Wall clock time and date at job start Tue Mar 31 2020 14:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39581 * 120.12486 * 127.02553 * 3 2 1 5 5 C 1.38434 * 119.79140 * 179.97438 * 4 3 2 6 6 O 1.35911 * 119.98306 * 180.02562 * 5 4 3 7 7 C 1.42897 * 116.99936 * 185.27456 * 6 5 4 8 8 H 1.08997 * 109.47600 * 35.29034 * 7 6 5 9 9 C 1.50704 * 109.46679 * 275.29181 * 7 6 5 10 10 H 1.07994 * 120.00073 * 328.31526 * 9 7 6 11 11 C 1.37883 * 119.99951 * 148.31615 * 9 7 6 12 12 N 1.31511 * 119.99819 * 174.47689 * 11 9 7 13 13 Si 1.86797 * 119.99884 * 354.48147 * 11 9 7 14 14 H 1.48507 * 109.47375 * 91.64692 * 13 11 9 15 15 H 1.48494 * 109.47134 * 211.64618 * 13 11 9 16 16 H 1.48497 * 109.47182 * 331.64619 * 13 11 9 17 17 C 1.50696 * 109.47325 * 155.29529 * 7 6 5 18 18 C 1.38233 * 120.00095 * 37.11324 * 17 7 6 19 19 C 1.38240 * 120.00203 * 179.79173 * 18 17 7 20 20 C 1.38233 * 119.99815 * 0.44241 * 19 18 17 21 21 C 1.38242 * 119.99837 * 359.81262 * 20 19 18 22 22 C 1.38230 * 120.00071 * 359.97438 * 21 20 19 23 23 C 1.38861 * 120.03414 * 0.27652 * 5 4 3 24 24 C 1.38244 * 120.25113 * 359.44659 * 23 5 4 25 25 C 1.37995 * 120.21311 * 0.55132 * 24 23 5 26 26 N 1.48020 * 120.02012 * 179.70037 * 25 24 23 27 27 O 1.21799 * 120.00294 * 0.02562 * 26 25 24 28 28 O 1.21799 * 119.99667 * 180.02562 * 26 25 24 29 29 H 1.08004 * 120.10054 * 0.02562 * 4 3 2 30 30 H 0.96998 * 119.99663 * 180.02562 * 12 11 9 31 31 H 1.08003 * 119.99785 * 0.02562 * 18 17 7 32 32 H 1.08001 * 120.00029 * 180.27305 * 19 18 17 33 33 H 1.07997 * 120.00023 * 179.83449 * 20 19 18 34 34 H 1.07995 * 119.99570 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.00229 * 180.02562 * 22 21 20 36 36 H 1.08006 * 119.87036 * 179.70755 * 23 5 4 37 37 H 1.08007 * 119.89691 * 180.27511 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.7279 -0.9639 5 6 4.6525 0.7241 -0.9571 6 8 5.3383 1.4314 -1.8935 7 6 6.7603 1.2908 -1.8998 8 1 7.0256 0.2679 -1.6328 9 6 7.3636 2.2435 -0.9000 10 1 6.8849 3.1906 -0.6996 11 6 8.5268 1.9059 -0.2410 12 7 9.1121 2.7792 0.5490 13 14 9.2711 0.2081 -0.4705 14 1 10.2489 0.2431 -1.5877 15 1 9.9612 -0.2028 0.7785 16 1 8.1951 -0.7658 -0.7849 17 6 7.2900 1.6045 -3.2753 18 6 6.7134 2.6129 -4.0246 19 6 7.2021 2.9035 -5.2847 20 6 8.2614 2.1796 -5.7991 21 6 8.8346 1.1676 -5.0518 22 6 8.3488 0.8800 -3.7901 23 6 5.3409 -0.0061 0.0027 24 6 4.6490 -0.7224 0.9615 25 6 3.2691 -0.7258 0.9645 26 7 2.5326 -1.4996 1.9891 27 8 3.1446 -2.1333 2.8302 28 8 1.3146 -1.5027 1.9910 29 1 2.7316 1.2926 -1.7120 30 1 9.9306 2.5418 1.0123 31 1 5.8836 3.1763 -3.6241 32 1 6.7544 3.6943 -5.8684 33 1 8.6415 2.4048 -6.7846 34 1 9.6625 0.6023 -5.4535 35 1 8.7968 0.0897 -3.2061 36 1 6.4209 -0.0110 0.0026 37 1 5.1902 -1.2848 1.7081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229523902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:43 Heat of formation + Delta-G solvation = 38.324867 kcal Electronic energy + Delta-G solvation = -26041.165538 eV Core-core repulsion = 22138.356999 eV Total energy + Delta-G solvation = -3902.808540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.37791 -41.62863 -40.11985 -38.93034 -37.90613 -37.32364 -35.20074 -33.34048 -32.88763 -32.05628 -31.64290 -29.32575 -27.57102 -25.51619 -24.89229 -23.70038 -23.30922 -22.11355 -21.09191 -19.97666 -19.63037 -19.41270 -18.71306 -18.25681 -17.92266 -17.07926 -16.71618 -16.03683 -15.84837 -15.69832 -15.63523 -15.10260 -14.93928 -14.69006 -14.65814 -14.38722 -14.18241 -14.07659 -13.93009 -13.58561 -13.33084 -12.92918 -12.73622 -12.64185 -12.48293 -12.36386 -12.28481 -11.95242 -11.91027 -11.61985 -11.46398 -10.91685 -10.57647 -9.82860 -9.71766 -9.47959 -8.45358 -6.56467 -1.45746 -0.53188 0.20455 0.23918 0.54077 0.60836 1.22100 1.28272 1.32496 1.37562 1.59401 1.90466 2.17508 2.33761 2.51755 2.84320 3.08229 3.17064 3.46362 3.60663 3.82345 3.98966 4.08679 4.19165 4.27807 4.32045 4.39170 4.41455 4.58102 4.75714 4.81160 4.87211 4.98411 5.07579 5.17868 5.23311 5.27227 5.65030 5.69992 5.77320 5.91666 6.13658 6.20134 6.27493 6.41780 6.57681 7.09755 8.69758 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.004105 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.426966 B = 6818.678258 C = 8112.700406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.258 3.742 3 C 0.081 3.919 4 C -0.095 4.095 5 C 0.207 3.793 6 O -0.296 6.296 7 C 0.211 3.789 8 H 0.065 0.935 9 C -0.537 4.537 10 H 0.046 0.954 11 C 0.044 3.956 12 N -0.919 5.919 13 Si 0.893 3.107 14 H -0.253 1.253 15 H -0.278 1.278 16 H -0.220 1.220 17 C -0.073 4.073 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.146 4.146 23 C -0.183 4.183 24 C 0.004 3.996 25 C -0.071 4.071 26 N 0.039 4.961 27 O -0.147 6.147 28 O -0.208 6.208 29 H 0.188 0.812 30 H 0.274 0.726 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.155 0.845 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -6.021 -8.981 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.058 4.058 3 C 0.076 3.924 4 C -0.117 4.117 5 C 0.157 3.843 6 O -0.207 6.207 7 C 0.157 3.843 8 H 0.082 0.918 9 C -0.574 4.574 10 H 0.064 0.936 11 C -0.159 4.159 12 N -0.556 5.556 13 Si 0.716 3.284 14 H -0.178 1.178 15 H -0.204 1.204 16 H -0.143 1.143 17 C -0.074 4.074 18 C -0.135 4.135 19 C -0.140 4.140 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.164 4.164 23 C -0.203 4.203 24 C -0.015 4.015 25 C -0.157 4.157 26 N 0.552 4.448 27 O -0.369 6.369 28 O -0.411 6.411 29 H 0.205 0.795 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.130 0.870 36 H 0.172 0.828 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.161 -5.453 -9.514 11.412 hybrid contribution 1.123 -0.431 1.062 1.605 sum -2.038 -5.884 -8.452 10.498 Atomic orbital electron populations 1.81172 1.12064 1.06720 1.07023 1.24965 0.91986 0.94577 0.94238 1.15105 0.84742 0.97620 0.94940 1.20527 0.90540 1.00914 0.99705 1.19266 0.91556 0.86380 0.87086 1.86056 1.23331 1.61911 1.49413 1.19641 0.74721 0.97839 0.92094 0.91771 1.21184 1.09861 1.04351 1.22018 0.93602 1.25620 0.96266 1.00508 0.93462 1.69983 1.19319 1.36690 1.29611 0.86619 0.81211 0.81175 0.79404 1.17793 1.20359 1.14316 1.20038 0.96881 0.96712 0.93733 1.21037 1.00388 0.97054 0.95039 1.21448 0.97173 1.00080 0.95307 1.21434 0.96617 0.95968 1.00981 1.21344 1.00290 0.98584 0.93722 1.21043 0.97649 1.00725 0.97006 1.21813 1.02691 0.99853 0.95963 1.20888 0.89499 0.94146 0.96957 1.20877 0.92652 1.06582 0.95622 1.43624 1.01046 0.99214 1.00867 1.94501 1.69611 1.40856 1.31885 1.94573 0.96066 1.70044 1.80403 0.79518 0.91659 0.86433 0.83828 0.83196 0.83765 0.87023 0.82804 0.80034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -12.31 18.38 19.00 0.35 -11.96 16 2 C 0.26 7.28 12.72 88.33 1.12 8.40 16 3 C 0.08 2.07 5.73 -21.37 -0.12 1.94 16 4 C -0.10 -2.25 9.69 22.64 0.22 -2.03 16 5 C 0.21 6.01 6.58 22.47 0.15 6.16 16 6 O -0.30 -10.04 9.01 -92.54 -0.83 -10.87 16 7 C 0.21 7.99 1.57 29.10 0.05 8.04 16 8 H 0.06 2.29 3.35 -2.39 -0.01 2.28 16 9 C -0.54 -25.32 8.33 25.60 0.21 -25.10 16 10 H 0.05 2.53 8.06 -2.91 -0.02 2.50 16 11 C 0.04 2.12 5.45 84.66 0.46 2.58 16 12 N -0.92 -49.65 13.96 21.45 0.30 -49.35 16 13 Si 0.89 34.03 23.93 68.60 1.64 35.67 16 14 H -0.25 -9.36 6.82 99.48 0.68 -8.68 16 15 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16 16 H -0.22 -6.95 5.47 99.48 0.54 -6.41 16 17 C -0.07 -2.62 4.97 -19.87 -0.10 -2.72 16 18 C -0.12 -3.84 9.35 22.27 0.21 -3.63 16 19 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 20 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 21 C -0.12 -3.23 10.05 22.27 0.22 -3.00 16 22 C -0.15 -4.76 9.08 22.27 0.20 -4.56 16 23 C -0.18 -5.28 8.71 22.42 0.20 -5.09 16 24 C 0.00 0.11 9.54 22.21 0.21 0.32 16 25 C -0.07 -1.92 6.88 36.65 0.25 -1.67 16 26 N 0.04 1.20 4.45 -45.80 -0.20 1.00 16 27 O -0.15 -4.48 18.44 18.89 0.35 -4.13 16 28 O -0.21 -7.06 16.35 18.89 0.31 -6.75 16 29 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.12 3.85 7.69 -2.91 -0.02 3.83 16 32 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.11 3.52 5.61 -2.91 -0.02 3.50 16 36 H 0.15 4.89 3.76 -2.91 -0.01 4.88 16 37 H 0.18 3.77 7.60 -2.91 -0.02 3.75 16 Total: -1.00 -58.93 329.27 6.60 -52.33 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.96 Total: 20.39 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 3.73 Total: -26.32 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.44 Total: -60.31 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.18 Total: -21.76 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 1.64 Total: 35.67 kcal Total: -58.93 6.60 -52.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229523902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.653 kcal (2) G-P(sol) polarization free energy of solvation -58.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds