Wall clock time and date at job start Tue Mar 31 2020 13:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30550 * 1 3 3 Si 1.86795 * 119.99632 * 2 1 4 4 H 1.48505 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47074 * 299.99112 * 3 2 1 6 6 H 1.48500 * 109.47668 * 59.99254 * 3 2 1 7 7 C 1.40315 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.41834 * 119.99841 * 0.28790 * 7 2 1 10 10 O 1.21809 * 120.00306 * 359.71438 * 9 7 2 11 11 C 1.47536 * 119.99754 * 179.72415 * 9 7 2 12 12 C 1.39845 * 120.20798 * 359.97438 * 11 9 7 13 13 C 1.37704 * 119.90376 * 179.97438 * 12 11 9 14 14 C 1.38686 * 120.32053 * 359.97438 * 13 12 11 15 15 C 1.38097 * 120.41396 * 0.02762 * 14 13 12 16 16 C 1.38665 * 120.09492 * 359.69373 * 15 14 13 17 17 O 1.35635 * 120.16390 * 180.29899 * 16 15 14 18 18 C 1.42903 * 116.99834 * 5.56706 * 17 16 15 19 19 C 1.52591 * 109.23917 * 275.60128 * 18 17 16 20 20 C 1.53043 * 109.98372 * 169.71394 * 19 18 17 21 21 S 1.81673 * 108.99668 * 63.64638 * 20 19 18 22 22 O 1.42106 * 108.65835 * 191.37451 * 21 20 19 23 23 O 1.42094 * 108.74668 * 60.06368 * 21 20 19 24 24 C 1.81669 * 101.30902 * 305.70226 * 21 20 19 25 25 C 1.52585 * 109.24275 * 154.44746 * 18 17 16 26 26 H 0.97001 * 119.99982 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.04670 * 359.96555 * 12 11 9 28 28 H 1.07995 * 119.83848 * 179.97438 * 13 12 11 29 29 H 1.07997 * 119.79341 * 179.97438 * 14 13 12 30 30 H 1.08000 * 119.95037 * 179.97438 * 15 14 13 31 31 H 1.08996 * 109.23802 * 35.00367 * 18 17 16 32 32 H 1.08993 * 109.38247 * 289.87086 * 19 18 17 33 33 H 1.08996 * 109.38796 * 49.55792 * 19 18 17 34 34 H 1.09001 * 109.54974 * 303.79221 * 20 19 18 35 35 H 1.08991 * 109.62539 * 183.55285 * 20 19 18 36 36 H 1.09006 * 109.54786 * 294.44448 * 24 21 20 37 37 H 1.09000 * 109.62756 * 174.20764 * 24 21 20 38 38 H 1.08999 * 109.38286 * 310.44045 * 25 18 17 39 39 H 1.08995 * 109.38808 * 70.23187 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 3.6994 1.3465 0.0006 5 1 1.8807 2.3963 -1.2126 6 1 1.8805 2.3966 1.2124 7 6 2.0071 -1.2151 0.0005 8 1 3.0871 -1.2151 0.0001 9 6 1.2979 -2.4435 -0.0051 10 8 0.0798 -2.4435 -0.0051 11 6 2.0357 -3.7211 -0.0107 12 6 3.4341 -3.7261 -0.0110 13 6 4.1164 -4.9223 -0.0157 14 6 3.4233 -6.1235 -0.0195 15 6 2.0424 -6.1340 -0.0193 16 6 1.3380 -4.9396 -0.0088 17 8 -0.0183 -4.9483 -0.0025 18 6 -0.6583 -6.2204 0.1164 19 6 -0.7637 -6.8612 -1.2644 20 6 -1.2084 -8.3196 -1.1316 21 16 -2.8768 -8.3661 -0.4142 22 8 -3.1776 -9.7061 -0.0493 23 8 -3.7635 -7.6637 -1.2742 24 6 -2.6408 -7.3903 1.0999 25 6 -2.0431 -6.0313 0.7288 26 1 -0.4850 0.8401 -0.0004 27 1 3.9782 -2.7932 -0.0077 28 1 5.1963 -4.9249 -0.0163 29 1 3.9670 -7.0567 -0.0236 30 1 1.5103 -7.0738 -0.0228 31 1 -0.0631 -6.8626 0.7654 32 1 -1.4920 -6.3139 -1.8626 33 1 0.2083 -6.8228 -1.7562 34 1 -0.5165 -8.8541 -0.4808 35 1 -1.2209 -8.7895 -2.1150 36 1 -1.9617 -7.9166 1.7708 37 1 -3.6011 -7.2437 1.5944 38 1 -1.9616 -5.4152 1.6242 39 1 -2.6933 -5.5368 0.0073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:32 Heat of formation + Delta-G solvation = -120.257836 kcal Electronic energy + Delta-G solvation = -25490.947047 eV Core-core repulsion = 21684.413046 eV Total energy + Delta-G solvation = -3806.534001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.08574 -37.87886 -37.13878 -36.21050 -36.06061 -35.24669 -32.63727 -32.14974 -30.63641 -29.39516 -27.26602 -26.51467 -23.93568 -22.95891 -22.19717 -20.64038 -19.81067 -19.00967 -17.76528 -17.19591 -16.59535 -16.53169 -15.93512 -15.69720 -15.37154 -15.06069 -14.57851 -14.35982 -13.95538 -13.69476 -13.61081 -13.33348 -13.12734 -12.79876 -12.72010 -12.33426 -12.23708 -12.19652 -12.06290 -11.96761 -11.52545 -11.44241 -11.32266 -11.11942 -10.99107 -10.87748 -10.66284 -10.47994 -10.30350 -10.16529 -10.11317 -8.98287 -8.29884 -7.56152 -7.39696 -6.27048 -4.87342 -0.20381 1.71208 1.95547 2.42769 3.03641 3.13055 3.16878 3.25001 3.43941 3.90651 4.00404 4.00981 4.26161 4.30225 4.42175 4.60832 4.70242 4.72070 4.92199 4.94214 5.21688 5.25061 5.29139 5.36487 5.55770 5.61843 5.69608 5.82186 5.82906 5.95629 6.04296 6.11267 6.25171 6.59732 6.80943 6.85441 7.08133 7.26181 7.38171 7.98097 8.04112 8.81492 8.85275 10.34352 10.57144 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.003619 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.315019 B = 7735.031511 C = 8990.033903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.072 0.928 9 C 0.389 3.611 10 O -0.518 6.518 11 C -0.132 4.132 12 C -0.058 4.058 13 C -0.173 4.173 14 C -0.093 4.093 15 C -0.231 4.231 16 C 0.145 3.855 17 O -0.253 6.253 18 C 0.064 3.936 19 C -0.141 4.141 20 C -0.599 4.599 21 S 2.414 3.586 22 O -0.947 6.947 23 O -0.931 6.931 24 C -0.596 4.596 25 C -0.108 4.108 26 H 0.273 0.727 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.103 0.897 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 -14.153 1.034 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.091 0.909 9 C 0.283 3.717 10 O -0.405 6.405 11 C -0.134 4.134 12 C -0.077 4.077 13 C -0.191 4.191 14 C -0.112 4.112 15 C -0.250 4.250 16 C 0.099 3.901 17 O -0.164 6.164 18 C 0.006 3.994 19 C -0.179 4.179 20 C -0.728 4.728 21 S 2.596 3.404 22 O -0.944 6.944 23 O -0.928 6.928 24 C -0.726 4.726 25 C -0.146 4.146 26 H 0.084 0.916 27 H 0.153 0.847 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.122 0.878 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.287 -14.366 0.698 14.386 hybrid contribution 1.572 0.725 0.333 1.763 sum 1.284 -13.642 1.031 13.741 Atomic orbital electron populations 1.69975 1.07436 1.27853 1.31235 1.25957 0.94615 1.00845 0.92818 0.86361 0.80800 0.81521 0.78494 1.18447 1.19895 1.19916 1.20935 0.94801 0.91613 1.47864 0.90949 1.17997 0.88657 0.85314 0.79774 1.90549 1.14504 1.88052 1.47438 1.21599 0.93868 0.95659 1.02285 1.21437 0.93025 0.98081 0.95120 1.20977 0.99375 0.92666 1.06091 1.20816 0.93291 0.97639 0.99432 1.21107 0.95408 0.96488 1.11979 1.19408 0.82303 0.93480 0.94912 1.86550 1.16081 1.27064 1.86718 1.22428 0.94613 0.86758 0.95571 1.21919 1.06031 0.90785 0.99191 1.30174 1.23485 1.04957 1.14158 1.08190 0.78135 0.75758 0.78344 1.93587 1.83000 1.34277 1.83531 1.93610 1.60467 1.74770 1.63973 1.30180 1.11249 1.10236 1.20917 1.21211 0.94516 0.94213 1.04639 0.91641 0.84668 0.86689 0.86861 0.86232 0.90564 0.88300 0.88516 0.84915 0.84330 0.84814 0.84028 0.87823 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.93 11.73 55.56 0.65 -20.28 16 2 C 0.08 2.13 5.50 -17.32 -0.10 2.04 16 3 Si 0.90 19.00 29.56 -169.99 -5.02 13.98 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.52 -14.04 8.86 -37.43 -0.33 -14.37 16 8 H 0.07 1.76 6.02 -52.49 -0.32 1.45 16 9 C 0.39 10.81 6.91 -34.42 -0.24 10.57 16 10 O -0.52 -16.07 13.71 -16.74 -0.23 -16.30 16 11 C -0.13 -3.03 5.90 -104.69 -0.62 -3.65 16 12 C -0.06 -1.12 9.43 -39.18 -0.37 -1.49 16 13 C -0.17 -2.72 10.02 -39.61 -0.40 -3.12 16 14 C -0.09 -1.37 10.04 -39.47 -0.40 -1.77 16 15 C -0.23 -3.65 8.16 -39.48 -0.32 -3.97 16 16 C 0.15 2.92 6.55 -38.61 -0.25 2.67 16 17 O -0.25 -5.09 7.86 -40.44 -0.32 -5.41 16 18 C 0.06 0.87 1.90 -27.15 -0.05 0.82 16 19 C -0.14 -1.64 4.86 -26.92 -0.13 -1.77 16 20 C -0.60 -4.88 6.35 37.18 0.24 -4.64 16 21 S 2.41 23.74 5.30 -107.50 -0.57 23.17 16 22 O -0.95 -11.82 18.10 -57.82 -1.05 -12.86 16 23 O -0.93 -12.77 17.95 -57.82 -1.04 -13.80 16 24 C -0.60 -5.05 6.35 37.18 0.24 -4.81 16 25 C -0.11 -1.32 5.37 -26.93 -0.14 -1.46 16 26 H 0.27 6.95 8.29 -40.82 -0.34 6.62 16 27 H 0.14 2.51 6.20 -52.49 -0.33 2.18 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.48 5.53 -52.49 -0.29 1.19 16 31 H 0.08 0.85 6.25 -51.93 -0.32 0.53 16 32 H 0.10 1.23 8.02 -51.93 -0.42 0.81 16 33 H 0.10 1.16 6.96 -51.93 -0.36 0.80 16 34 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.13 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.10 1.29 8.01 -51.93 -0.42 0.88 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -37.80 333.84 -9.96 -47.76 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.54 Total: 3.65 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -2.87 Total: -24.95 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.65 Total: -20.28 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -2.63 Total: -48.37 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 16 Polarization: 23.74 SS G_CDS: -0.57 Total: 23.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.80 -9.96 -47.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.498 kcal (2) G-P(sol) polarization free energy of solvation -37.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds