Wall clock time and date at job start Tue Mar 31 2020 14:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39674 * 120.12411 * 301.82489 * 3 2 1 5 5 C 1.37953 * 119.95985 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.21135 * 359.97438 * 5 4 3 7 7 C 1.38821 * 120.24891 * 359.97438 * 6 5 4 8 8 O 1.35911 * 119.97502 * 180.02562 * 7 6 5 9 9 C 1.42893 * 117.00144 * 5.13148 * 8 7 6 10 10 H 1.08995 * 109.47400 * 35.92599 * 9 8 7 11 11 C 1.50706 * 109.47396 * 275.91659 * 9 8 7 12 12 H 1.07996 * 119.99767 * 333.78423 * 11 9 8 13 13 C 1.37882 * 119.99815 * 153.77460 * 11 9 8 14 14 N 1.31509 * 120.00061 * 353.80021 * 13 11 9 15 15 Si 1.86798 * 119.99682 * 173.79287 * 13 11 9 16 16 H 1.48508 * 109.46835 * 60.00425 * 15 13 11 17 17 H 1.48500 * 109.47024 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47316 * 300.00721 * 15 13 11 19 19 C 1.50709 * 109.46855 * 155.92268 * 9 8 7 20 20 C 1.38227 * 120.00068 * 37.84397 * 19 9 8 21 21 C 1.38236 * 119.99756 * 179.78718 * 20 19 9 22 22 C 1.38236 * 120.00260 * 0.44472 * 21 20 19 23 23 C 1.38234 * 119.99462 * 359.80838 * 22 21 20 24 24 C 1.38227 * 120.00543 * 359.97438 * 23 22 21 25 25 C 1.38477 * 120.04095 * 0.29040 * 7 6 5 26 26 N 1.48018 * 120.10672 * 179.70407 * 25 7 6 27 27 O 1.21804 * 119.99902 * 90.00020 * 26 25 7 28 28 O 1.21798 * 119.99780 * 270.00151 * 26 25 7 29 29 H 1.08001 * 120.01721 * 0.04871 * 4 3 2 30 30 H 1.07991 * 119.89383 * 179.97438 * 5 4 3 31 31 H 1.08001 * 119.87171 * 179.97438 * 6 5 4 32 32 H 0.96996 * 120.00303 * 5.07988 * 14 13 11 33 33 H 1.07999 * 120.00102 * 0.02562 * 20 19 9 34 34 H 1.08005 * 120.00102 * 180.27301 * 21 20 19 35 35 H 1.07995 * 120.00030 * 179.83141 * 22 21 20 36 36 H 1.08004 * 119.99633 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.00313 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2692 -0.6361 1.0265 5 6 4.6487 -0.6329 1.0234 6 6 5.3409 -0.0014 0.0062 7 6 4.6527 0.6333 -1.0188 8 8 5.3386 1.2518 -2.0159 9 6 6.7608 1.1139 -2.0075 10 1 7.0271 0.1167 -1.6571 11 6 7.3603 2.1463 -1.0877 12 1 6.8348 3.0706 -0.8981 13 6 8.5794 1.9108 -0.4883 14 7 9.1617 0.7390 -0.6205 15 14 9.4041 3.2561 0.5113 16 1 8.5199 3.6479 1.6383 17 1 10.6956 2.7546 1.0459 18 1 9.6525 4.4357 -0.3561 19 6 7.2933 1.3148 -3.4030 20 6 6.7266 2.2678 -4.2284 21 6 7.2178 2.4551 -5.5069 22 6 8.2698 1.6830 -5.9631 23 6 8.8331 0.7264 -5.1394 24 6 8.3448 0.5421 -3.8595 25 6 3.2680 0.6412 -1.0231 26 7 2.5328 1.3230 -2.1119 27 8 2.2269 0.7085 -3.1181 28 8 2.2337 2.4986 -2.0017 29 1 2.7317 -1.1309 1.8219 30 1 5.1898 -1.1252 1.8178 31 1 6.4209 -0.0019 0.0095 32 1 8.7708 0.0657 -1.1990 33 1 5.9025 2.8687 -3.8732 34 1 6.7780 3.2027 -6.1503 35 1 8.6518 1.8275 -6.9629 36 1 9.6553 0.1234 -5.4957 37 1 8.7846 -0.2056 -3.2161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229600885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:07 Heat of formation + Delta-G solvation = 31.522496 kcal Electronic energy + Delta-G solvation = -26677.751265 eV Core-core repulsion = 22774.647752 eV Total energy + Delta-G solvation = -3903.103512 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.48013 -41.57214 -40.19771 -39.07396 -37.77677 -37.69581 -35.61987 -33.37662 -32.77907 -31.77990 -31.48993 -28.57893 -27.84875 -25.87748 -24.82331 -23.81825 -23.27247 -22.33001 -21.17283 -20.09650 -19.99617 -19.24633 -18.93212 -18.06432 -17.84979 -16.92876 -16.56962 -16.31849 -15.88427 -15.70326 -15.69924 -15.41213 -15.13817 -14.78284 -14.47933 -14.24152 -14.17283 -13.92072 -13.65362 -13.39282 -13.22028 -13.02708 -12.90057 -12.71641 -12.54040 -12.44969 -12.23642 -12.03899 -11.99364 -11.70579 -11.11200 -10.75048 -10.62434 -9.80506 -9.75057 -9.52214 -8.74290 -6.55994 -0.97744 -0.79074 -0.19342 0.15467 0.48674 0.52189 1.00927 1.45880 1.53952 1.57788 1.77857 1.83712 2.27525 2.37097 2.46154 2.91665 3.06981 3.37808 3.57593 3.63168 3.87489 3.95700 4.05104 4.11661 4.18716 4.29470 4.35119 4.63734 4.70341 4.73057 4.89235 4.98479 5.01222 5.10026 5.15384 5.24636 5.51572 5.58972 5.60366 5.73212 5.83596 5.86236 6.14659 6.23894 6.25636 6.40806 7.18137 8.59238 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.005186 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.202382 B = 5397.880302 C = 6921.836481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.253 3.747 3 C 0.038 3.962 4 C -0.066 4.066 5 C -0.024 4.024 6 C -0.158 4.158 7 C 0.183 3.817 8 O -0.331 6.331 9 C 0.235 3.765 10 H 0.047 0.953 11 C -0.622 4.622 12 H 0.043 0.957 13 C 0.011 3.989 14 N -0.900 5.900 15 Si 1.102 2.898 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.285 1.285 19 C -0.075 4.075 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.064 4.064 26 N 0.028 4.972 27 O -0.150 6.150 28 O -0.160 6.160 29 H 0.204 0.796 30 H 0.200 0.800 31 H 0.151 0.849 32 H 0.267 0.733 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -5.132 1.844 5.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.063 4.063 3 C 0.033 3.967 4 C -0.087 4.087 5 C -0.041 4.041 6 C -0.178 4.178 7 C 0.134 3.866 8 O -0.244 6.244 9 C 0.181 3.819 10 H 0.064 0.936 11 C -0.658 4.658 12 H 0.062 0.938 13 C -0.193 4.193 14 N -0.535 5.535 15 Si 0.924 3.076 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.211 1.211 19 C -0.076 4.076 20 C -0.145 4.145 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.138 4.138 24 C -0.148 4.148 25 C -0.148 4.148 26 N 0.556 4.444 27 O -0.373 6.373 28 O -0.381 6.381 29 H 0.221 0.779 30 H 0.217 0.783 31 H 0.169 0.831 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.951 -5.044 3.187 6.277 hybrid contribution -0.991 0.314 -1.535 1.853 sum -2.942 -4.731 1.652 5.811 Atomic orbital electron populations 1.81258 1.12063 1.07723 1.06885 1.25415 0.92352 0.94153 0.94399 1.15324 0.84090 1.01691 0.95580 1.21665 0.94058 0.96884 0.96072 1.21780 0.93307 0.92647 0.96385 1.21971 1.02635 0.99178 0.94019 1.18543 0.87509 0.90671 0.89863 1.86027 1.24970 1.68116 1.45289 1.19293 0.72703 0.98027 0.91833 0.93561 1.22213 1.08214 1.04889 1.30535 0.93822 1.26796 0.94287 1.00856 0.97394 1.70981 1.42235 1.04285 1.35991 0.83085 0.76208 0.72707 0.75586 1.19365 1.20005 1.21074 1.20186 0.97020 0.96168 0.94201 1.20903 1.00126 0.98306 0.95172 1.21391 0.97478 1.00251 0.95149 1.21419 0.96519 0.95967 1.00937 1.21380 1.00256 0.99006 0.93111 1.20993 0.97067 0.99924 0.96818 1.20204 0.89374 1.11337 0.93863 1.43585 0.98390 1.00633 1.01757 1.94504 1.56245 1.66748 1.19847 1.94526 1.56985 1.00164 1.86383 0.77902 0.78307 0.83099 0.92154 0.88539 0.84094 0.82753 0.83477 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -12.76 18.54 19.00 0.35 -12.41 16 2 C 0.25 7.25 14.81 88.33 1.31 8.56 16 3 C 0.04 1.00 5.73 -21.37 -0.12 0.88 16 4 C -0.07 -1.12 9.75 22.55 0.22 -0.90 16 5 C -0.02 -0.44 10.03 22.22 0.22 -0.22 16 6 C -0.16 -4.87 8.69 22.42 0.19 -4.68 16 7 C 0.18 6.90 6.58 22.47 0.15 7.05 16 8 O -0.33 -14.88 8.79 -92.55 -0.81 -15.69 16 9 C 0.24 10.69 1.67 29.11 0.05 10.73 16 10 H 0.05 2.10 4.63 -2.39 -0.01 2.09 16 11 C -0.62 -30.59 7.65 25.60 0.20 -30.40 16 12 H 0.04 2.31 7.82 -2.91 -0.02 2.29 16 13 C 0.01 0.51 5.45 84.66 0.46 0.97 16 14 N -0.90 -44.16 13.63 21.45 0.29 -43.87 16 15 Si 1.10 44.15 29.91 68.60 2.05 46.20 16 16 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 17 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 19 C -0.08 -3.31 4.97 -19.86 -0.10 -3.40 16 20 C -0.13 -5.31 9.36 22.27 0.21 -5.10 16 21 C -0.12 -4.22 10.05 22.27 0.22 -4.00 16 22 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 23 C -0.12 -3.87 10.05 22.27 0.22 -3.65 16 24 C -0.13 -5.14 9.46 22.27 0.21 -4.93 16 25 C -0.06 -2.27 6.17 36.75 0.23 -2.04 16 26 N 0.03 1.14 3.48 -45.58 -0.16 0.98 16 27 O -0.15 -6.21 19.26 18.88 0.36 -5.85 16 28 O -0.16 -6.80 19.25 18.89 0.36 -6.44 16 29 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.20 1.92 8.06 -2.92 -0.02 1.90 16 31 H 0.15 5.41 5.65 -2.91 -0.02 5.40 16 32 H 0.27 12.85 5.10 -92.71 -0.47 12.38 16 33 H 0.10 4.31 7.71 -2.91 -0.02 4.29 16 34 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.11 4.50 6.79 -2.91 -0.02 4.48 16 Total: -1.00 -64.74 342.62 7.78 -56.96 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.44 Total: 14.89 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 3.89 Total: -34.79 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.49 Total: -55.29 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.09 Total: -27.97 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.05 Total: 46.20 kcal Total: -64.74 7.78 -56.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229600885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.479 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds