Wall clock time and date at job start Tue Mar 31 2020 14:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39581 * 120.12486 * 127.02553 * 3 2 1 5 5 C 1.38434 * 119.79140 * 179.97438 * 4 3 2 6 6 O 1.35911 * 119.98306 * 180.02562 * 5 4 3 7 7 C 1.42897 * 116.99936 * 185.27456 * 6 5 4 8 8 H 1.08997 * 109.47600 * 35.29034 * 7 6 5 9 9 C 1.50704 * 109.46679 * 275.29181 * 7 6 5 10 10 H 1.07994 * 120.00073 * 328.31526 * 9 7 6 11 11 C 1.37883 * 119.99951 * 148.31615 * 9 7 6 12 12 N 1.31511 * 119.99819 * 174.47689 * 11 9 7 13 13 Si 1.86797 * 119.99884 * 354.48147 * 11 9 7 14 14 H 1.48507 * 109.47375 * 91.64692 * 13 11 9 15 15 H 1.48494 * 109.47134 * 211.64618 * 13 11 9 16 16 H 1.48497 * 109.47182 * 331.64619 * 13 11 9 17 17 C 1.50696 * 109.47325 * 155.29529 * 7 6 5 18 18 C 1.38233 * 120.00095 * 37.11324 * 17 7 6 19 19 C 1.38240 * 120.00203 * 179.79173 * 18 17 7 20 20 C 1.38233 * 119.99815 * 0.44241 * 19 18 17 21 21 C 1.38242 * 119.99837 * 359.81262 * 20 19 18 22 22 C 1.38230 * 120.00071 * 359.97438 * 21 20 19 23 23 C 1.38861 * 120.03414 * 0.27652 * 5 4 3 24 24 C 1.38244 * 120.25113 * 359.44659 * 23 5 4 25 25 C 1.37995 * 120.21311 * 0.55132 * 24 23 5 26 26 N 1.48020 * 120.02012 * 179.70037 * 25 24 23 27 27 O 1.21799 * 120.00294 * 0.02562 * 26 25 24 28 28 O 1.21799 * 119.99667 * 180.02562 * 26 25 24 29 29 H 1.08004 * 120.10054 * 0.02562 * 4 3 2 30 30 H 0.96998 * 119.99663 * 180.02562 * 12 11 9 31 31 H 1.08003 * 119.99785 * 0.02562 * 18 17 7 32 32 H 1.08001 * 120.00029 * 180.27305 * 19 18 17 33 33 H 1.07997 * 120.00023 * 179.83449 * 20 19 18 34 34 H 1.07995 * 119.99570 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.00229 * 180.02562 * 22 21 20 36 36 H 1.08006 * 119.87036 * 179.70755 * 23 5 4 37 37 H 1.08007 * 119.89691 * 180.27511 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.7279 -0.9639 5 6 4.6525 0.7241 -0.9571 6 8 5.3383 1.4314 -1.8935 7 6 6.7603 1.2908 -1.8998 8 1 7.0256 0.2679 -1.6328 9 6 7.3636 2.2435 -0.9000 10 1 6.8849 3.1906 -0.6996 11 6 8.5268 1.9059 -0.2410 12 7 9.1121 2.7792 0.5490 13 14 9.2711 0.2081 -0.4705 14 1 10.2489 0.2431 -1.5877 15 1 9.9612 -0.2028 0.7785 16 1 8.1951 -0.7658 -0.7849 17 6 7.2900 1.6045 -3.2753 18 6 6.7134 2.6129 -4.0246 19 6 7.2021 2.9035 -5.2847 20 6 8.2614 2.1796 -5.7991 21 6 8.8346 1.1676 -5.0518 22 6 8.3488 0.8800 -3.7901 23 6 5.3409 -0.0061 0.0027 24 6 4.6490 -0.7224 0.9615 25 6 3.2691 -0.7258 0.9645 26 7 2.5326 -1.4996 1.9891 27 8 3.1446 -2.1333 2.8302 28 8 1.3146 -1.5027 1.9910 29 1 2.7316 1.2926 -1.7120 30 1 9.9306 2.5418 1.0123 31 1 5.8836 3.1763 -3.6241 32 1 6.7544 3.6943 -5.8684 33 1 8.6415 2.4048 -6.7846 34 1 9.6625 0.6023 -5.4535 35 1 8.7968 0.0897 -3.2061 36 1 6.4209 -0.0110 0.0026 37 1 5.1902 -1.2848 1.7081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229523902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:44 Heat of formation + Delta-G solvation = 50.384641 kcal Electronic energy + Delta-G solvation = -26040.642587 eV Core-core repulsion = 22138.356999 eV Total energy + Delta-G solvation = -3902.285589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.12584 -40.36534 -38.90918 -37.68712 -36.64460 -36.07484 -33.57655 -31.94955 -31.70105 -30.81620 -30.45719 -27.85872 -26.27655 -24.24648 -23.48572 -22.47912 -22.12075 -20.85408 -19.86747 -18.71030 -18.29942 -17.79676 -17.45960 -16.99466 -16.65085 -15.90600 -15.23237 -14.81228 -14.60914 -14.52683 -14.38696 -13.84210 -13.56369 -13.43513 -13.21073 -13.16863 -12.91560 -12.84056 -12.64208 -12.31338 -12.09103 -11.47913 -11.43229 -11.26432 -11.22630 -11.05922 -11.00968 -10.68985 -10.43787 -10.15238 -9.98811 -9.45250 -9.15497 -8.59133 -8.52319 -8.19536 -6.66144 -4.73147 -0.21683 0.61395 1.43709 1.46321 1.74887 1.80490 2.51710 2.76821 2.78457 2.85832 2.96694 3.15386 3.50934 3.73527 3.82615 4.20278 4.28607 4.62285 4.67428 4.78618 4.97999 5.23563 5.26940 5.30218 5.40572 5.47197 5.53213 5.70371 5.75091 5.91556 5.97952 6.03987 6.21770 6.33597 6.41355 6.45342 6.80368 6.83249 6.87360 7.02421 7.31806 7.39085 7.43259 7.72442 7.88859 8.43950 8.87754 10.44873 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.004105 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.426966 B = 6818.678258 C = 8112.700406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C 0.245 3.755 3 C 0.078 3.922 4 C -0.120 4.120 5 C 0.223 3.777 6 O -0.291 6.291 7 C 0.201 3.799 8 H 0.057 0.943 9 C -0.542 4.542 10 H 0.093 0.907 11 C 0.091 3.909 12 N -0.861 5.861 13 Si 0.847 3.153 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.256 1.256 17 C -0.043 4.043 18 C -0.099 4.099 19 C -0.122 4.122 20 C -0.139 4.139 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.176 4.176 24 C -0.010 4.010 25 C -0.070 4.070 26 N 0.039 4.961 27 O -0.159 6.159 28 O -0.177 6.177 29 H 0.161 0.839 30 H 0.275 0.725 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.167 0.833 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -4.653 -6.828 8.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.047 5.047 2 C -0.071 4.071 3 C 0.073 3.927 4 C -0.142 4.142 5 C 0.172 3.828 6 O -0.202 6.202 7 C 0.147 3.853 8 H 0.074 0.926 9 C -0.579 4.579 10 H 0.111 0.889 11 C -0.117 4.117 12 N -0.495 5.495 13 Si 0.673 3.327 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.182 1.182 17 C -0.044 4.044 18 C -0.117 4.117 19 C -0.140 4.140 20 C -0.157 4.157 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.196 4.196 24 C -0.029 4.029 25 C -0.157 4.157 26 N 0.554 4.446 27 O -0.375 6.375 28 O -0.386 6.386 29 H 0.179 0.821 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.184 0.816 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.409 -4.083 -7.327 9.054 hybrid contribution 1.263 -0.926 0.455 1.631 sum -2.146 -5.009 -6.872 8.770 Atomic orbital electron populations 1.81159 1.11350 1.05905 1.06244 1.24936 0.91967 0.95287 0.94942 1.15136 0.85261 0.97453 0.94815 1.20391 0.91538 1.02176 1.00071 1.19034 0.90766 0.85946 0.87036 1.86092 1.24318 1.61022 1.48741 1.19896 0.74237 0.98790 0.92361 0.92580 1.21159 1.10147 1.05528 1.21048 0.88915 1.24910 0.95903 0.96926 0.93960 1.69831 1.18276 1.34174 1.27243 0.87387 0.80969 0.84794 0.79565 1.18459 1.19882 1.18164 1.19991 0.95638 0.95186 0.93589 1.20912 0.99958 0.97031 0.93789 1.21089 0.97162 0.99595 0.96158 1.20970 0.97710 0.97276 0.99757 1.20943 0.99813 0.98305 0.94628 1.20849 0.97646 1.00339 0.95702 1.21889 1.03173 0.99160 0.95333 1.20775 0.89927 0.94914 0.97305 1.20800 0.92419 1.06578 0.95865 1.43453 1.01126 0.99253 1.00719 1.94518 1.69802 1.41302 1.31925 1.94560 0.95550 1.68885 1.79653 0.82145 0.91438 0.85837 0.86622 0.86810 0.86650 0.87099 0.81623 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.95 18.38 41.84 0.77 -5.18 16 2 C 0.24 3.60 12.72 -22.47 -0.29 3.31 16 3 C 0.08 1.06 5.73 -106.95 -0.61 0.45 16 4 C -0.12 -1.53 9.69 -39.01 -0.38 -1.90 16 5 C 0.22 3.36 6.58 -39.28 -0.26 3.10 16 6 O -0.29 -4.98 9.01 -19.46 -0.18 -5.15 16 7 C 0.20 3.81 1.57 -29.03 -0.05 3.76 16 8 H 0.06 1.03 3.35 -51.93 -0.17 0.86 16 9 C -0.54 -12.36 8.33 -34.44 -0.29 -12.64 16 10 H 0.09 2.40 8.06 -52.49 -0.42 1.97 16 11 C 0.09 2.14 5.45 -17.82 -0.10 2.04 16 12 N -0.86 -22.27 13.96 55.43 0.77 -21.49 16 13 Si 0.85 16.76 23.93 -169.99 -4.07 12.69 16 14 H -0.26 -5.09 6.82 56.52 0.39 -4.70 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.26 -4.46 5.47 56.52 0.31 -4.15 16 17 C -0.04 -0.79 4.97 -104.63 -0.52 -1.31 16 18 C -0.10 -1.66 9.35 -39.58 -0.37 -2.03 16 19 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 20 C -0.14 -1.93 10.05 -39.58 -0.40 -2.33 16 21 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 22 C -0.13 -2.19 9.08 -39.58 -0.36 -2.55 16 23 C -0.18 -2.64 8.71 -39.35 -0.34 -2.99 16 24 C -0.01 -0.13 9.54 -39.67 -0.38 -0.51 16 25 C -0.07 -1.01 6.88 -79.52 -0.55 -1.56 16 26 N 0.04 0.62 4.45 34.17 0.15 0.78 16 27 O -0.16 -2.56 18.44 -29.46 -0.54 -3.10 16 28 O -0.18 -3.06 16.35 -29.46 -0.48 -3.54 16 29 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.28 6.65 8.31 -40.82 -0.34 6.32 16 31 H 0.12 2.00 7.69 -52.48 -0.40 1.60 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.86 5.61 -52.49 -0.29 1.57 16 36 H 0.17 2.72 3.76 -52.48 -0.20 2.53 16 37 H 0.16 1.87 7.60 -52.48 -0.40 1.47 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -26.03 329.27 -7.11 -33.15 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.83 Total: 6.37 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -5.68 Total: -19.48 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 1.69 Total: -25.90 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.20 Total: -11.79 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -4.07 Total: 12.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.03 -7.11 -33.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229523902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.532 kcal (2) G-P(sol) polarization free energy of solvation -26.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds