2896 0.1344 17 1 5.8178 1.2540 0.5896 18 6 6.1315 -0.8155 1.0056 19 1 5.4603 -1.5545 1.4177 20 6 7.4815 -0.8825 1.2776 21 7 7.9521 -1.8466 2.0383 22 14 8.6423 0.3962 0.5655 23 1 9.1381 -0.0665 -0.7556 24 1 7.9198 1.6830 0.4001 25 1 9.7917 0.5884 1.4860 26 6 6.2439 0.2133 -1.2478 27 17 5.7109 1.6198 -2.2420 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2145 2.3170 -0.0003 32 1 3.8139 4.6402 -0.0005 33 1 5.1466 2.5739 0.0107 34 1 8.9019 -1.8940 2.2293 35 1 7.3283 0.2348 -1.1400 36 1 5.9459 -0.7128 -1.7393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229337608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:56 Heat of formation + Delta-G solvation = 79.620886 kcal Electronic energy + Delta-G solvation = -24801.313079 eV Core-core repulsion = 20930.155171 eV Total energy + Delta-G solvation = -3871.157908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.48212 -40.22576 -38.21699 -36.90785 -35.31081 -34.35629 -33.55021 -33.05282 -30.82523 -30.17524 -29.21905 -27.10716 -25.27654 -24.73643 -24.16951 -22.79597 -21.47303 -20.60428 -19.30513 -18.30550 -17.18122 -17.12166 -16.81158 -16.06818 -15.64824 -15.27737 -15.13539 -14.58640 -14.47993 -14.08403 -13.61647 -13.34399 -13.19791 -12.83736 -12.63739 -12.53031 -12.24231 -11.99574 -11.63224 -11.41773 -11.32770 -11.27568 -11.12652 -11.01368 -10.89466 -10.77097 -10.47411 -10.09696 -9.86684 -9.61531 -9.34892 -8.92139 -8.37158 -7.34767 -6.44679 -4.49517 0.82793 1.21401 1.60606 2.16646 2.47995 2.84920 2.97377 3.08811 3.14630 3.51500 3.70605 3.87936 4.01737 4.02238 4.20491 4.82404 5.07208 5.18178 5.23948 5.30791 5.34003 5.41584 5.50216 5.57014 5.64203 5.68194 5.79182 5.89743 5.97316 6.20269 6.30897 6.44830 6.57803 6.62419 6.86579 7.12399 7.46161 7.90670 8.10014 8.29737 8.69346 9.08808 10.66702 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.003947 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.015732 B = 7092.491645 C = 7875.930622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.299 6.299 3 C 0.084 3.916 4 C -0.132 4.132 5 C -0.047 4.047 6 C 0.240 3.760 7 N -0.275 5.275 8 N -0.056 5.056 9 N -0.233 5.233 10 H 0.473 0.527 11 N -0.300 5.300 12 C -0.067 4.067 13 C -0.175 4.175 14 C 0.156 3.844 15 O -0.278 6.278 16 C 0.181 3.819 17 H 0.051 0.949 18 C -0.525 4.525 19 H 0.096 0.904 20 C 0.083 3.917 21 N -0.874 5.874 22 Si 0.860 3.140 23 H -0.268 1.268 24 H -0.256 1.256 25 H -0.280 1.280 26 C -0.053 4.053 27 Cl -0.220 7.220 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.273 0.727 35 H 0.089 0.911 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 13.342 -4.825 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.212 6.212 3 C 0.039 3.961 4 C -0.153 4.153 5 C -0.051 4.051 6 C -0.039 4.039 7 N -0.149 5.149 8 N -0.051 5.051 9 N -0.078 5.078 10 H 0.327 0.673 11 N -0.152 5.152 12 C -0.088 4.088 13 C -0.193 4.193 14 C 0.107 3.893 15 O -0.189 6.189 16 C 0.125 3.875 17 H 0.068 0.932 18 C -0.563 4.563 19 H 0.114 0.886 20 C -0.123 4.123 21 N -0.509 5.509 22 Si 0.687 3.313 23 H -0.194 1.194 24 H -0.181 1.181 25 H -0.206 1.206 26 C -0.116 4.116 27 Cl -0.194 7.194 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.783 13.278 -4.814 18.393 hybrid contribution 1.176 1.337 -0.462 1.840 sum -10.607 14.615 -5.276 18.813 Atomic orbital electron populations 1.23040 0.79159 1.03712 1.01042 1.86254 1.20436 1.25326 1.89210 1.18005 0.89169 0.84917 1.04027 1.20833 1.00098 0.89944 1.04465 1.16685 0.91270 0.86506 1.10682 1.23683 0.88521 0.91793 0.99930 1.76054 1.12613 1.07760 1.18426 1.78852 1.12686 0.98580 1.15000 1.47689 1.01054 1.12493 1.46571 0.67327 1.74971 1.15820 1.01462 1.22923 1.20771 0.91438 0.98564 0.98029 1.21264 1.01533 0.90553 1.05990 1.18608 0.88469 0.87274 0.94918 1.86277 1.20718 1.26779 1.85157 1.20941 0.75374 1.00533 0.90693 0.93207 1.20803 0.94004 1.12426 1.29053 0.88597 1.24829 0.97454 0.95387 0.94601 1.69808 1.14775 1.30922 1.35365 0.87244 0.81813 0.82964 0.79230 1.19425 1.18064 1.20621 1.26253 1.01550 0.89413 0.94357 1.98669 1.92556 1.52229 1.75964 0.88404 0.92843 0.92925 0.84063 0.85109 0.83350 0.91618 0.89340 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.12 10.28 -34.41 -0.35 -5.47 16 3 C 0.08 1.47 6.69 -39.17 -0.26 1.21 16 4 C -0.13 -2.01 8.69 -39.14 -0.34 -2.35 16 5 C -0.05 -0.72 5.88 -104.89 -0.62 -1.33 16 6 C 0.24 3.38 7.93 -156.30 -1.24 2.14 16 7 N -0.28 -3.82 12.23 32.15 0.39 -3.43 16 8 N -0.06 -0.65 13.47 60.35 0.81 0.17 16 9 N -0.23 -2.10 7.90 60.35 0.48 -1.62 16 10 H 0.47 1.84 8.96 -340.37 -3.05 -1.21 16 11 N -0.30 -3.65 12.07 32.17 0.39 -3.26 16 12 C -0.07 -1.03 9.69 -39.26 -0.38 -1.42 16 13 C -0.17 -3.06 7.18 -39.51 -0.28 -3.35 16 14 C 0.16 3.03 6.23 -39.05 -0.24 2.79 16 15 O -0.28 -6.17 9.46 -34.28 -0.32 -6.50 16 16 C 0.18 4.06 1.74 -27.89 -0.05 4.01 16 17 H 0.05 1.11 4.54 -51.93 -0.24 0.87 16 18 C -0.53 -13.85 9.47 -34.44 -0.33 -14.18 16 19 H 0.10 2.81 8.06 -52.49 -0.42 2.39 16 20 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 21 N -0.87 -24.53 13.96 55.43 0.77 -23.76 16 22 Si 0.86 19.07 24.41 -169.99 -4.15 14.92 16 23 H -0.27 -5.70 6.83 56.52 0.39 -5.32 16 24 H -0.26 -5.35 6.53 56.52 0.37 -4.98 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 C -0.05 -1.09 5.83 37.16 0.22 -0.87 16 27 Cl -0.22 -4.03 25.66 -51.86 -1.33 -5.36 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 30 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.14 1.86 6.11 -52.48 -0.32 1.54 16 32 H 0.13 1.77 7.87 -52.49 -0.41 1.36 16 33 H 0.15 2.67 4.80 -52.49 -0.25 2.41 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.09 1.83 3.22 -51.93 -0.17 1.66 16 36 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -30.54 317.97 -6.84 -37.37 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.69 Total: 2.13 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.63 Total: -9.97 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 2.84 Total: -31.90 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.68 Total: -11.97 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.15 Total: 14.92 kcal Atomic # 17 Polarization: -4.03 SS G_CDS: -1.33 Total: -5.36 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.54 -6.84 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229337608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.994 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds