Wall clock time and date at job start Tue Mar 31 2020 14:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39661 * 120.12593 * 222.57678 * 3 2 1 5 5 C 1.37952 * 119.96310 * 179.72593 * 4 3 2 6 6 C 1.38292 * 120.20962 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.25420 * 0.02562 * 6 5 4 8 8 O 1.35905 * 119.98521 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99912 * 354.59256 * 8 7 6 10 10 H 1.08998 * 109.47042 * 324.13571 * 9 8 7 11 11 C 1.50703 * 109.46891 * 84.13672 * 9 8 7 12 12 H 1.08004 * 119.99538 * 239.99922 * 11 9 8 13 13 C 1.37870 * 120.00081 * 60.00031 * 11 9 8 14 14 N 1.31520 * 120.00234 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 120.00034 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47281 * 89.99808 * 15 13 11 17 17 H 1.48501 * 109.46982 * 210.00294 * 15 13 11 18 18 H 1.48502 * 109.46724 * 329.99664 * 15 13 11 19 19 C 1.50700 * 109.46870 * 204.13613 * 9 8 7 20 20 C 1.38229 * 120.00007 * 324.72338 * 19 9 8 21 21 C 1.38241 * 119.99748 * 179.81261 * 20 19 9 22 22 C 1.38235 * 119.99877 * 0.39579 * 21 20 19 23 23 C 1.38234 * 120.00145 * 359.86329 * 22 21 20 24 24 C 1.38231 * 119.99837 * 359.94890 * 23 22 21 25 25 C 1.38487 * 120.03300 * 359.97438 * 7 6 5 26 26 N 1.48020 * 120.10409 * 179.97438 * 25 7 6 27 27 O 1.21805 * 120.00060 * 269.98169 * 26 25 7 28 28 O 1.21798 * 120.00120 * 89.97774 * 26 25 7 29 29 H 1.08008 * 120.02206 * 359.70677 * 4 3 2 30 30 H 1.08000 * 119.89766 * 180.02562 * 5 4 3 31 31 H 1.08005 * 119.87276 * 180.02562 * 6 5 4 32 32 H 0.97003 * 120.00043 * 180.02562 * 14 13 11 33 33 H 1.07994 * 120.00517 * 0.02562 * 20 19 9 34 34 H 1.08004 * 120.00316 * 180.23338 * 21 20 19 35 35 H 1.08001 * 119.99912 * 179.83076 * 22 21 20 36 36 H 1.07998 * 120.00142 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00029 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2685 0.8905 0.8173 5 6 4.6480 0.8843 0.8188 6 6 5.3408 -0.0011 0.0136 7 6 4.6535 -0.8893 -0.8022 8 8 5.3398 -1.7568 -1.5918 9 6 6.7620 -1.6202 -1.6222 10 1 7.0272 -0.5650 -1.5577 11 6 7.3628 -2.3614 -0.4556 12 1 7.9512 -1.8291 0.2771 13 6 7.1612 -3.7189 -0.3237 14 7 6.4443 -4.3670 -1.2157 15 14 7.9053 -4.6375 1.1227 16 1 6.9461 -4.6362 2.2563 17 1 8.1973 -6.0374 0.7227 18 1 9.1643 -3.9688 1.5389 19 6 7.2943 -2.1941 -2.9099 20 6 6.6947 -3.3061 -3.4710 21 6 7.1806 -3.8302 -4.6544 22 6 8.2712 -3.2472 -5.2721 23 6 8.8742 -2.1385 -4.7082 24 6 8.3858 -1.6121 -3.5270 25 6 3.2686 -0.8920 -0.8119 26 7 2.5341 -1.8381 -1.6816 27 8 2.2356 -1.5151 -2.8174 28 8 2.2282 -2.9397 -1.2614 29 1 2.7306 1.5833 1.4476 30 1 5.1887 1.5726 1.4516 31 1 6.4208 -0.0015 0.0194 32 1 6.3022 -5.3221 -1.1226 33 1 5.8445 -3.7633 -2.9869 34 1 6.7099 -4.6967 -5.0948 35 1 8.6526 -3.6583 -6.1952 36 1 9.7265 -1.6833 -5.1906 37 1 8.8571 -0.7461 -3.0861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229600884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:04 Heat of formation + Delta-G solvation = 43.656339 kcal Electronic energy + Delta-G solvation = -26988.261004 eV Core-core repulsion = 23085.683654 eV Total energy + Delta-G solvation = -3902.577350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.29306 -41.26278 -39.92007 -38.79687 -37.62264 -37.55970 -35.08461 -33.25693 -32.54389 -31.55059 -31.16305 -28.97106 -27.68491 -25.72068 -24.57993 -23.55383 -23.00604 -22.03947 -21.00841 -19.92921 -19.73209 -18.95829 -18.52466 -17.62537 -17.59063 -16.80529 -16.66985 -16.12258 -15.92787 -15.59673 -15.37114 -15.20738 -14.95348 -14.64509 -14.24332 -14.01449 -13.91301 -13.68272 -13.30959 -13.17417 -13.04939 -12.92771 -12.82456 -12.78865 -12.39216 -12.31829 -12.27135 -12.09347 -11.81257 -11.26266 -11.12588 -10.82125 -10.52397 -9.52496 -9.38972 -9.25983 -8.02875 -6.48639 -0.81911 -0.65782 0.03988 0.36751 0.74016 0.92670 1.09215 1.39379 1.43200 1.49929 1.57013 2.08652 2.33741 2.44362 2.58987 3.14714 3.27281 3.59221 3.79406 3.84137 4.06336 4.17631 4.26925 4.33512 4.47188 4.51252 4.66715 4.80968 4.92976 5.06968 5.12459 5.13843 5.16615 5.37634 5.43649 5.55308 5.62485 5.81498 5.81649 5.93586 6.04871 6.20021 6.35887 6.40694 6.49600 6.79740 7.32380 8.75416 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.005181 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.625683 B = 5402.812317 C = 6119.189219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.252 3.748 3 C 0.032 3.968 4 C -0.080 4.080 5 C -0.022 4.022 6 C -0.161 4.161 7 C 0.190 3.810 8 O -0.316 6.316 9 C 0.236 3.764 10 H 0.065 0.935 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.041 3.959 14 N -0.860 5.860 15 Si 0.947 3.053 16 H -0.279 1.279 17 H -0.294 1.294 18 H -0.258 1.258 19 C -0.076 4.076 20 C -0.073 4.073 21 C -0.164 4.164 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.080 4.080 26 N 0.033 4.967 27 O -0.153 6.153 28 O -0.175 6.175 29 H 0.196 0.804 30 H 0.206 0.794 31 H 0.170 0.830 32 H 0.261 0.739 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 12.078 3.065 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.063 4.063 3 C 0.028 3.972 4 C -0.101 4.101 5 C -0.039 4.039 6 C -0.181 4.181 7 C 0.139 3.861 8 O -0.227 6.227 9 C 0.184 3.816 10 H 0.083 0.917 11 C -0.592 4.592 12 H 0.102 0.898 13 C -0.165 4.165 14 N -0.494 5.494 15 Si 0.773 3.227 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.182 1.182 19 C -0.076 4.076 20 C -0.092 4.092 21 C -0.183 4.183 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.147 4.147 25 C -0.164 4.164 26 N 0.560 4.440 27 O -0.378 6.378 28 O -0.394 6.394 29 H 0.213 0.787 30 H 0.223 0.777 31 H 0.187 0.813 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.405 12.185 3.349 12.863 hybrid contribution 0.358 -1.887 0.177 1.929 sum 2.763 10.297 3.526 11.229 Atomic orbital electron populations 1.81233 1.12314 1.07630 1.07767 1.25634 0.92666 0.94014 0.94006 1.15396 0.83766 0.98433 0.99630 1.21604 0.94755 0.96847 0.96858 1.21814 0.92832 0.95062 0.94202 1.22015 1.03052 0.95904 0.97117 1.18811 0.87485 0.89146 0.90625 1.86400 1.25863 1.50773 1.59703 1.19290 0.73851 0.95963 0.92522 0.91693 1.21640 1.34653 0.93861 1.09044 0.89801 1.25737 0.94363 0.98688 0.97675 1.70046 1.36740 1.09130 1.33488 0.85720 0.79277 0.77802 0.79882 1.20440 1.21988 1.18182 1.19903 0.96828 0.96750 0.94132 1.21640 1.01027 0.94004 0.92503 1.21353 0.99010 1.01184 0.96728 1.21270 0.96381 0.97146 1.00657 1.21197 1.01097 0.97390 0.96308 1.21052 0.96555 1.00923 0.96127 1.20336 0.90153 1.00793 1.05083 1.43672 0.98074 1.01254 1.01019 1.94464 1.56574 1.81938 1.04819 1.94537 1.57305 1.08967 1.78541 0.78658 0.77684 0.81307 0.92934 0.85576 0.87043 0.84580 0.83726 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -14.09 18.54 19.00 0.35 -13.74 16 2 C 0.25 7.83 14.81 88.33 1.31 9.14 16 3 C 0.03 0.91 5.73 -21.38 -0.12 0.78 16 4 C -0.08 -1.32 9.75 22.55 0.22 -1.10 16 5 C -0.02 -0.33 10.03 22.21 0.22 -0.10 16 6 C -0.16 -4.14 8.69 22.42 0.19 -3.95 16 7 C 0.19 7.03 6.58 22.47 0.15 7.18 16 8 O -0.32 -14.33 8.10 -92.49 -0.75 -15.08 16 9 C 0.24 9.96 2.11 29.10 0.06 10.02 16 10 H 0.07 2.31 6.27 -2.39 -0.01 2.30 16 11 C -0.56 -24.93 7.91 25.60 0.20 -24.73 16 12 H 0.08 3.46 7.81 -2.91 -0.02 3.44 16 13 C 0.04 2.00 5.24 84.65 0.44 2.44 16 14 N -0.86 -45.04 8.51 21.45 0.18 -44.85 16 15 Si 0.95 39.34 29.54 68.60 2.03 41.37 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 19 C -0.08 -3.30 4.80 -19.87 -0.10 -3.39 16 20 C -0.07 -3.41 7.46 22.27 0.17 -3.25 16 21 C -0.16 -6.69 10.05 22.27 0.22 -6.47 16 22 C -0.14 -4.67 10.05 22.27 0.22 -4.44 16 23 C -0.14 -4.61 10.05 22.27 0.22 -4.39 16 24 C -0.13 -4.68 9.68 22.27 0.22 -4.47 16 25 C -0.08 -2.98 6.17 36.75 0.23 -2.75 16 26 N 0.03 1.46 3.48 -45.57 -0.16 1.31 16 27 O -0.15 -6.95 19.26 18.88 0.36 -6.59 16 28 O -0.18 -8.50 19.25 18.89 0.36 -8.14 16 29 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.21 0.85 8.06 -2.91 -0.02 0.82 16 31 H 0.17 4.15 5.65 -2.91 -0.02 4.13 16 32 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 33 H 0.13 6.84 5.50 -2.91 -0.02 6.82 16 34 H 0.11 4.21 8.06 -2.91 -0.02 4.18 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -67.63 338.97 7.38 -60.24 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.14 Total: 14.94 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.86 Total: -29.46 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.38 Total: -57.29 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.02 Total: -29.80 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -67.63 7.38 -60.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229600884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.899 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds