Wall clock time and date at job start Tue Mar 31 2020 14:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99947 * 2 1 4 4 H 1.48499 * 109.46989 * 265.68322 * 3 2 1 5 5 H 1.48498 * 109.47382 * 25.68164 * 3 2 1 6 6 H 1.48500 * 109.47512 * 145.68277 * 3 2 1 7 7 C 1.37879 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99424 * 353.64217 * 7 2 1 9 9 C 1.50700 * 120.00154 * 173.64827 * 7 2 1 10 10 H 1.09002 * 109.46528 * 355.98086 * 9 7 2 11 11 O 1.42893 * 109.46913 * 235.98271 * 9 7 2 12 12 C 1.35694 * 117.00146 * 89.99799 * 11 9 7 13 13 C 1.39273 * 120.14137 * 180.02562 * 12 11 9 14 14 C 1.38635 * 117.92230 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.98934 * 180.02562 * 14 13 12 16 16 F 1.39911 * 109.46961 * 90.00066 * 15 14 13 17 17 F 1.39897 * 109.46954 * 209.99533 * 15 14 13 18 18 F 1.39895 * 109.47468 * 330.00173 * 15 14 13 19 19 C 1.38765 * 118.01942 * 359.97438 * 14 13 12 20 20 N 1.31819 * 119.97229 * 0.02562 * 19 14 13 21 21 N 1.28347 * 122.26181 * 359.73205 * 20 19 14 22 22 C 1.50698 * 109.47132 * 115.98054 * 9 7 2 23 23 C 1.38230 * 119.99987 * 81.73738 * 22 9 7 24 24 C 1.38237 * 120.00083 * 180.02562 * 23 22 9 25 25 C 1.38227 * 120.00210 * 0.06765 * 24 23 22 26 26 C 1.38240 * 119.99897 * 359.97438 * 25 24 23 27 27 C 1.38233 * 119.99978 * 261.86811 * 22 9 7 28 28 H 0.97004 * 119.99938 * 359.97438 * 1 2 3 29 29 H 1.08002 * 121.03620 * 359.95756 * 13 12 11 30 30 H 1.07997 * 120.01100 * 179.97438 * 19 14 13 31 31 H 1.08005 * 119.99750 * 0.10665 * 23 22 9 32 32 H 1.08004 * 119.99854 * 180.34760 * 24 23 22 33 33 H 1.08001 * 120.00462 * 179.97438 * 25 24 23 34 34 H 1.07998 * 120.00017 * 179.97438 * 26 25 24 35 35 H 1.07995 * 120.00132 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5879 1.9937 -1.3961 5 1 1.4040 2.6773 0.6067 6 1 3.4981 1.4683 0.7893 7 6 2.0046 -1.1941 0.0005 8 1 1.4695 -2.1264 0.1045 9 6 3.5046 -1.1982 -0.1438 10 1 3.8566 -0.1796 -0.3074 11 8 3.8737 -2.0142 -1.2572 12 6 3.9653 -1.4032 -2.4654 13 6 4.3197 -2.1368 -3.5950 14 6 4.3991 -1.4664 -4.8058 15 6 4.7758 -2.1925 -6.0715 16 9 3.6199 -2.6792 -6.6916 17 9 5.4332 -1.3113 -6.9366 18 9 5.6237 -3.2611 -5.7614 19 6 4.1202 -0.1071 -4.8179 20 7 3.7922 0.5078 -3.6990 21 7 3.7129 -0.1089 -2.5762 22 6 4.1287 -1.7497 1.1121 23 6 4.2115 -3.1167 1.2999 24 6 4.7835 -3.6227 2.4522 25 6 5.2713 -2.7617 3.4173 26 6 5.1877 -1.3946 3.2299 27 6 4.6158 -0.8887 2.0775 28 1 -0.4850 0.8401 0.0004 29 1 4.5266 -3.1948 -3.5295 30 1 4.1727 0.4468 -5.7435 31 1 3.8306 -3.7894 0.5457 32 1 4.8533 -4.6908 2.5963 33 1 5.7178 -3.1570 4.3177 34 1 5.5684 -0.7219 3.9841 35 1 4.5495 0.1793 1.9316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229746596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:12 Heat of formation + Delta-G solvation = -113.613365 kcal Electronic energy + Delta-G solvation = -26875.415125 eV Core-core repulsion = 22424.161309 eV Total energy + Delta-G solvation = -4451.253816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.33382 -48.82566 -48.79136 -42.43366 -40.42226 -39.03263 -35.31605 -35.05901 -33.48048 -32.23218 -31.68059 -29.34617 -28.24026 -25.81147 -25.30109 -23.95074 -23.35292 -22.00137 -20.09865 -19.97469 -19.66260 -19.40179 -18.75993 -18.07243 -17.83610 -17.30879 -16.99060 -16.36021 -16.02761 -15.64469 -15.61621 -15.54632 -15.21591 -15.01143 -14.91708 -14.87486 -14.83106 -14.62800 -14.59009 -14.23673 -13.83567 -13.62390 -13.40248 -12.99513 -12.80964 -12.38196 -12.11195 -11.89197 -11.80199 -11.72116 -11.47854 -10.91131 -10.77224 -10.17185 -9.74443 -9.51432 -8.50392 -6.62170 -0.81563 -0.18229 0.52141 0.58225 1.22724 1.28206 1.37676 1.49644 1.88988 2.21111 2.27351 2.41897 2.75677 2.87078 3.02119 3.04235 3.18687 3.22277 3.42632 3.81554 4.05551 4.10193 4.22699 4.28080 4.35645 4.41235 4.56254 4.70092 4.79163 4.84262 5.12654 5.23433 5.24631 5.64228 5.66756 5.77392 5.89921 6.18708 6.25675 6.50248 7.10818 7.45806 8.63336 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.004490 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.728427 B = 6233.977501 C = 7510.551886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.050 3.950 3 Si 0.919 3.081 4 H -0.238 1.238 5 H -0.289 1.289 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.039 0.961 9 C 0.219 3.781 10 H 0.059 0.941 11 O -0.306 6.306 12 C 0.273 3.727 13 C -0.079 4.079 14 C -0.152 4.152 15 C 0.537 3.463 16 F -0.168 7.168 17 F -0.161 7.161 18 F -0.166 7.166 19 C 0.046 3.954 20 N -0.229 5.229 21 N -0.306 5.306 22 C -0.074 4.074 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.118 4.118 27 C -0.144 4.144 28 H 0.273 0.727 29 H 0.192 0.808 30 H 0.219 0.781 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.076 -4.499 -6.921 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.153 4.153 3 Si 0.743 3.257 4 H -0.161 1.161 5 H -0.216 1.216 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.057 0.943 9 C 0.165 3.835 10 H 0.077 0.923 11 O -0.209 6.209 12 C 0.086 3.914 13 C -0.109 4.109 14 C -0.164 4.164 15 C 0.482 3.518 16 F -0.150 7.150 17 F -0.142 7.142 18 F -0.148 7.148 19 C -0.121 4.121 20 N -0.069 5.069 21 N -0.163 5.163 22 C -0.075 4.075 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.136 4.136 27 C -0.162 4.162 28 H 0.082 0.918 29 H 0.209 0.791 30 H 0.235 0.765 31 H 0.131 0.869 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.524 -3.313 -6.022 15.171 hybrid contribution -0.270 -0.433 -0.821 0.967 sum 13.254 -3.746 -6.843 15.380 Atomic orbital electron populations 1.70012 1.08183 1.28796 1.48778 1.25747 0.95270 1.02568 0.91713 0.86178 0.79142 0.78912 0.81516 1.16137 1.21559 1.17165 1.21095 0.90089 0.93854 1.51861 0.94284 1.19248 0.93459 0.90960 0.79838 0.92283 1.86270 1.81247 1.39685 1.13712 1.21672 0.90593 0.90318 0.88801 1.21623 0.97075 1.03624 0.88627 1.21204 1.04739 0.96533 0.93908 1.17416 0.74978 0.76942 0.82469 1.93279 1.49389 1.88372 1.83915 1.93241 1.81205 1.68356 1.71370 1.93239 1.71374 1.57296 1.92861 1.24539 0.95547 0.91617 1.00445 1.72919 1.08697 1.30582 0.94747 1.73060 1.15634 1.08362 1.19245 1.19994 0.96318 0.95126 0.96055 1.21031 0.99988 0.94187 0.98771 1.21443 0.98002 1.01139 0.93166 1.21468 1.00352 0.92927 0.99989 1.21367 0.99001 0.96673 0.96529 1.21119 1.00244 0.99294 0.95541 0.91826 0.79100 0.76471 0.86895 0.83425 0.82637 0.83371 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.89 13.96 21.45 0.30 -56.59 16 2 C 0.05 2.89 5.47 84.65 0.46 3.35 16 3 Si 0.92 45.03 25.88 68.60 1.78 46.80 16 4 H -0.24 -11.62 6.83 99.48 0.68 -10.94 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.25 -11.19 5.36 99.48 0.53 -10.65 16 7 C -0.53 -30.53 9.17 25.60 0.23 -30.29 16 8 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 9 C 0.22 10.57 2.03 29.10 0.06 10.63 16 10 H 0.06 2.91 3.63 -2.39 -0.01 2.90 16 11 O -0.31 -13.55 9.02 -90.13 -0.81 -14.36 16 12 C 0.27 10.93 7.53 84.87 0.64 11.57 16 13 C -0.08 -2.34 9.52 22.61 0.22 -2.12 16 14 C -0.15 -3.82 5.48 -19.64 -0.11 -3.93 16 15 C 0.54 10.75 3.40 71.23 0.24 10.99 16 16 F -0.17 -3.57 17.30 44.97 0.78 -2.80 16 17 F -0.16 -2.89 16.56 44.97 0.74 -2.15 16 18 F -0.17 -3.28 16.59 44.97 0.75 -2.53 16 19 C 0.05 1.25 10.71 84.82 0.91 2.16 16 20 N -0.23 -8.58 11.49 -57.22 -0.66 -9.23 16 21 N -0.31 -13.32 8.48 -170.22 -1.44 -14.76 16 22 C -0.07 -3.20 4.96 -19.87 -0.10 -3.30 16 23 C -0.12 -4.61 9.36 22.27 0.21 -4.40 16 24 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 25 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 26 C -0.12 -3.53 10.05 22.27 0.22 -3.30 16 27 C -0.14 -5.53 9.67 22.27 0.22 -5.32 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.19 4.45 7.74 -2.91 -0.02 4.43 16 30 H 0.22 3.90 7.69 -2.91 -0.02 3.88 16 31 H 0.11 4.32 7.73 -2.91 -0.02 4.30 16 32 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.11 4.30 6.61 -2.91 -0.02 4.28 16 Total: -1.00 -70.17 319.97 6.04 -64.13 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.96 Total: 11.98 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 3.65 Total: -20.50 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.80 Total: -80.58 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.81 Total: -14.36 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 2.27 Total: -7.48 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.78 Total: 46.80 kcal Total: -70.17 6.04 -64.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229746596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.486 kcal (2) G-P(sol) polarization free energy of solvation -70.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds