Wall clock time and date at job start Tue Mar 31 2020 14:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36003 * 116.99678 * 2 1 4 4 C 1.38335 * 120.01581 * 359.97438 * 3 2 1 5 5 C 1.39322 * 119.88074 * 180.02562 * 4 3 2 6 6 C 1.48437 * 120.04223 * 179.97438 * 5 4 3 7 7 N 1.34053 * 126.67966 * 359.68450 * 6 5 4 8 8 N 1.28990 * 107.27193 * 179.86841 * 7 6 5 9 9 N 1.28729 * 108.94392 * 0.40392 * 8 7 6 10 10 H 0.96994 * 125.34356 * 179.78835 * 9 8 7 11 11 N 1.28875 * 109.31995 * 359.73767 * 9 8 7 12 12 C 1.39328 * 119.91634 * 359.97438 * 5 4 3 13 13 C 1.38012 * 120.02378 * 359.74925 * 12 5 4 14 14 C 1.38660 * 120.11771 * 0.50651 * 13 12 5 15 15 O 1.35963 * 119.95565 * 179.76531 * 14 13 12 16 16 C 1.42906 * 116.99891 * 5.66001 * 15 14 13 17 17 H 1.08996 * 109.46807 * 21.68946 * 16 15 14 18 18 C 1.50695 * 109.47093 * 141.69381 * 16 15 14 19 19 H 1.08000 * 120.00294 * 359.97438 * 18 16 15 20 20 C 1.37879 * 119.99709 * 180.02562 * 18 16 15 21 21 N 1.31518 * 120.00219 * 179.97438 * 20 18 16 22 22 Si 1.86804 * 119.99949 * 359.97438 * 20 18 16 23 23 H 1.48497 * 109.47103 * 270.00269 * 22 20 18 24 24 H 1.48502 * 109.46893 * 30.00657 * 22 20 18 25 25 H 1.48505 * 109.46687 * 150.00413 * 22 20 18 26 26 C 1.52999 * 109.46726 * 261.69450 * 16 15 14 27 27 Cl 1.80295 * 109.47462 * 64.99764 * 26 16 15 28 28 H 1.09001 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46958 * 299.99583 * 1 2 3 30 30 H 1.09001 * 109.47338 * 60.00057 * 1 2 3 31 31 H 1.08003 * 120.05905 * 0.03800 * 4 3 2 32 32 H 1.07993 * 119.99145 * 180.02562 * 12 5 4 33 33 H 1.08000 * 119.94000 * 180.27713 * 13 12 5 34 34 H 0.96993 * 120.00024 * 179.97438 * 21 20 18 35 35 H 1.08996 * 109.47132 * 185.00000 * 26 16 15 36 36 H 1.09002 * 109.46806 * 304.99469 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3722 -0.0005 5 6 1.9285 3.6121 -0.0011 6 6 1.1239 4.8594 -0.0022 7 7 -0.2136 4.9495 -0.0088 8 7 -0.5130 6.2042 -0.0045 9 7 0.5744 6.8933 -0.0043 10 1 0.6248 7.8619 -0.0044 11 7 1.5855 6.0942 -0.0028 12 6 3.3202 3.6798 -0.0005 13 6 4.0679 2.5198 0.0058 14 6 3.4369 1.2851 0.0010 15 8 4.1768 0.1445 0.0024 16 6 5.5924 0.2896 0.1344 17 1 5.8178 1.2540 0.5896 18 6 6.1315 -0.8155 1.0056 19 1 5.4603 -1.5545 1.4177 20 6 7.4815 -0.8825 1.2776 21 7 7.9521 -1.8466 2.0383 22 14 8.6423 0.3962 0.5655 23 1 9.1381 -0.0665 -0.7556 24 1 7.9198 1.6830 0.4001 25 1 9.7917 0.5884 1.4860 26 6 6.2439 0.2133 -1.2478 27 17 5.7109 1.6198 -2.2420 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2145 2.3170 -0.0003 32 1 3.8139 4.6402 -0.0005 33 1 5.1466 2.5739 0.0107 34 1 8.9019 -1.8940 2.2293 35 1 7.3283 0.2348 -1.1400 36 1 5.9459 -0.7128 -1.7393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229337608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:56 Heat of formation + Delta-G solvation = 58.257659 kcal Electronic energy + Delta-G solvation = -24802.239458 eV Core-core repulsion = 20930.155171 eV Total energy + Delta-G solvation = -3872.084287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.43028 -41.55779 -39.64057 -38.17764 -36.85448 -35.43499 -35.21853 -34.23338 -32.54259 -31.42221 -30.50714 -28.13804 -27.15202 -25.71174 -25.37142 -24.17934 -22.68582 -22.05670 -20.33956 -19.65361 -18.80795 -18.31934 -18.11184 -17.51864 -17.00605 -16.68661 -16.28076 -16.05916 -15.87140 -15.20682 -15.06391 -14.94965 -14.62061 -14.50182 -13.85207 -13.72590 -13.60508 -13.17682 -13.09520 -12.79583 -12.67415 -12.44011 -12.34753 -12.21842 -12.15993 -12.09591 -11.93471 -11.64626 -11.50565 -11.11624 -11.09473 -10.78688 -9.63487 -8.69965 -8.46742 -6.58605 -0.27332 0.20300 0.34743 1.21181 1.25377 1.31902 1.32755 1.41750 1.44686 2.15903 2.35373 2.40407 2.68916 2.74607 2.85781 3.18131 3.86258 3.92555 3.92976 4.05067 4.11107 4.16280 4.31141 4.35680 4.45846 4.47348 4.52319 4.70614 4.78771 4.85472 5.06251 5.13201 5.29882 5.38384 5.59227 5.64918 5.91269 6.31247 6.50294 6.76255 7.05768 7.14125 8.69137 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.003947 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.015732 B = 7092.491645 C = 7875.930622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.079 3.921 4 C -0.125 4.125 5 C -0.037 4.037 6 C 0.222 3.778 7 N -0.293 5.293 8 N -0.055 5.055 9 N -0.200 5.200 10 H 0.494 0.506 11 N -0.296 5.296 12 C -0.066 4.066 13 C -0.175 4.175 14 C 0.116 3.884 15 O -0.305 6.305 16 C 0.188 3.812 17 H 0.056 0.944 18 C -0.540 4.540 19 H 0.044 0.956 20 C 0.034 3.966 21 N -0.924 5.924 22 Si 0.919 3.081 23 H -0.248 1.248 24 H -0.233 1.233 25 H -0.278 1.278 26 C -0.050 4.050 27 Cl -0.194 7.194 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.278 0.722 35 H 0.091 0.909 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.119 16.766 -6.150 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.033 3.967 4 C -0.146 4.146 5 C -0.041 4.041 6 C -0.057 4.057 7 N -0.166 5.166 8 N -0.050 5.050 9 N -0.051 5.051 10 H 0.353 0.647 11 N -0.148 5.148 12 C -0.086 4.086 13 C -0.193 4.193 14 C 0.069 3.931 15 O -0.218 6.218 16 C 0.132 3.868 17 H 0.074 0.926 18 C -0.578 4.578 19 H 0.063 0.937 20 C -0.167 4.167 21 N -0.561 5.561 22 Si 0.741 3.259 23 H -0.173 1.173 24 H -0.156 1.156 25 H -0.204 1.204 26 C -0.112 4.112 27 Cl -0.168 7.168 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.567 16.739 -6.153 21.817 hybrid contribution 1.141 0.417 -0.025 1.215 sum -11.426 17.156 -6.178 21.519 Atomic orbital electron populations 1.23369 0.76549 1.05489 1.02360 1.86214 1.23278 1.25687 1.89247 1.18168 0.88838 0.85790 1.03880 1.20997 1.00896 0.89212 1.03475 1.16829 0.91418 0.87129 1.08701 1.23473 0.88701 0.91911 1.01613 1.76044 1.12541 1.08835 1.19152 1.78815 1.13031 0.98103 1.15045 1.47757 0.99897 1.13431 1.44022 0.64650 1.74923 1.16508 1.01109 1.22283 1.20923 0.91575 0.98609 0.97486 1.21236 1.01363 0.90630 1.06088 1.18946 0.89188 0.87032 0.97960 1.86211 1.20364 1.28769 1.86430 1.20631 0.76180 0.98798 0.91186 0.92619 1.20911 0.93900 1.12651 1.30314 0.93721 1.25661 0.98990 0.97443 0.94595 1.69954 1.15499 1.33340 1.37271 0.86286 0.79377 0.80992 0.79215 1.17338 1.15619 1.20407 1.25832 1.01181 0.90470 0.93754 1.98665 1.92449 1.50710 1.74949 0.86596 0.91603 0.91356 0.82112 0.82997 0.83885 0.91286 0.89138 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -11.41 10.28 -79.58 -0.82 -12.23 16 3 C 0.08 2.75 6.69 22.54 0.15 2.90 16 4 C -0.13 -3.61 8.69 22.55 0.20 -3.41 16 5 C -0.04 -1.04 5.88 -20.04 -0.12 -1.16 16 6 C 0.22 5.65 7.93 137.37 1.09 6.74 16 7 N -0.29 -7.34 12.23 -52.19 -0.64 -7.97 16 8 N -0.05 -1.10 13.47 37.02 0.50 -0.60 16 9 N -0.20 -2.89 7.90 37.02 0.29 -2.60 16 10 H 0.49 1.89 8.96 -347.55 -3.12 -1.22 16 11 N -0.30 -6.18 12.07 -52.14 -0.63 -6.80 16 12 C -0.07 -1.88 9.69 22.48 0.22 -1.66 16 13 C -0.17 -5.97 7.18 22.32 0.16 -5.81 16 14 C 0.12 4.55 6.23 22.61 0.14 4.69 16 15 O -0.30 -14.05 9.46 -79.13 -0.75 -14.80 16 16 C 0.19 8.62 1.74 29.85 0.05 8.67 16 17 H 0.06 2.47 4.54 -2.39 -0.01 2.46 16 18 C -0.54 -29.93 9.47 25.60 0.24 -29.69 16 19 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 20 C 0.03 1.86 5.45 84.65 0.46 2.32 16 21 N -0.92 -53.98 13.96 21.45 0.30 -53.68 16 22 Si 0.92 38.81 24.41 68.60 1.67 40.49 16 23 H -0.25 -9.70 6.83 99.48 0.68 -9.03 16 24 H -0.23 -8.92 6.53 99.48 0.65 -8.27 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 C -0.05 -2.00 5.83 71.98 0.42 -1.58 16 27 Cl -0.19 -6.75 25.66 -2.72 -0.07 -6.82 16 28 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 30 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 31 H 0.16 3.91 6.11 -2.91 -0.02 3.89 16 32 H 0.15 3.66 7.87 -2.91 -0.02 3.63 16 33 H 0.14 4.97 4.80 -2.91 -0.01 4.95 16 34 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.09 3.59 3.22 -2.39 -0.01 3.58 16 36 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 Total: -1.00 -68.77 317.97 1.96 -66.80 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -2.02 Total: 14.74 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.13 Total: -16.52 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -0.18 Total: -71.66 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -1.57 Total: -27.03 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.67 Total: 40.49 kcal Atomic # 17 Polarization: -6.75 SS G_CDS: -0.07 Total: -6.82 kcal Total: -68.77 1.96 -66.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229337608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.062 kcal (2) G-P(sol) polarization free energy of solvation -68.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds