Wall clock time and date at job start Tue Mar 31 2020 14:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39674 * 120.12411 * 301.82489 * 3 2 1 5 5 C 1.37953 * 119.95985 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.21135 * 359.97438 * 5 4 3 7 7 C 1.38821 * 120.24891 * 359.97438 * 6 5 4 8 8 O 1.35911 * 119.97502 * 180.02562 * 7 6 5 9 9 C 1.42893 * 117.00144 * 5.13148 * 8 7 6 10 10 H 1.08995 * 109.47400 * 35.92599 * 9 8 7 11 11 C 1.50706 * 109.47396 * 275.91659 * 9 8 7 12 12 H 1.07996 * 119.99767 * 333.78423 * 11 9 8 13 13 C 1.37882 * 119.99815 * 153.77460 * 11 9 8 14 14 N 1.31509 * 120.00061 * 353.80021 * 13 11 9 15 15 Si 1.86798 * 119.99682 * 173.79287 * 13 11 9 16 16 H 1.48508 * 109.46835 * 60.00425 * 15 13 11 17 17 H 1.48500 * 109.47024 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47316 * 300.00721 * 15 13 11 19 19 C 1.50709 * 109.46855 * 155.92268 * 9 8 7 20 20 C 1.38227 * 120.00068 * 37.84397 * 19 9 8 21 21 C 1.38236 * 119.99756 * 179.78718 * 20 19 9 22 22 C 1.38236 * 120.00260 * 0.44472 * 21 20 19 23 23 C 1.38234 * 119.99462 * 359.80838 * 22 21 20 24 24 C 1.38227 * 120.00543 * 359.97438 * 23 22 21 25 25 C 1.38477 * 120.04095 * 0.29040 * 7 6 5 26 26 N 1.48018 * 120.10672 * 179.70407 * 25 7 6 27 27 O 1.21804 * 119.99902 * 90.00020 * 26 25 7 28 28 O 1.21798 * 119.99780 * 270.00151 * 26 25 7 29 29 H 1.08001 * 120.01721 * 0.04871 * 4 3 2 30 30 H 1.07991 * 119.89383 * 179.97438 * 5 4 3 31 31 H 1.08001 * 119.87171 * 179.97438 * 6 5 4 32 32 H 0.96996 * 120.00303 * 5.07988 * 14 13 11 33 33 H 1.07999 * 120.00102 * 0.02562 * 20 19 9 34 34 H 1.08005 * 120.00102 * 180.27301 * 21 20 19 35 35 H 1.07995 * 120.00030 * 179.83141 * 22 21 20 36 36 H 1.08004 * 119.99633 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.00313 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2692 -0.6361 1.0265 5 6 4.6487 -0.6329 1.0234 6 6 5.3409 -0.0014 0.0062 7 6 4.6527 0.6333 -1.0188 8 8 5.3386 1.2518 -2.0159 9 6 6.7608 1.1139 -2.0075 10 1 7.0271 0.1167 -1.6571 11 6 7.3603 2.1463 -1.0877 12 1 6.8348 3.0706 -0.8981 13 6 8.5794 1.9108 -0.4883 14 7 9.1617 0.7390 -0.6205 15 14 9.4041 3.2561 0.5113 16 1 8.5199 3.6479 1.6383 17 1 10.6956 2.7546 1.0459 18 1 9.6525 4.4357 -0.3561 19 6 7.2933 1.3148 -3.4030 20 6 6.7266 2.2678 -4.2284 21 6 7.2178 2.4551 -5.5069 22 6 8.2698 1.6830 -5.9631 23 6 8.8331 0.7264 -5.1394 24 6 8.3448 0.5421 -3.8595 25 6 3.2680 0.6412 -1.0231 26 7 2.5328 1.3230 -2.1119 27 8 2.2269 0.7085 -3.1181 28 8 2.2337 2.4986 -2.0017 29 1 2.7317 -1.1309 1.8219 30 1 5.1898 -1.1252 1.8178 31 1 6.4209 -0.0019 0.0095 32 1 8.7708 0.0657 -1.1990 33 1 5.9025 2.8687 -3.8732 34 1 6.7780 3.2027 -6.1503 35 1 8.6518 1.8275 -6.9629 36 1 9.6553 0.1234 -5.4957 37 1 8.7846 -0.2056 -3.2161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229600885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:07 Heat of formation + Delta-G solvation = 43.184676 kcal Electronic energy + Delta-G solvation = -26677.245555 eV Core-core repulsion = 22774.647752 eV Total energy + Delta-G solvation = -3902.597802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.00222 -40.19698 -38.82949 -37.72553 -36.43962 -36.22461 -33.95159 -32.12652 -31.35667 -30.36163 -30.16717 -26.97768 -26.47826 -24.38228 -23.37428 -22.48704 -21.89429 -20.89230 -19.79372 -18.60959 -18.55136 -17.70890 -17.47131 -16.66740 -16.42876 -15.57663 -15.24491 -15.05259 -14.52847 -14.39025 -14.12438 -14.01721 -13.80578 -13.48780 -13.00960 -12.92986 -12.75729 -12.55134 -12.24776 -12.12165 -11.93734 -11.59560 -11.39660 -11.12980 -11.00086 -10.85536 -10.79370 -10.60399 -10.41592 -10.19202 -9.58742 -9.46340 -8.89916 -8.43975 -8.36545 -8.01955 -6.91618 -4.72608 0.21224 0.77725 0.95517 1.54142 1.91309 1.96553 2.22908 2.64975 3.09738 3.18114 3.23473 3.39440 3.42030 3.65795 4.11446 4.38958 4.54466 4.69734 4.82469 4.84478 4.98115 5.12193 5.40412 5.42519 5.55141 5.62986 5.74193 5.82257 6.00365 6.06297 6.14844 6.17913 6.33609 6.48116 6.52068 6.59970 6.98492 7.01478 7.05651 7.13098 7.28034 7.47015 7.56113 7.82290 7.98772 8.23318 8.96815 10.41418 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.005186 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.202382 B = 5397.880302 C = 6921.836481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C 0.239 3.761 3 C 0.043 3.957 4 C -0.106 4.106 5 C -0.052 4.052 6 C -0.147 4.147 7 C 0.216 3.784 8 O -0.305 6.305 9 C 0.226 3.774 10 H 0.052 0.948 11 C -0.616 4.616 12 H 0.069 0.931 13 C 0.039 3.961 14 N -0.885 5.885 15 Si 1.069 2.931 16 H -0.282 1.282 17 H -0.277 1.277 18 H -0.282 1.282 19 C -0.046 4.046 20 C -0.102 4.102 21 C -0.125 4.125 22 C -0.140 4.140 23 C -0.122 4.122 24 C -0.112 4.112 25 C -0.047 4.047 26 N 0.028 4.972 27 O -0.140 6.140 28 O -0.135 6.135 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.173 0.827 32 H 0.269 0.731 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 -3.863 0.927 4.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.056 5.056 2 C -0.077 4.077 3 C 0.039 3.961 4 C -0.127 4.127 5 C -0.070 4.070 6 C -0.167 4.167 7 C 0.165 3.835 8 O -0.217 6.217 9 C 0.172 3.828 10 H 0.070 0.930 11 C -0.653 4.653 12 H 0.088 0.912 13 C -0.169 4.169 14 N -0.519 5.519 15 Si 0.895 3.105 16 H -0.208 1.208 17 H -0.202 1.202 18 H -0.208 1.208 19 C -0.047 4.047 20 C -0.120 4.120 21 C -0.143 4.143 22 C -0.158 4.158 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.131 4.131 26 N 0.560 4.440 27 O -0.363 6.363 28 O -0.359 6.359 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.190 0.810 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.533 -3.787 2.263 5.087 hybrid contribution -0.753 0.005 -1.242 1.453 sum -3.286 -3.783 1.020 5.114 Atomic orbital electron populations 1.81241 1.11391 1.06854 1.06126 1.25382 0.92369 0.94866 0.95074 1.15089 0.84468 1.01190 0.95373 1.21017 0.94366 1.00199 0.97160 1.21256 0.93035 0.95220 0.97471 1.21994 1.03456 0.98119 0.93143 1.18219 0.87220 0.88922 0.89130 1.86095 1.25325 1.66590 1.43652 1.19517 0.72394 0.99147 0.91703 0.93025 1.22230 1.08056 1.05466 1.29520 0.91236 1.25956 0.94041 1.00000 0.96862 1.70941 1.41894 1.03867 1.35217 0.83514 0.76577 0.74418 0.76032 1.20812 1.20238 1.20792 1.20041 0.95889 0.94882 0.93864 1.20892 0.99760 0.97821 0.93516 1.21042 0.97356 0.99745 0.96186 1.20950 0.97848 0.97557 0.99431 1.20963 0.99932 0.98865 0.94281 1.20885 0.96998 0.99750 0.95420 1.20027 0.89666 1.09869 0.93562 1.43224 0.98710 1.00770 1.01342 1.94539 1.55925 1.66875 1.18914 1.94550 1.55972 0.99359 1.86035 0.83210 0.83086 0.80982 0.91839 0.86490 0.86794 0.86947 0.86717 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.22 18.54 41.83 0.78 -5.44 16 2 C 0.24 3.61 14.81 -22.48 -0.33 3.27 16 3 C 0.04 0.62 5.73 -106.95 -0.61 0.00 16 4 C -0.11 -1.14 9.75 -39.15 -0.38 -1.52 16 5 C -0.05 -0.58 10.03 -39.66 -0.40 -0.98 16 6 C -0.15 -2.29 8.69 -39.34 -0.34 -2.64 16 7 C 0.22 3.92 6.58 -39.28 -0.26 3.66 16 8 O -0.31 -6.40 8.79 -19.46 -0.17 -6.57 16 9 C 0.23 4.84 1.67 -29.03 -0.05 4.79 16 10 H 0.05 1.10 4.63 -51.93 -0.24 0.86 16 11 C -0.62 -14.45 7.65 -34.44 -0.26 -14.71 16 12 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 13 C 0.04 0.91 5.45 -17.82 -0.10 0.81 16 14 N -0.89 -21.33 13.63 55.43 0.76 -20.57 16 15 Si 1.07 21.71 29.91 -169.99 -5.08 16.62 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 C -0.05 -0.97 4.97 -104.62 -0.52 -1.49 16 20 C -0.10 -2.04 9.36 -39.59 -0.37 -2.41 16 21 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.14 -2.26 10.05 -39.58 -0.40 -2.66 16 23 C -0.12 -2.08 10.05 -39.59 -0.40 -2.48 16 24 C -0.11 -2.18 9.46 -39.58 -0.37 -2.56 16 25 C -0.05 -0.82 6.17 -79.37 -0.49 -1.31 16 26 N 0.03 0.55 3.48 34.24 0.12 0.67 16 27 O -0.14 -2.77 19.26 -29.46 -0.57 -3.34 16 28 O -0.13 -2.72 19.25 -29.46 -0.57 -3.29 16 29 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.17 3.01 5.65 -52.49 -0.30 2.71 16 32 H 0.27 6.28 5.10 -40.82 -0.21 6.07 16 33 H 0.12 2.40 7.71 -52.49 -0.40 2.00 16 34 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 35 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.12 2.30 6.79 -52.48 -0.36 1.94 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -27.29 342.62 -8.08 -35.38 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.83 Total: 4.14 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -5.68 Total: -22.77 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 1.65 Total: -25.35 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.31 Total: -13.19 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.08 Total: 16.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.29 -8.08 -35.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229600885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.561 kcal (2) G-P(sol) polarization free energy of solvation -27.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds