Wall clock time and date at job start Tue Mar 31 2020 14:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99947 * 2 1 4 4 H 1.48499 * 109.46989 * 265.68322 * 3 2 1 5 5 H 1.48498 * 109.47382 * 25.68164 * 3 2 1 6 6 H 1.48500 * 109.47512 * 145.68277 * 3 2 1 7 7 C 1.37879 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99424 * 353.64217 * 7 2 1 9 9 C 1.50700 * 120.00154 * 173.64827 * 7 2 1 10 10 H 1.09002 * 109.46528 * 355.98086 * 9 7 2 11 11 O 1.42893 * 109.46913 * 235.98271 * 9 7 2 12 12 C 1.35694 * 117.00146 * 89.99799 * 11 9 7 13 13 C 1.39273 * 120.14137 * 180.02562 * 12 11 9 14 14 C 1.38635 * 117.92230 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.98934 * 180.02562 * 14 13 12 16 16 F 1.39911 * 109.46961 * 90.00066 * 15 14 13 17 17 F 1.39897 * 109.46954 * 209.99533 * 15 14 13 18 18 F 1.39895 * 109.47468 * 330.00173 * 15 14 13 19 19 C 1.38765 * 118.01942 * 359.97438 * 14 13 12 20 20 N 1.31819 * 119.97229 * 0.02562 * 19 14 13 21 21 N 1.28347 * 122.26181 * 359.73205 * 20 19 14 22 22 C 1.50698 * 109.47132 * 115.98054 * 9 7 2 23 23 C 1.38230 * 119.99987 * 81.73738 * 22 9 7 24 24 C 1.38237 * 120.00083 * 180.02562 * 23 22 9 25 25 C 1.38227 * 120.00210 * 0.06765 * 24 23 22 26 26 C 1.38240 * 119.99897 * 359.97438 * 25 24 23 27 27 C 1.38233 * 119.99978 * 261.86811 * 22 9 7 28 28 H 0.97004 * 119.99938 * 359.97438 * 1 2 3 29 29 H 1.08002 * 121.03620 * 359.95756 * 13 12 11 30 30 H 1.07997 * 120.01100 * 179.97438 * 19 14 13 31 31 H 1.08005 * 119.99750 * 0.10665 * 23 22 9 32 32 H 1.08004 * 119.99854 * 180.34760 * 24 23 22 33 33 H 1.08001 * 120.00462 * 179.97438 * 25 24 23 34 34 H 1.07998 * 120.00017 * 179.97438 * 26 25 24 35 35 H 1.07995 * 120.00132 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5879 1.9937 -1.3961 5 1 1.4040 2.6773 0.6067 6 1 3.4981 1.4683 0.7893 7 6 2.0046 -1.1941 0.0005 8 1 1.4695 -2.1264 0.1045 9 6 3.5046 -1.1982 -0.1438 10 1 3.8566 -0.1796 -0.3074 11 8 3.8737 -2.0142 -1.2572 12 6 3.9653 -1.4032 -2.4654 13 6 4.3197 -2.1368 -3.5950 14 6 4.3991 -1.4664 -4.8058 15 6 4.7758 -2.1925 -6.0715 16 9 3.6199 -2.6792 -6.6916 17 9 5.4332 -1.3113 -6.9366 18 9 5.6237 -3.2611 -5.7614 19 6 4.1202 -0.1071 -4.8179 20 7 3.7922 0.5078 -3.6990 21 7 3.7129 -0.1089 -2.5762 22 6 4.1287 -1.7497 1.1121 23 6 4.2115 -3.1167 1.2999 24 6 4.7835 -3.6227 2.4522 25 6 5.2713 -2.7617 3.4173 26 6 5.1877 -1.3946 3.2299 27 6 4.6158 -0.8887 2.0775 28 1 -0.4850 0.8401 0.0004 29 1 4.5266 -3.1948 -3.5295 30 1 4.1727 0.4468 -5.7435 31 1 3.8306 -3.7894 0.5457 32 1 4.8533 -4.6908 2.5963 33 1 5.7178 -3.1570 4.3177 34 1 5.5684 -0.7219 3.9841 35 1 4.5495 0.1793 1.9316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229746596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:13 Heat of formation + Delta-G solvation = -94.646511 kcal Electronic energy + Delta-G solvation = -26874.592660 eV Core-core repulsion = 22424.161309 eV Total energy + Delta-G solvation = -4450.431352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.38132 -47.89832 -47.83280 -41.03731 -38.95769 -37.55354 -33.93712 -33.25088 -31.85601 -30.78687 -30.32961 -27.73250 -26.91497 -24.49113 -23.67001 -22.59267 -22.01041 -20.54128 -18.96086 -18.72378 -18.69596 -17.51974 -17.38630 -16.72347 -16.55023 -15.98619 -15.40467 -14.80396 -14.66747 -14.61831 -14.36303 -14.28174 -14.21103 -14.03851 -13.98464 -13.43306 -13.40041 -13.01407 -12.91457 -12.84944 -12.63697 -12.19220 -11.77428 -11.36024 -11.28256 -10.76074 -10.60444 -10.50217 -10.25907 -9.85827 -9.77728 -9.36899 -8.81642 -8.65014 -8.39196 -8.02787 -6.39123 -4.48184 0.45632 1.14439 1.90282 1.94045 2.31050 3.19565 3.25850 3.30001 3.46312 3.51334 3.57709 3.88402 4.17977 4.24195 4.30283 4.38618 4.43510 4.70034 4.97423 5.05649 5.39100 5.41538 5.43557 5.55849 5.72312 5.77061 5.97494 6.05326 6.18025 6.28483 6.52647 6.59814 6.97851 7.01282 7.15162 7.23754 7.54332 7.71643 8.15846 8.67695 8.83613 9.20406 10.69950 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.004490 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.728427 B = 6233.977501 C = 7510.551886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.095 3.905 3 Si 0.868 3.132 4 H -0.236 1.236 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.083 0.917 9 C 0.205 3.795 10 H 0.068 0.932 11 O -0.299 6.299 12 C 0.303 3.697 13 C -0.092 4.092 14 C -0.160 4.160 15 C 0.521 3.479 16 F -0.169 7.169 17 F -0.171 7.171 18 F -0.172 7.172 19 C 0.026 3.974 20 N -0.192 5.192 21 N -0.265 5.265 22 C -0.038 4.038 23 C -0.105 4.105 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.121 4.121 27 C -0.123 4.123 28 H 0.272 0.728 29 H 0.165 0.835 30 H 0.178 0.822 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.278 -3.735 -6.742 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.113 4.113 3 Si 0.694 3.306 4 H -0.160 1.160 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.101 0.899 9 C 0.153 3.847 10 H 0.086 0.914 11 O -0.202 6.202 12 C 0.118 3.882 13 C -0.123 4.123 14 C -0.172 4.172 15 C 0.466 3.534 16 F -0.150 7.150 17 F -0.152 7.152 18 F -0.153 7.153 19 C -0.141 4.141 20 N -0.035 5.035 21 N -0.124 5.124 22 C -0.039 4.039 23 C -0.123 4.123 24 C -0.142 4.142 25 C -0.160 4.160 26 C -0.139 4.139 27 C -0.141 4.141 28 H 0.082 0.918 29 H 0.182 0.818 30 H 0.195 0.805 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.705 -2.559 -5.837 12.459 hybrid contribution 0.472 -0.510 -0.738 1.014 sum 11.177 -3.069 -6.575 13.326 Atomic orbital electron populations 1.69897 1.06652 1.28138 1.45569 1.25068 0.94784 0.99561 0.91902 0.86989 0.79579 0.82627 0.81451 1.15959 1.21677 1.19137 1.21013 0.87628 0.95744 1.52213 0.89899 1.19580 0.95964 0.90764 0.78437 0.91428 1.86382 1.80311 1.40314 1.13176 1.21363 0.88615 0.89792 0.88452 1.21380 0.98838 1.02542 0.89546 1.21001 1.06166 0.96683 0.93383 1.17895 0.74940 0.77056 0.83540 1.93263 1.49241 1.88419 1.84113 1.93209 1.81459 1.68630 1.71919 1.93217 1.71587 1.57599 1.92902 1.23893 0.98831 0.90987 1.00401 1.73008 1.06521 1.29787 0.94144 1.73216 1.14334 1.07381 1.17462 1.19984 0.93755 0.93712 0.96450 1.20949 0.98975 0.95056 0.97346 1.21049 0.99627 0.99073 0.94457 1.20944 1.02306 0.93598 0.99196 1.20962 1.00403 0.95276 0.97256 1.21000 0.98987 0.99772 0.94379 0.91806 0.81787 0.80506 0.86069 0.86796 0.86959 0.86708 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.96 55.43 0.77 -24.59 16 2 C 0.10 2.63 5.47 -17.82 -0.10 2.53 16 3 Si 0.87 20.93 25.88 -169.99 -4.40 16.53 16 4 H -0.24 -5.68 6.83 56.52 0.39 -5.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.02 5.36 56.52 0.30 -5.72 16 7 C -0.53 -14.31 9.17 -34.44 -0.32 -14.62 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 C 0.21 4.75 2.03 -29.04 -0.06 4.70 16 10 H 0.07 1.60 3.63 -51.93 -0.19 1.41 16 11 O -0.30 -6.37 9.02 -18.78 -0.17 -6.54 16 12 C 0.30 5.96 7.53 -16.95 -0.13 5.84 16 13 C -0.09 -1.41 9.52 -39.05 -0.37 -1.78 16 14 C -0.16 -2.20 5.48 -104.28 -0.57 -2.77 16 15 C 0.52 6.04 3.40 36.00 0.12 6.17 16 16 F -0.17 -2.05 17.30 2.25 0.04 -2.01 16 17 F -0.17 -1.85 16.56 2.25 0.04 -1.82 16 18 F -0.17 -1.97 16.59 2.25 0.04 -1.93 16 19 C 0.03 0.37 10.71 -17.36 -0.19 0.19 16 20 N -0.19 -3.62 11.49 30.56 0.35 -3.27 16 21 N -0.27 -5.65 8.48 30.50 0.26 -5.39 16 22 C -0.04 -0.81 4.96 -104.63 -0.52 -1.33 16 23 C -0.11 -1.99 9.36 -39.58 -0.37 -2.36 16 24 C -0.12 -1.99 10.05 -39.59 -0.40 -2.39 16 25 C -0.14 -2.17 10.05 -39.58 -0.40 -2.57 16 26 C -0.12 -1.98 10.05 -39.58 -0.40 -2.38 16 27 C -0.12 -2.39 9.67 -39.58 -0.38 -2.78 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.16 2.06 7.74 -52.49 -0.41 1.66 16 30 H 0.18 1.90 7.69 -52.49 -0.40 1.50 16 31 H 0.12 2.24 7.73 -52.48 -0.41 1.83 16 32 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.31 6.61 -52.49 -0.35 1.96 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -29.69 319.97 -5.01 -34.70 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.69 Total: 3.07 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -4.07 Total: -13.57 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 1.38 Total: -33.26 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.17 Total: -6.54 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.11 Total: -5.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.40 Total: 16.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.69 -5.01 -34.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229746596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.945 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds