Wall clock time and date at job start Tue Mar 31 2020 14:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00231 * 2 1 4 4 H 1.48501 * 109.47239 * 95.00693 * 3 2 1 5 5 H 1.48497 * 109.46843 * 215.00741 * 3 2 1 6 6 H 1.48498 * 109.47040 * 335.00334 * 3 2 1 7 7 C 1.37874 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 6.04108 * 7 2 1 9 9 C 1.50697 * 120.00405 * 186.04489 * 7 2 1 10 10 H 1.08997 * 109.46916 * 4.45946 * 9 7 2 11 11 O 1.42896 * 109.47399 * 124.46002 * 9 7 2 12 12 C 1.35696 * 117.00087 * 270.00194 * 11 9 7 13 13 C 1.39271 * 120.13843 * 179.72391 * 12 11 9 14 14 C 1.38642 * 117.91712 * 179.73887 * 13 12 11 15 15 C 1.50696 * 120.98773 * 180.23442 * 14 13 12 16 16 F 1.39896 * 109.46933 * 180.30412 * 15 14 13 17 17 F 1.39905 * 109.46932 * 300.29903 * 15 14 13 18 18 F 1.39898 * 109.47552 * 60.30045 * 15 14 13 19 19 C 1.38758 * 118.01719 * 0.52450 * 14 13 12 20 20 N 1.31812 * 119.98066 * 359.72957 * 19 14 13 21 21 N 1.28349 * 122.25722 * 0.02562 * 20 19 14 22 22 C 1.50696 * 109.47335 * 244.46222 * 9 7 2 23 23 C 1.38238 * 120.00004 * 278.36404 * 22 9 7 24 24 C 1.38235 * 120.00265 * 179.80924 * 23 22 9 25 25 C 1.38240 * 119.99524 * 0.39305 * 24 23 22 26 26 C 1.38232 * 120.00262 * 359.85623 * 25 24 23 27 27 C 1.38230 * 119.99913 * 359.95710 * 26 25 24 28 28 H 0.97005 * 119.99558 * 0.02562 * 1 2 3 29 29 H 1.08002 * 121.04055 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.01285 * 179.75062 * 19 14 13 31 31 H 1.08003 * 120.00008 * 359.97438 * 23 22 9 32 32 H 1.07993 * 120.00470 * 180.22834 * 24 23 22 33 33 H 1.08004 * 119.99515 * 179.83738 * 25 24 23 34 34 H 1.08000 * 120.00034 * 179.97438 * 26 25 24 35 35 H 1.08006 * 120.00014 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6025 1.9853 1.3947 5 1 3.4898 1.4729 -0.8032 6 1 1.3978 2.6809 -0.5916 7 6 2.0045 -1.1940 0.0005 8 1 1.4689 -2.1268 -0.0975 9 6 3.5052 -1.1977 0.1380 10 1 3.8573 -0.1796 0.3041 11 8 3.8800 -2.0181 1.2463 12 6 3.9769 -1.4120 2.4565 13 6 4.3320 -2.1511 3.5822 14 6 4.4227 -1.4843 4.7944 15 6 4.8066 -2.2151 6.0551 16 9 4.8174 -1.3185 7.1289 17 9 3.8786 -3.2317 6.3058 18 9 6.0799 -2.7738 5.9011 19 6 4.1434 -0.1252 4.8132 20 7 3.8093 0.4940 3.6986 21 7 3.7285 -0.1174 2.5730 22 6 4.1238 -1.7437 -1.1231 23 6 4.2048 -3.1099 -1.3178 24 6 4.7687 -3.6107 -2.4763 25 6 5.2589 -2.7454 -3.4364 26 6 5.1826 -1.3793 -3.2394 27 6 4.6152 -0.8785 -2.0826 28 1 -0.4850 0.8401 -0.0004 29 1 4.5342 -3.2097 3.5124 30 1 4.2002 0.4252 5.7407 31 1 3.8251 -3.7860 -0.5660 32 1 4.8286 -4.6779 -2.6301 33 1 5.7019 -3.1367 -4.3404 34 1 5.5660 -0.7033 -3.9893 35 1 4.5560 0.1889 -1.9285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229746594.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:09 Heat of formation + Delta-G solvation = -113.447719 kcal Electronic energy + Delta-G solvation = -26873.106281 eV Core-core repulsion = 22421.859648 eV Total energy + Delta-G solvation = -4451.246633 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.33648 -48.83157 -48.79092 -42.43508 -40.42294 -39.03313 -35.31901 -35.06071 -33.47972 -32.23186 -31.68203 -29.34704 -28.23928 -25.82016 -25.30209 -23.95026 -23.35235 -22.00569 -20.09919 -19.96919 -19.66016 -19.39976 -18.75012 -18.11270 -17.84365 -17.30297 -16.99090 -16.36220 -16.02646 -15.65922 -15.61733 -15.52406 -15.20182 -15.00866 -14.91973 -14.87974 -14.83317 -14.62781 -14.58517 -14.23899 -13.85033 -13.62912 -13.40952 -12.98948 -12.80977 -12.38184 -12.11211 -11.89267 -11.80010 -11.71942 -11.48504 -10.91179 -10.77167 -10.17295 -9.74538 -9.51593 -8.50344 -6.62164 -0.81760 -0.18322 0.52009 0.58161 1.22654 1.28146 1.37601 1.49702 1.88560 2.21088 2.27272 2.41851 2.75433 2.87292 3.01820 3.04320 3.18691 3.22477 3.42251 3.80952 4.05395 4.10071 4.22641 4.28218 4.35532 4.40963 4.56073 4.70264 4.79098 4.84233 5.12508 5.23399 5.24601 5.64151 5.66679 5.77296 5.89717 6.18629 6.25610 6.50197 7.10803 7.45699 8.63401 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.004488 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.625907 B = 6238.012838 C = 7512.214850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.050 3.950 3 Si 0.919 3.081 4 H -0.238 1.238 5 H -0.247 1.247 6 H -0.289 1.289 7 C -0.532 4.532 8 H 0.039 0.961 9 C 0.219 3.781 10 H 0.059 0.941 11 O -0.305 6.305 12 C 0.273 3.727 13 C -0.078 4.078 14 C -0.152 4.152 15 C 0.537 3.463 16 F -0.161 7.161 17 F -0.169 7.169 18 F -0.166 7.166 19 C 0.045 3.955 20 N -0.229 5.229 21 N -0.306 5.306 22 C -0.074 4.074 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.118 4.118 27 C -0.144 4.144 28 H 0.272 0.728 29 H 0.191 0.809 30 H 0.220 0.780 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.097 -4.515 6.875 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.153 4.153 3 Si 0.742 3.258 4 H -0.161 1.161 5 H -0.171 1.171 6 H -0.216 1.216 7 C -0.569 4.569 8 H 0.057 0.943 9 C 0.165 3.835 10 H 0.077 0.923 11 O -0.209 6.209 12 C 0.086 3.914 13 C -0.109 4.109 14 C -0.164 4.164 15 C 0.482 3.518 16 F -0.142 7.142 17 F -0.150 7.150 18 F -0.147 7.147 19 C -0.123 4.123 20 N -0.069 5.069 21 N -0.163 5.163 22 C -0.075 4.075 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.136 4.136 27 C -0.162 4.162 28 H 0.082 0.918 29 H 0.208 0.792 30 H 0.236 0.764 31 H 0.131 0.869 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.542 -3.325 5.983 15.174 hybrid contribution -0.263 -0.442 0.813 0.963 sum 13.279 -3.768 6.796 15.386 Atomic orbital electron populations 1.70009 1.08182 1.28792 1.48804 1.25745 0.95276 1.02566 0.91728 0.86188 0.79152 0.78894 0.81576 1.16093 1.17148 1.21551 1.21095 0.90040 0.93832 1.51927 0.94283 1.19243 0.93427 0.90891 0.79921 0.92290 1.86270 1.81131 1.39747 1.13761 1.21662 0.90620 0.90326 0.88766 1.21587 0.97056 1.03550 0.88664 1.21195 1.04651 0.96537 0.94007 1.17414 0.75026 0.76969 0.82381 1.93218 1.96211 1.67368 1.57372 1.93271 1.65946 1.61062 1.94747 1.93264 1.40007 1.85799 1.95626 1.24585 0.95582 0.91617 1.00496 1.72923 1.08681 1.30622 0.94711 1.73063 1.15664 1.08486 1.19069 1.19997 0.96304 0.95119 0.96064 1.21031 1.00003 0.94218 0.98722 1.21445 0.98037 1.01138 0.93131 1.21470 1.00336 0.92906 1.00029 1.21363 0.99030 0.96709 0.96463 1.21124 1.00230 0.99273 0.95595 0.91827 0.79165 0.76403 0.86899 0.83429 0.82637 0.83368 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.90 13.96 21.45 0.30 -56.60 16 2 C 0.05 2.88 5.47 84.65 0.46 3.34 16 3 Si 0.92 44.98 25.90 68.60 1.78 46.76 16 4 H -0.24 -11.59 6.83 99.48 0.68 -10.91 16 5 H -0.25 -11.17 5.37 99.48 0.53 -10.64 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.53 -30.52 9.17 25.60 0.23 -30.29 16 8 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 9 C 0.22 10.58 2.03 29.10 0.06 10.64 16 10 H 0.06 2.90 3.64 -2.39 -0.01 2.90 16 11 O -0.31 -13.54 9.03 -90.15 -0.81 -14.35 16 12 C 0.27 10.92 7.53 84.87 0.64 11.56 16 13 C -0.08 -2.31 9.80 22.61 0.22 -2.09 16 14 C -0.15 -3.82 5.40 -19.64 -0.11 -3.93 16 15 C 0.54 10.75 3.35 71.23 0.24 10.99 16 16 F -0.16 -2.88 16.09 44.97 0.72 -2.16 16 17 F -0.17 -3.60 17.25 44.97 0.78 -2.82 16 18 F -0.17 -3.25 17.26 44.97 0.78 -2.48 16 19 C 0.04 1.21 10.72 84.82 0.91 2.12 16 20 N -0.23 -8.57 11.49 -57.23 -0.66 -9.23 16 21 N -0.31 -13.31 8.51 -170.22 -1.45 -14.75 16 22 C -0.07 -3.20 4.96 -19.87 -0.10 -3.30 16 23 C -0.12 -4.61 9.36 22.27 0.21 -4.40 16 24 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 25 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 26 C -0.12 -3.53 10.05 22.27 0.22 -3.30 16 27 C -0.14 -5.54 9.67 22.27 0.22 -5.33 16 28 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 29 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.22 3.98 7.26 -2.91 -0.02 3.96 16 31 H 0.11 4.32 7.73 -2.91 -0.02 4.30 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.11 4.30 6.59 -2.91 -0.02 4.28 16 Total: -1.00 -70.14 320.21 6.05 -64.09 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.96 Total: 12.05 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 3.66 Total: -20.51 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.81 Total: -80.59 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.81 Total: -14.35 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 2.28 Total: -7.46 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.78 Total: 46.76 kcal Total: -70.14 6.05 -64.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229746594.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.356 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds