Wall clock time and date at job start Tue Mar 31 2020 13:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30550 * 1 3 3 Si 1.86795 * 119.99632 * 2 1 4 4 H 1.48505 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47074 * 299.99112 * 3 2 1 6 6 H 1.48500 * 109.47668 * 59.99254 * 3 2 1 7 7 C 1.40315 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.41834 * 119.99841 * 0.28790 * 7 2 1 10 10 O 1.21809 * 120.00306 * 359.71438 * 9 7 2 11 11 C 1.47536 * 119.99754 * 179.72415 * 9 7 2 12 12 C 1.39845 * 120.20798 * 359.97438 * 11 9 7 13 13 C 1.37704 * 119.90376 * 179.97438 * 12 11 9 14 14 C 1.38686 * 120.32053 * 359.97438 * 13 12 11 15 15 C 1.38097 * 120.41396 * 0.02762 * 14 13 12 16 16 C 1.38665 * 120.09492 * 359.69373 * 15 14 13 17 17 O 1.35635 * 120.16390 * 180.29899 * 16 15 14 18 18 C 1.42903 * 116.99834 * 5.56706 * 17 16 15 19 19 C 1.52591 * 109.23917 * 275.60128 * 18 17 16 20 20 C 1.53043 * 109.98372 * 169.71394 * 19 18 17 21 21 S 1.81673 * 108.99668 * 63.64638 * 20 19 18 22 22 O 1.42106 * 108.65835 * 191.37451 * 21 20 19 23 23 O 1.42094 * 108.74668 * 60.06368 * 21 20 19 24 24 C 1.81669 * 101.30902 * 305.70226 * 21 20 19 25 25 C 1.52585 * 109.24275 * 154.44746 * 18 17 16 26 26 H 0.97001 * 119.99982 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.04670 * 359.96555 * 12 11 9 28 28 H 1.07995 * 119.83848 * 179.97438 * 13 12 11 29 29 H 1.07997 * 119.79341 * 179.97438 * 14 13 12 30 30 H 1.08000 * 119.95037 * 179.97438 * 15 14 13 31 31 H 1.08996 * 109.23802 * 35.00367 * 18 17 16 32 32 H 1.08993 * 109.38247 * 289.87086 * 19 18 17 33 33 H 1.08996 * 109.38796 * 49.55792 * 19 18 17 34 34 H 1.09001 * 109.54974 * 303.79221 * 20 19 18 35 35 H 1.08991 * 109.62539 * 183.55285 * 20 19 18 36 36 H 1.09006 * 109.54786 * 294.44448 * 24 21 20 37 37 H 1.09000 * 109.62756 * 174.20764 * 24 21 20 38 38 H 1.08999 * 109.38286 * 310.44045 * 25 18 17 39 39 H 1.08995 * 109.38808 * 70.23187 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 3.6994 1.3465 0.0006 5 1 1.8807 2.3963 -1.2126 6 1 1.8805 2.3966 1.2124 7 6 2.0071 -1.2151 0.0005 8 1 3.0871 -1.2151 0.0001 9 6 1.2979 -2.4435 -0.0051 10 8 0.0798 -2.4435 -0.0051 11 6 2.0357 -3.7211 -0.0107 12 6 3.4341 -3.7261 -0.0110 13 6 4.1164 -4.9223 -0.0157 14 6 3.4233 -6.1235 -0.0195 15 6 2.0424 -6.1340 -0.0193 16 6 1.3380 -4.9396 -0.0088 17 8 -0.0183 -4.9483 -0.0025 18 6 -0.6583 -6.2204 0.1164 19 6 -0.7637 -6.8612 -1.2644 20 6 -1.2084 -8.3196 -1.1316 21 16 -2.8768 -8.3661 -0.4142 22 8 -3.1776 -9.7061 -0.0493 23 8 -3.7635 -7.6637 -1.2742 24 6 -2.6408 -7.3903 1.0999 25 6 -2.0431 -6.0313 0.7288 26 1 -0.4850 0.8401 -0.0004 27 1 3.9782 -2.7932 -0.0077 28 1 5.1963 -4.9249 -0.0163 29 1 3.9670 -7.0567 -0.0236 30 1 1.5103 -7.0738 -0.0228 31 1 -0.0631 -6.8626 0.7654 32 1 -1.4920 -6.3139 -1.8626 33 1 0.2083 -6.8228 -1.7562 34 1 -0.5165 -8.8541 -0.4808 35 1 -1.2209 -8.7895 -2.1150 36 1 -1.9617 -7.9166 1.7708 37 1 -3.6011 -7.2437 1.5944 38 1 -1.9616 -5.4152 1.6242 39 1 -2.6933 -5.5368 0.0073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:31 Heat of formation + Delta-G solvation = -147.908086 kcal Electronic energy + Delta-G solvation = -25492.146052 eV Core-core repulsion = 21684.413046 eV Total energy + Delta-G solvation = -3807.733006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37931 -39.22550 -38.12949 -37.86751 -37.12153 -36.35029 -34.68651 -32.98743 -32.12248 -30.70330 -28.82624 -27.85125 -24.89741 -24.38501 -23.48527 -21.77285 -21.45761 -19.87548 -19.06191 -18.48486 -18.01938 -17.37651 -17.35308 -16.85049 -16.68989 -16.19530 -16.05836 -15.49512 -15.18804 -14.96326 -14.82883 -14.53555 -14.36708 -14.15300 -13.89320 -13.55289 -13.36431 -13.26054 -13.23847 -13.10995 -12.98573 -12.81159 -12.67876 -12.62470 -12.35037 -12.06218 -11.92130 -11.87606 -11.68227 -11.59088 -11.03031 -10.97442 -9.70121 -9.44455 -8.96572 -8.26169 -6.99354 -0.98233 0.29064 0.62624 1.37264 1.37721 1.55549 1.68293 2.17022 2.22190 2.31245 2.67667 2.93143 3.05137 3.41221 3.43351 3.61200 3.79508 3.83128 3.90808 3.95579 4.04327 4.11263 4.21443 4.35665 4.45359 4.58158 4.59312 4.64322 4.77291 4.79615 4.89687 5.04305 5.05912 5.19656 5.25282 5.43433 5.57695 5.74560 5.98321 6.09182 6.65752 6.76659 6.92112 8.35467 8.57662 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.003619 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.315019 B = 7735.031511 C = 8990.033903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.024 3.976 3 Si 0.992 3.008 4 H -0.243 1.243 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.572 6.572 11 C -0.194 4.194 12 C -0.065 4.065 13 C -0.169 4.169 14 C -0.071 4.071 15 C -0.224 4.224 16 C 0.131 3.869 17 O -0.299 6.299 18 C 0.052 3.948 19 C -0.141 4.141 20 C -0.579 4.579 21 S 2.424 3.576 22 O -0.971 6.971 23 O -0.981 6.981 24 C -0.582 4.582 25 C -0.111 4.111 26 H 0.278 0.722 27 H 0.129 0.871 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -16.958 1.556 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.194 4.194 3 Si 0.811 3.189 4 H -0.166 1.166 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.108 0.892 9 C 0.264 3.736 10 O -0.464 6.464 11 C -0.196 4.196 12 C -0.083 4.083 13 C -0.187 4.187 14 C -0.089 4.089 15 C -0.242 4.242 16 C 0.085 3.915 17 O -0.212 6.212 18 C -0.005 4.005 19 C -0.179 4.179 20 C -0.710 4.710 21 S 2.610 3.390 22 O -0.968 6.968 23 O -0.978 6.978 24 C -0.712 4.712 25 C -0.150 4.150 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.171 0.829 29 H 0.183 0.817 30 H 0.178 0.822 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.193 0.807 35 H 0.179 0.821 36 H 0.189 0.811 37 H 0.174 0.826 38 H 0.106 0.894 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.046 -17.201 1.216 17.511 hybrid contribution 0.584 1.474 0.183 1.596 sum 3.630 -15.727 1.400 16.201 Atomic orbital electron populations 1.70137 1.09861 1.29388 1.32778 1.27205 0.95453 1.05401 0.91352 0.85061 0.79745 0.75372 0.78763 1.16608 1.19183 1.19081 1.21458 0.95907 0.92459 1.48494 0.89151 1.18738 0.88486 0.88106 0.78302 1.90482 1.16600 1.89545 1.49743 1.21224 0.95481 0.94781 1.08084 1.21465 0.91625 0.99782 0.95428 1.21369 1.01225 0.91569 1.04518 1.21460 0.92894 0.99176 0.95354 1.21523 0.96198 0.96185 1.10300 1.19620 0.82661 0.94168 0.95056 1.86496 1.16710 1.31090 1.86853 1.22877 0.94848 0.85284 0.97471 1.21839 1.05670 0.92724 0.97678 1.30046 1.21809 1.02868 1.16296 1.07681 0.78581 0.74702 0.78085 1.93558 1.83998 1.35315 1.83912 1.93552 1.63158 1.75482 1.65618 1.30088 1.12756 1.07580 1.20801 1.21182 0.94229 0.96260 1.03317 0.91123 0.85308 0.82914 0.81687 0.82157 0.87108 0.90486 0.88231 0.80734 0.82141 0.81090 0.82590 0.89406 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.98 11.73 21.88 0.26 -47.72 16 2 C 0.02 1.32 5.50 85.39 0.47 1.79 16 3 Si 0.99 40.07 29.56 68.60 2.03 42.09 16 4 H -0.24 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.55 -31.40 8.86 23.67 0.21 -31.19 16 8 H 0.09 4.58 6.02 -2.91 -0.02 4.56 16 9 C 0.37 21.85 6.91 25.61 0.18 22.03 16 10 O -0.57 -38.60 13.71 16.18 0.22 -38.38 16 11 C -0.19 -9.24 5.90 -19.91 -0.12 -9.35 16 12 C -0.06 -2.47 9.43 22.53 0.21 -2.26 16 13 C -0.17 -4.69 10.02 22.25 0.22 -4.47 16 14 C -0.07 -1.69 10.04 22.34 0.22 -1.47 16 15 C -0.22 -6.22 8.16 22.34 0.18 -6.04 16 16 C 0.13 5.31 6.55 22.90 0.15 5.46 16 17 O -0.30 -12.58 7.86 -68.61 -0.54 -13.12 16 18 C 0.05 1.37 1.90 30.32 0.06 1.43 16 19 C -0.14 -3.09 4.86 30.47 0.15 -2.94 16 20 C -0.58 -7.41 6.35 72.00 0.46 -6.95 16 21 S 2.42 44.33 5.30 -56.49 -0.30 44.03 16 22 O -0.97 -22.29 18.10 -127.38 -2.31 -24.60 16 23 O -0.98 -27.69 17.95 -127.38 -2.29 -29.98 16 24 C -0.58 -8.90 6.35 71.99 0.46 -8.44 16 25 C -0.11 -2.82 5.37 30.47 0.16 -2.66 16 26 H 0.28 15.12 8.29 -92.71 -0.77 14.35 16 27 H 0.13 4.85 6.20 -2.91 -0.02 4.84 16 28 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 30 H 0.16 3.01 5.53 -2.91 -0.02 3.00 16 31 H 0.11 2.08 6.25 -2.39 -0.01 2.06 16 32 H 0.08 2.01 8.02 -2.39 -0.02 1.99 16 33 H 0.10 2.16 6.96 -2.39 -0.02 2.14 16 34 H 0.17 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.17 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.08 2.22 8.01 -2.39 -0.02 2.20 16 Total: -1.00 -92.97 333.84 1.18 -91.79 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.09 Total: 20.94 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 3.01 Total: -45.05 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.26 Total: -47.72 kcal Atomic # 8 Polarization: -101.17 SS G_CDS: -4.91 Total: -106.08 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 44.33 SS G_CDS: -0.30 Total: 44.03 kcal Total: -92.97 1.18 -91.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.114 kcal (2) G-P(sol) polarization free energy of solvation -92.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds