Wall clock time and date at job start Tue Mar 31 2020 13:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47448 * 269.99901 * 3 2 1 5 5 H 1.48501 * 109.47143 * 30.00029 * 3 2 1 6 6 H 1.48501 * 109.47479 * 149.99925 * 3 2 1 7 7 C 1.40344 * 120.00558 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00488 * 180.02562 * 7 2 1 9 9 C 1.41768 * 119.99340 * 359.97438 * 7 2 1 10 10 O 1.21812 * 120.00033 * 0.02562 * 9 7 2 11 11 C 1.47576 * 119.99890 * 179.97438 * 9 7 2 12 12 C 1.39948 * 120.09444 * 180.02562 * 11 9 7 13 13 C 1.37114 * 119.90227 * 180.02562 * 12 11 9 14 14 C 1.39158 * 120.09959 * 359.97438 * 13 12 11 15 15 O 1.35658 * 119.91050 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00381 * 185.40033 * 15 14 13 17 17 C 1.52779 * 109.17326 * 275.97948 * 16 15 14 18 18 C 1.53038 * 109.88368 * 169.78933 * 17 16 15 19 19 S 1.81665 * 109.07970 * 63.59274 * 18 17 16 20 20 O 1.42103 * 108.66193 * 59.97834 * 19 18 17 21 21 O 1.42094 * 108.66565 * 191.22775 * 19 18 17 22 22 C 1.81677 * 101.30632 * 305.65311 * 19 18 17 23 23 C 1.52585 * 109.24417 * 154.79878 * 16 15 14 24 24 C 1.39165 * 120.18462 * 0.26009 * 14 13 12 25 25 C 1.37118 * 120.09651 * 359.48076 * 24 14 13 26 26 H 0.97003 * 119.99966 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.04585 * 0.02562 * 12 11 9 28 28 H 1.08001 * 119.94769 * 179.97438 * 13 12 11 29 29 H 1.09003 * 109.23754 * 35.34982 * 16 15 14 30 30 H 1.09006 * 109.52491 * 49.60758 * 17 16 15 31 31 H 1.09002 * 109.35450 * 289.86330 * 17 16 15 32 32 H 1.09001 * 109.55120 * 303.68322 * 18 17 16 33 33 H 1.09005 * 109.54624 * 183.49840 * 18 17 16 34 34 H 1.08993 * 109.55001 * 174.15008 * 22 19 18 35 35 H 1.08995 * 109.54910 * 294.34914 * 22 19 18 36 36 H 1.08993 * 109.38647 * 70.09009 * 23 16 15 37 37 H 1.09002 * 109.29567 * 310.34543 * 23 16 15 38 38 H 1.08001 * 119.95049 * 179.72286 * 24 14 13 39 39 H 1.08002 * 120.04979 * 180.25127 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4868 2.0465 -1.4001 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4402 0.7000 7 6 2.0071 -1.2153 0.0005 8 1 3.0870 -1.2153 0.0010 9 6 1.2982 -2.4431 0.0016 10 8 0.0801 -2.4431 0.0016 11 6 2.0361 -3.7211 0.0016 12 6 1.3384 -4.9343 0.0022 13 6 2.0279 -6.1194 0.0027 14 6 3.4195 -6.1171 0.0022 15 8 4.0979 -7.2919 0.0032 16 6 5.5200 -7.2199 0.1224 17 6 6.1277 -6.9786 -1.2584 18 6 7.6154 -6.6467 -1.1216 19 16 8.4818 -8.0809 -0.4199 20 8 8.3073 -9.1890 -1.2922 21 8 9.7962 -7.6840 -0.0542 22 6 7.5184 -8.3742 1.0923 23 6 6.0413 -8.5231 0.7208 24 6 4.1173 -4.9131 0.0066 25 6 3.4356 -3.7233 0.0007 26 1 -0.4850 0.8401 -0.0004 27 1 0.2584 -4.9369 0.0022 28 1 1.4902 -7.0560 0.0035 29 1 5.7838 -6.3916 0.7802 30 1 5.6145 -6.1475 -1.7421 31 1 6.0117 -7.8762 -1.8660 32 1 7.7383 -5.7876 -0.4620 33 1 8.0291 -6.4149 -2.1031 34 1 7.8668 -9.2870 1.5754 35 1 7.6418 -7.5315 1.7724 36 1 5.9307 -9.3257 -0.0083 37 1 5.4660 -8.7644 1.6147 38 1 5.1973 -4.9157 0.0106 39 1 3.9779 -2.7893 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233519609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:29 Heat of formation + Delta-G solvation = -125.627060 kcal Electronic energy + Delta-G solvation = -24677.538287 eV Core-core repulsion = 20870.771458 eV Total energy + Delta-G solvation = -3806.766828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37203 -38.15090 -37.40337 -36.42801 -36.30454 -35.26242 -32.76246 -32.41689 -30.76517 -29.61413 -27.63301 -26.49276 -24.21757 -22.87651 -22.41660 -21.04866 -19.67254 -19.28089 -18.16146 -17.41607 -16.81627 -16.71490 -16.16300 -15.96540 -15.57191 -15.32361 -14.59294 -14.29771 -14.18494 -13.91931 -13.77797 -13.44182 -13.13987 -13.11145 -12.80059 -12.55789 -12.50849 -12.46192 -12.37786 -12.26976 -11.84785 -11.63641 -11.38157 -11.30890 -11.19516 -11.08216 -10.67070 -10.65289 -10.41825 -10.35786 -10.02914 -9.04570 -8.57482 -7.59927 -7.55761 -6.37677 -4.98344 -0.42572 1.70759 1.89976 2.21250 2.87103 2.99342 3.07479 3.10209 3.22671 3.65226 3.90514 3.94047 3.99333 4.02420 4.15788 4.41076 4.44849 4.56645 4.63545 4.67187 4.99854 5.10417 5.18630 5.25391 5.29721 5.37629 5.53391 5.66886 5.73581 5.79520 5.96777 6.03405 6.18990 6.51814 6.70530 6.94531 7.16839 7.20562 7.27184 7.68095 7.94852 8.71692 8.76284 10.23869 10.45756 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.002754 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.427321 B =10164.782521 C =11211.086801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.517 4.517 8 H 0.073 0.927 9 C 0.388 3.612 10 O -0.543 6.543 11 C -0.133 4.133 12 C -0.056 4.056 13 C -0.158 4.158 14 C 0.106 3.894 15 O -0.304 6.304 16 C 0.070 3.930 17 C -0.141 4.141 18 C -0.600 4.600 19 S 2.415 3.585 20 O -0.933 6.933 21 O -0.942 6.942 22 C -0.601 4.601 23 C -0.108 4.108 24 C -0.222 4.222 25 C -0.057 4.057 26 H 0.275 0.725 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.067 -13.403 1.057 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.548 4.548 8 H 0.091 0.909 9 C 0.284 3.716 10 O -0.433 6.433 11 C -0.134 4.134 12 C -0.074 4.074 13 C -0.177 4.177 14 C 0.062 3.938 15 O -0.218 6.218 16 C 0.013 3.987 17 C -0.180 4.180 18 C -0.730 4.730 19 S 2.597 3.403 20 O -0.931 6.931 21 O -0.939 6.939 22 C -0.730 4.730 23 C -0.146 4.146 24 C -0.241 4.241 25 C -0.076 4.076 26 H 0.086 0.914 27 H 0.151 0.849 28 H 0.141 0.859 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.981 -14.013 0.723 20.526 hybrid contribution 0.186 1.477 0.345 1.528 sum 15.167 -12.535 1.068 19.706 Atomic orbital electron populations 1.69951 1.07561 1.28187 1.30548 1.26008 0.94652 1.01037 0.92741 0.86377 0.80439 0.80937 0.79231 1.19356 1.20101 1.18530 1.20926 0.94865 0.91669 1.47374 0.90850 1.18071 0.88462 0.85826 0.79278 1.90507 1.15031 1.88492 1.49238 1.21870 0.94075 0.97915 0.99550 1.21134 1.00589 0.90735 0.94991 1.20195 0.90456 0.98910 1.08138 1.19112 0.91642 0.83899 0.99161 1.86004 1.18020 1.29149 1.88602 1.22459 0.80988 0.99024 0.96266 1.21942 0.91455 1.05886 0.98691 1.30196 1.07989 1.20300 1.14474 1.08178 0.76368 0.77634 0.78147 1.93601 1.86768 1.49411 1.63277 1.93607 1.33452 1.83428 1.83396 1.30193 1.08568 1.12761 1.21435 1.21231 0.91661 0.97544 1.04140 1.21045 0.99362 0.92508 1.11191 1.21252 0.94208 0.97121 0.94995 0.91412 0.84934 0.85910 0.89732 0.88004 0.88550 0.84545 0.84041 0.83970 0.84466 0.88562 0.88138 0.86183 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.68 11.73 55.57 0.65 -20.03 16 2 C 0.08 2.07 5.50 -17.32 -0.10 1.98 16 3 Si 0.91 18.65 29.56 -169.99 -5.03 13.63 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.52 -13.74 8.86 -37.44 -0.33 -14.07 16 8 H 0.07 1.74 6.01 -52.49 -0.32 1.43 16 9 C 0.39 10.65 6.91 -34.43 -0.24 10.41 16 10 O -0.54 -16.89 14.89 5.09 0.08 -16.81 16 11 C -0.13 -2.98 5.89 -104.81 -0.62 -3.59 16 12 C -0.06 -1.13 9.57 -39.35 -0.38 -1.51 16 13 C -0.16 -2.67 9.95 -39.65 -0.39 -3.06 16 14 C 0.11 1.63 6.54 -38.90 -0.25 1.38 16 15 O -0.30 -3.87 9.76 -18.68 -0.18 -4.05 16 16 C 0.07 0.62 1.90 -27.06 -0.05 0.57 16 17 C -0.14 -1.14 4.86 -26.82 -0.13 -1.27 16 18 C -0.60 -3.54 6.34 37.18 0.24 -3.31 16 19 S 2.42 17.21 5.31 -107.50 -0.57 16.64 16 20 O -0.93 -9.85 17.94 -57.82 -1.04 -10.89 16 21 O -0.94 -9.96 18.10 -57.82 -1.05 -11.00 16 22 C -0.60 -2.94 6.35 37.18 0.24 -2.70 16 23 C -0.11 -0.72 5.37 -26.92 -0.14 -0.87 16 24 C -0.22 -3.39 8.11 -39.64 -0.32 -3.71 16 25 C -0.06 -1.08 9.41 -39.35 -0.37 -1.45 16 26 H 0.27 6.93 8.29 -40.82 -0.34 6.59 16 27 H 0.13 2.74 7.65 -52.49 -0.40 2.33 16 28 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.08 0.67 6.24 -51.93 -0.32 0.34 16 30 H 0.10 0.93 6.95 -51.93 -0.36 0.57 16 31 H 0.10 0.74 8.02 -51.93 -0.42 0.33 16 32 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.14 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.62 8.02 -51.93 -0.42 0.21 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.12 1.39 5.51 -52.49 -0.29 1.11 16 39 H 0.13 2.36 6.19 -52.49 -0.33 2.04 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -37.21 335.81 -9.45 -46.65 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.52 Total: 2.01 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.85 Total: -21.20 kcal Atomic # 7 Polarization: -20.68 SS G_CDS: 0.65 Total: -20.03 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -2.19 Total: -42.76 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: 17.21 SS G_CDS: -0.57 Total: 16.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.21 -9.45 -46.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233519609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.974 kcal (2) G-P(sol) polarization free energy of solvation -37.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds