Wall clock time and date at job start Tue Mar 31 2020 14:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39661 * 120.12593 * 222.57678 * 3 2 1 5 5 C 1.37952 * 119.96310 * 179.72593 * 4 3 2 6 6 C 1.38292 * 120.20962 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.25420 * 0.02562 * 6 5 4 8 8 O 1.35905 * 119.98521 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99912 * 354.59256 * 8 7 6 10 10 H 1.08998 * 109.47042 * 324.13571 * 9 8 7 11 11 C 1.50703 * 109.46891 * 84.13672 * 9 8 7 12 12 H 1.08004 * 119.99538 * 239.99922 * 11 9 8 13 13 C 1.37870 * 120.00081 * 60.00031 * 11 9 8 14 14 N 1.31520 * 120.00234 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 120.00034 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47281 * 89.99808 * 15 13 11 17 17 H 1.48501 * 109.46982 * 210.00294 * 15 13 11 18 18 H 1.48502 * 109.46724 * 329.99664 * 15 13 11 19 19 C 1.50700 * 109.46870 * 204.13613 * 9 8 7 20 20 C 1.38229 * 120.00007 * 324.72338 * 19 9 8 21 21 C 1.38241 * 119.99748 * 179.81261 * 20 19 9 22 22 C 1.38235 * 119.99877 * 0.39579 * 21 20 19 23 23 C 1.38234 * 120.00145 * 359.86329 * 22 21 20 24 24 C 1.38231 * 119.99837 * 359.94890 * 23 22 21 25 25 C 1.38487 * 120.03300 * 359.97438 * 7 6 5 26 26 N 1.48020 * 120.10409 * 179.97438 * 25 7 6 27 27 O 1.21805 * 120.00060 * 269.98169 * 26 25 7 28 28 O 1.21798 * 120.00120 * 89.97774 * 26 25 7 29 29 H 1.08008 * 120.02206 * 359.70677 * 4 3 2 30 30 H 1.08000 * 119.89766 * 180.02562 * 5 4 3 31 31 H 1.08005 * 119.87276 * 180.02562 * 6 5 4 32 32 H 0.97003 * 120.00043 * 180.02562 * 14 13 11 33 33 H 1.07994 * 120.00517 * 0.02562 * 20 19 9 34 34 H 1.08004 * 120.00316 * 180.23338 * 21 20 19 35 35 H 1.08001 * 119.99912 * 179.83076 * 22 21 20 36 36 H 1.07998 * 120.00142 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00029 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2685 0.8905 0.8173 5 6 4.6480 0.8843 0.8188 6 6 5.3408 -0.0011 0.0136 7 6 4.6535 -0.8893 -0.8022 8 8 5.3398 -1.7568 -1.5918 9 6 6.7620 -1.6202 -1.6222 10 1 7.0272 -0.5650 -1.5577 11 6 7.3628 -2.3614 -0.4556 12 1 7.9512 -1.8291 0.2771 13 6 7.1612 -3.7189 -0.3237 14 7 6.4443 -4.3670 -1.2157 15 14 7.9053 -4.6375 1.1227 16 1 6.9461 -4.6362 2.2563 17 1 8.1973 -6.0374 0.7227 18 1 9.1643 -3.9688 1.5389 19 6 7.2943 -2.1941 -2.9099 20 6 6.6947 -3.3061 -3.4710 21 6 7.1806 -3.8302 -4.6544 22 6 8.2712 -3.2472 -5.2721 23 6 8.8742 -2.1385 -4.7082 24 6 8.3858 -1.6121 -3.5270 25 6 3.2686 -0.8920 -0.8119 26 7 2.5341 -1.8381 -1.6816 27 8 2.2356 -1.5151 -2.8174 28 8 2.2282 -2.9397 -1.2614 29 1 2.7306 1.5833 1.4476 30 1 5.1887 1.5726 1.4516 31 1 6.4208 -0.0015 0.0194 32 1 6.3022 -5.3221 -1.1226 33 1 5.8445 -3.7633 -2.9869 34 1 6.7099 -4.6967 -5.0948 35 1 8.6526 -3.6583 -6.1952 36 1 9.7265 -1.6833 -5.1906 37 1 8.8571 -0.7461 -3.0861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229600884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:04 Heat of formation + Delta-G solvation = 56.016611 kcal Electronic energy + Delta-G solvation = -26987.725022 eV Core-core repulsion = 23085.683654 eV Total energy + Delta-G solvation = -3902.041368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73861 -39.91812 -38.52445 -37.42427 -36.27255 -35.95879 -33.46725 -32.01692 -31.07940 -30.18805 -29.74416 -27.38421 -26.26461 -24.31256 -23.13111 -22.22438 -21.56430 -20.56615 -19.60634 -18.37425 -18.28518 -17.44487 -17.09354 -16.19106 -16.12898 -15.29949 -15.16339 -15.09977 -14.51851 -14.21201 -13.98342 -13.82357 -13.58161 -13.30894 -12.80692 -12.66473 -12.45959 -12.38618 -11.98847 -11.74924 -11.67972 -11.57108 -11.16330 -11.14370 -10.83648 -10.69833 -10.59065 -10.58126 -10.29548 -9.74559 -9.63226 -9.38309 -9.07085 -8.15943 -7.96392 -7.72820 -6.32403 -4.73526 0.35261 1.03471 1.15570 1.79812 2.22737 2.35384 2.41641 2.77720 3.06518 3.15303 3.16468 3.32672 3.56750 3.88938 4.05559 4.71353 4.75676 4.79413 4.86432 5.03041 5.16267 5.25056 5.64497 5.71631 5.75534 5.84381 5.91473 6.02245 6.15224 6.23164 6.35061 6.49718 6.63147 6.75262 6.84451 7.06776 7.17215 7.27085 7.31531 7.43019 7.60788 7.72658 7.96252 8.04253 8.07732 8.41117 9.06136 10.50267 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.005181 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.625683 B = 5402.812317 C = 6119.189219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.240 3.760 3 C 0.047 3.953 4 C -0.119 4.119 5 C -0.053 4.053 6 C -0.162 4.162 7 C 0.226 3.774 8 O -0.282 6.282 9 C 0.236 3.764 10 H 0.043 0.957 11 C -0.556 4.556 12 H 0.074 0.926 13 C 0.086 3.914 14 N -0.834 5.834 15 Si 0.900 3.100 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.270 1.270 19 C -0.050 4.050 20 C -0.046 4.046 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.122 4.122 25 C -0.053 4.053 26 N 0.031 4.969 27 O -0.147 6.147 28 O -0.129 6.129 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.272 0.728 33 H 0.163 0.837 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 8.549 1.632 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.060 5.060 2 C -0.076 4.076 3 C 0.043 3.957 4 C -0.140 4.140 5 C -0.071 4.071 6 C -0.182 4.182 7 C 0.173 3.827 8 O -0.192 6.192 9 C 0.184 3.816 10 H 0.061 0.939 11 C -0.591 4.591 12 H 0.092 0.908 13 C -0.124 4.124 14 N -0.467 5.467 15 Si 0.727 3.273 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.195 1.195 19 C -0.050 4.050 20 C -0.065 4.065 21 C -0.166 4.166 22 C -0.157 4.157 23 C -0.165 4.165 24 C -0.140 4.140 25 C -0.137 4.137 26 N 0.562 4.438 27 O -0.368 6.368 28 O -0.355 6.355 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.181 0.819 32 H 0.083 0.917 33 H 0.180 0.820 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.206 8.682 1.868 8.883 hybrid contribution 1.038 -0.981 0.627 1.560 sum 1.245 7.701 2.495 8.191 Atomic orbital electron populations 1.81227 1.11484 1.06596 1.06710 1.25455 0.92473 0.94837 0.94819 1.15124 0.84333 0.97611 0.98649 1.20893 0.94381 0.99112 0.99629 1.21163 0.93106 0.96611 0.96208 1.21768 1.02645 0.96240 0.97507 1.18369 0.87494 0.87710 0.89105 1.86481 1.25782 1.48817 1.58087 1.19282 0.74045 0.95095 0.93193 0.93920 1.21340 1.35265 0.93992 1.08538 0.90796 1.25086 0.93685 0.97491 0.96130 1.69793 1.34939 1.09926 1.32044 0.86440 0.79605 0.79258 0.82023 1.19999 1.20608 1.19499 1.19610 0.95696 0.96506 0.93230 1.21868 1.00999 0.92605 0.91049 1.21176 0.97833 1.00577 0.97034 1.20900 0.97577 0.97336 0.99841 1.20722 1.00674 0.98073 0.97046 1.20703 0.97396 1.00284 0.95659 1.20066 0.90050 0.99964 1.03662 1.43161 0.98616 1.01078 1.00898 1.94518 1.56586 1.82041 1.03700 1.94561 1.55402 1.07255 1.78294 0.83622 0.83574 0.81908 0.91683 0.82005 0.87605 0.87876 0.87590 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.60 18.54 41.84 0.78 -5.83 16 2 C 0.24 3.83 14.81 -22.48 -0.33 3.49 16 3 C 0.05 0.71 5.73 -106.96 -0.61 0.09 16 4 C -0.12 -1.29 9.75 -39.16 -0.38 -1.67 16 5 C -0.05 -0.55 10.03 -39.67 -0.40 -0.95 16 6 C -0.16 -2.32 8.69 -39.35 -0.34 -2.66 16 7 C 0.23 4.17 6.58 -39.28 -0.26 3.92 16 8 O -0.28 -6.15 8.10 -19.44 -0.16 -6.30 16 9 C 0.24 4.95 2.11 -29.03 -0.06 4.89 16 10 H 0.04 0.79 6.27 -51.93 -0.33 0.46 16 11 C -0.56 -12.50 7.91 -34.44 -0.27 -12.77 16 12 H 0.07 1.58 7.81 -52.48 -0.41 1.17 16 13 C 0.09 2.03 5.24 -17.82 -0.09 1.94 16 14 N -0.83 -20.57 8.51 55.43 0.47 -20.10 16 15 Si 0.90 18.87 29.54 -169.99 -5.02 13.85 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 C -0.05 -1.07 4.80 -104.63 -0.50 -1.57 16 20 C -0.05 -1.04 7.46 -39.58 -0.30 -1.33 16 21 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 22 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 23 C -0.15 -2.58 10.05 -39.59 -0.40 -2.98 16 24 C -0.12 -2.32 9.68 -39.58 -0.38 -2.71 16 25 C -0.05 -0.98 6.17 -79.37 -0.49 -1.47 16 26 N 0.03 0.66 3.48 34.24 0.12 0.77 16 27 O -0.15 -3.14 19.26 -29.46 -0.57 -3.71 16 28 O -0.13 -2.88 19.25 -29.46 -0.57 -3.45 16 29 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 30 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.16 2.27 5.65 -52.48 -0.30 1.97 16 32 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 33 H 0.16 4.01 5.50 -52.49 -0.29 3.72 16 34 H 0.11 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -27.52 338.97 -8.45 -35.96 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -2.99 Total: 3.67 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -5.62 Total: -19.99 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 1.37 Total: -25.15 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.29 Total: -13.46 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.52 -8.45 -35.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229600884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.981 kcal (2) G-P(sol) polarization free energy of solvation -27.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds